data_7LPB
#
_model_server_result.job_id            J5C1aPiGifYKWogTFvnIzQ 
_model_server_result.datetime_utc      '2024-11-04 22:37:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lpb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1300}' 
#
_entry.id    7LPB 
#
_exptl.entry_id    7LPB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              717.996 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LPB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 M N N 
? 3 N N N 
? 3 Q N N 
? 3 T N N 
? 3 U N N 
? 3 X N N 
? 3 AA N N 
? 3 BA N N 
? 3 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 386 A CYS 386 1_555 A SG CYS 390 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 B SG CYS 386 B CYS 386 1_555 B SG CYS 390 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 C SG CYS 386 C CYS 386 1_555 C SG CYS 390 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf4 D SG CYS 386 D CYS 386 1_555 D SG CYS 390 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C39 H76 N O8 P' 
_chem_comp.formula_weight    717.996 
_chem_comp.id                6OU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7LPB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 LBN A 1 1000 1000 LBN LBN . 
F 3 6OU A 1 1300 1300 6OU 6OU . 
G 3 6OU A 1 1400 1400 6OU 6OU . 
H 2 LBN A 1 1500 1500 LBN LBN . 
I 4 YFP A 1 1600 1600 YFP YFP . 
J 3 6OU A 1 1900 1900 6OU 6OU . 
K 5 4DY A 1 3000 3000 4DY 4DY . 
L 2 LBN B 1 1000 1000 LBN LBN . 
M 3 6OU B 1 1300 1300 6OU 6OU . 
N 3 6OU B 1 1400 1400 6OU 6OU . 
O 2 LBN B 1 1500 1500 LBN LBN . 
P 4 YFP B 1 1600 1600 YFP YFP . 
Q 3 6OU B 1 1900 1900 6OU 6OU . 
R 5 4DY B 1 3000 3000 4DY 4DY . 
S 2 LBN C 1 1000 1000 LBN LBN . 
T 3 6OU C 1 1300 1300 6OU 6OU . 
U 3 6OU C 1 1400 1400 6OU 6OU . 
V 2 LBN C 1 1500 1500 LBN LBN . 
W 4 YFP C 1 1600 1600 YFP YFP . 
X 3 6OU C 1 1900 1900 6OU 6OU . 
Y 5 4DY C 1 3000 3000 4DY 4DY . 
Z 2 LBN D 1 1000 1000 LBN LBN . 
AA 3 6OU D 1 1300 1300 6OU 6OU . 
BA 3 6OU D 1 1400 1400 6OU 6OU . 
CA 2 LBN D 1 1500 1500 LBN LBN . 
DA 4 YFP D 1 1600 1600 YFP YFP . 
EA 3 6OU D 1 1900 1900 6OU 6OU . 
FA 5 4DY D 1 3000 3000 4DY 4DY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C06 6OU . . . M 3 124.494 127.653 118.883 1 35.91 ? C06 6OU 1300 B 1 
HETATM 2 C C07 6OU . . . M 3 123.576 127.575 117.619 1 35.91 ? C07 6OU 1300 B 1 
HETATM 3 C C08 6OU . . . M 3 122.219 126.832 117.776 1 35.91 ? C08 6OU 1300 B 1 
HETATM 4 C C09 6OU . . . M 3 121.12 127.163 116.71 1 35.91 ? C09 6OU 1300 B 1 
HETATM 5 C C10 6OU . . . M 3 120.159 126.004 116.334 1 35.91 ? C10 6OU 1300 B 1 
HETATM 6 C C11 6OU . . . M 3 118.658 126.368 116.107 1 35.91 ? C11 6OU 1300 B 1 
HETATM 7 C C12 6OU . . . M 3 118.102 126.146 114.668 1 35.91 ? C12 6OU 1300 B 1 
HETATM 8 C C13 6OU . . . M 3 116.989 125.078 114.496 1 35.91 ? C13 6OU 1300 B 1 
HETATM 9 C C14 6OU . . . M 3 116.338 125.009 113.073 1 35.91 ? C14 6OU 1300 B 1 
HETATM 10 C C15 6OU . . . M 3 116.49 123.649 112.33 1 35.91 ? C15 6OU 1300 B 1 
HETATM 11 C C16 6OU . . . M 3 115.989 123.682 110.868 1 35.91 ? C16 6OU 1300 B 1 
HETATM 12 O O17 6OU . . . M 3 114.954 124.175 110.538 1 35.91 ? O17 6OU 1300 B 1 
HETATM 13 O O18 6OU . . . M 3 116.828 123.095 109.938 1 35.91 ? O18 6OU 1300 B 1 
HETATM 14 C C19 6OU . . . M 3 118.101 123.734 109.74 1 35.91 ? C19 6OU 1300 B 1 
HETATM 15 C C20 6OU . . . M 3 119.029 122.958 108.745 1 35.91 ? C20 6OU 1300 B 1 
HETATM 16 C C21 6OU . . . M 3 118.243 122.368 107.513 1 35.91 ? C21 6OU 1300 B 1 
HETATM 17 O O22 6OU . . . M 3 118.016 123.347 106.564 1 35.91 ? O22 6OU 1300 B 1 
HETATM 18 P P23 6OU . . . M 3 119.321 124.455 106.129 1 35.91 ? P23 6OU 1300 B 1 
HETATM 19 O O24 6OU . . . M 3 120.494 123.613 105.796 1 35.91 ? O24 6OU 1300 B 1 
HETATM 20 O O25 6OU . . . M 3 119.324 125.513 107.18 1 35.91 -1 O25 6OU 1300 B 1 
HETATM 21 O O26 6OU . . . M 3 118.815 125.219 104.664 1 35.91 ? O26 6OU 1300 B 1 
HETATM 22 O O30 6OU . . . M 3 119.704 121.896 109.468 1 35.91 ? O30 6OU 1300 B 1 
HETATM 23 C C31 6OU . . . M 3 119.149 120.621 109.461 1 35.91 ? C31 6OU 1300 B 1 
HETATM 24 O O32 6OU . . . M 3 119.471 119.812 108.653 1 35.91 ? O32 6OU 1300 B 1 
HETATM 25 C C33 6OU . . . M 3 118.098 120.313 110.564 1 35.91 ? C33 6OU 1300 B 1 
HETATM 26 C C34 6OU . . . M 3 118.754 119.915 111.93 1 35.91 ? C34 6OU 1300 B 1 
HETATM 27 C C35 6OU . . . M 3 120.194 120.472 112.197 1 35.91 ? C35 6OU 1300 B 1 
HETATM 28 C C36 6OU . . . M 3 120.577 120.689 113.701 1 35.91 ? C36 6OU 1300 B 1 
HETATM 29 C C37 6OU . . . M 3 122.075 120.976 114.012 1 35.91 ? C37 6OU 1300 B 1 
HETATM 30 C C38 6OU . . . M 3 122.361 121.927 115.209 1 35.91 ? C38 6OU 1300 B 1 
HETATM 31 C C39 6OU . . . M 3 122.383 121.251 116.589 1 35.91 ? C39 6OU 1300 B 1 
HETATM 32 C C40 6OU . . . M 3 122.771 122.14 117.741 1 35.91 ? C40 6OU 1300 B 1 
HETATM 33 C C41 6OU . . . M 3 122.017 122.383 118.824 1 35.91 ? C41 6OU 1300 B 1 
HETATM 34 C C42 6OU . . . M 3 122.422 123.277 119.968 1 35.91 ? C42 6OU 1300 B 1 
HETATM 35 C C43 6OU . . . M 3 121.505 123.301 121.227 1 35.91 ? C43 6OU 1300 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#