data_7LPB # _model_server_result.job_id LxjXV20GMK3mlRDfRksWTw _model_server_result.datetime_utc '2024-11-04 22:32:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1600}' # _entry.id 7LPB # _exptl.entry_id 7LPB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.007 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LPB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 P N N ? 4 W N N ? 4 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 386 A CYS 386 1_555 A SG CYS 390 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 B SG CYS 386 B CYS 386 1_555 B SG CYS 390 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 C SG CYS 386 C CYS 386 1_555 C SG CYS 390 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 D SG CYS 386 D CYS 386 1_555 D SG CYS 390 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id YFP _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoglycerol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7LPB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LBN A 1 1000 1000 LBN LBN . F 3 6OU A 1 1300 1300 6OU 6OU . G 3 6OU A 1 1400 1400 6OU 6OU . H 2 LBN A 1 1500 1500 LBN LBN . I 4 YFP A 1 1600 1600 YFP YFP . J 3 6OU A 1 1900 1900 6OU 6OU . K 5 4DY A 1 3000 3000 4DY 4DY . L 2 LBN B 1 1000 1000 LBN LBN . M 3 6OU B 1 1300 1300 6OU 6OU . N 3 6OU B 1 1400 1400 6OU 6OU . O 2 LBN B 1 1500 1500 LBN LBN . P 4 YFP B 1 1600 1600 YFP YFP . Q 3 6OU B 1 1900 1900 6OU 6OU . R 5 4DY B 1 3000 3000 4DY 4DY . S 2 LBN C 1 1000 1000 LBN LBN . T 3 6OU C 1 1300 1300 6OU 6OU . U 3 6OU C 1 1400 1400 6OU 6OU . V 2 LBN C 1 1500 1500 LBN LBN . W 4 YFP C 1 1600 1600 YFP YFP . X 3 6OU C 1 1900 1900 6OU 6OU . Y 5 4DY C 1 3000 3000 4DY 4DY . Z 2 LBN D 1 1000 1000 LBN LBN . AA 3 6OU D 1 1300 1300 6OU 6OU . BA 3 6OU D 1 1400 1400 6OU 6OU . CA 2 LBN D 1 1500 1500 LBN LBN . DA 4 YFP D 1 1600 1600 YFP YFP . EA 3 6OU D 1 1900 1900 6OU 6OU . FA 5 4DY D 1 3000 3000 4DY 4DY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 YFP . . . I 4 156.954 108.325 125.64 1 54.58 ? C01 YFP 1600 A 1 HETATM 2 C C02 YFP . . . I 4 156.31 109.073 126.835 1 54.58 ? C02 YFP 1600 A 1 HETATM 3 C C03 YFP . . . I 4 154.746 109.018 126.883 1 54.58 ? C03 YFP 1600 A 1 HETATM 4 C C04 YFP . . . I 4 154.129 107.886 127.786 1 54.58 ? C04 YFP 1600 A 1 HETATM 5 C C05 YFP . . . I 4 152.634 108.11 128.238 1 54.58 ? C05 YFP 1600 A 1 HETATM 6 C C06 YFP . . . I 4 151.885 106.84 128.784 1 54.58 ? C06 YFP 1600 A 1 HETATM 7 C C07 YFP . . . I 4 151.007 107.068 130.073 1 54.58 ? C07 YFP 1600 A 1 HETATM 8 C C08 YFP . . . I 4 151.8 107.281 131.416 1 54.58 ? C08 YFP 1600 A 1 HETATM 9 C C09 YFP . . . I 4 151.619 106.155 132.499 1 54.58 ? C09 YFP 1600 A 1 HETATM 10 C C10 YFP . . . I 4 152.35 106.404 133.865 1 54.58 ? C10 YFP 1600 A 1 HETATM 11 C C11 YFP . . . I 4 152.009 107.764 134.574 1 54.58 ? C11 YFP 1600 A 1 HETATM 12 C C12 YFP . . . I 4 153.237 108.651 134.969 1 54.58 ? C12 YFP 1600 A 1 HETATM 13 C C13 YFP . . . I 4 153.931 108.28 136.331 1 54.58 ? C13 YFP 1600 A 1 HETATM 14 C C14 YFP . . . I 4 154.42 109.498 137.203 1 54.58 ? C14 YFP 1600 A 1 HETATM 15 C C15 YFP . . . I 4 154.525 109.224 138.759 1 54.58 ? C15 YFP 1600 A 1 HETATM 16 C C16 YFP . . . I 4 154.633 110.493 139.639 1 54.58 ? C16 YFP 1600 A 1 HETATM 17 C C19 YFP . . . I 4 153.471 112.539 138.937 1 54.58 ? C19 YFP 1600 A 1 HETATM 18 C C20 YFP . . . I 4 153.196 113.91 139.748 1 54.58 ? C20 YFP 1600 A 1 HETATM 19 C C21 YFP . . . I 4 152.98 113.648 141.287 1 54.58 ? C21 YFP 1600 A 1 HETATM 20 C C33 YFP . . . I 4 152.145 115.771 138.509 1 54.58 ? C33 YFP 1600 A 1 HETATM 21 C C35 YFP . . . I 4 152.115 115.936 136.964 1 54.58 ? C35 YFP 1600 A 1 HETATM 22 C C36 YFP . . . I 4 151.063 115.037 136.205 1 54.58 ? C36 YFP 1600 A 1 HETATM 23 C C37 YFP . . . I 4 151.654 113.889 135.292 1 54.58 ? C37 YFP 1600 A 1 HETATM 24 C C38 YFP . . . I 4 150.749 113.44 134.087 1 54.58 ? C38 YFP 1600 A 1 HETATM 25 C C39 YFP . . . I 4 151.192 112.135 133.324 1 54.58 ? C39 YFP 1600 A 1 HETATM 26 C C40 YFP . . . I 4 150.258 111.679 132.129 1 54.58 ? C40 YFP 1600 A 1 HETATM 27 O O17 YFP . . . I 4 155.675 110.768 140.237 1 54.58 ? O17 YFP 1600 A 1 HETATM 28 O O18 YFP . . . I 4 153.571 111.378 139.799 1 54.58 ? O18 YFP 1600 A 1 HETATM 29 O O22 YFP . . . I 4 151.879 114.38 141.771 1 54.58 ? O22 YFP 1600 A 1 HETATM 30 O O24 YFP . . . I 4 152.42 113.622 144.177 1 54.58 ? O24 YFP 1600 A 1 HETATM 31 O O25 YFP . . . I 4 149.985 113.578 143.445 1 54.58 -1 O25 YFP 1600 A 1 HETATM 32 O O26 YFP . . . I 4 151.125 115.882 143.9 1 54.58 ? O26 YFP 1600 A 1 HETATM 33 O O32 YFP . . . I 4 152.03 114.54 139.142 1 54.58 ? O32 YFP 1600 A 1 HETATM 34 O O34 YFP . . . I 4 152.274 116.763 139.231 1 54.58 ? O34 YFP 1600 A 1 HETATM 35 P P23 YFP . . . I 4 151.328 114.277 143.365 1 54.58 ? P23 YFP 1600 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #