data_7LPB
#
_model_server_result.job_id            dymzuXy0NDDVmizmCGr89Q 
_model_server_result.datetime_utc      '2024-11-04 22:33:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lpb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":3000}' 
#
_entry.id    7LPB 
#
_exptl.entry_id    7LPB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              305.412 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LPB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 K N N 
? 5 R N N 
? 5 Y N N 
? 5 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 386 A CYS 386 1_555 A SG CYS 390 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 B SG CYS 386 B CYS 386 1_555 B SG CYS 390 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 C SG CYS 386 C CYS 386 1_555 C SG CYS 390 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf4 D SG CYS 386 D CYS 386 1_555 D SG CYS 390 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
#
_chem_comp.formula           'C18 H27 N O3' 
_chem_comp.formula_weight    305.412 
_chem_comp.id                4DY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Capsaicin;8-Methyl-N-vanillyl-trans-6-nonenamide;NGX-4010 
#
_atom_sites.entry_id                     7LPB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 LBN A 1 1000 1000 LBN LBN . 
F 3 6OU A 1 1300 1300 6OU 6OU . 
G 3 6OU A 1 1400 1400 6OU 6OU . 
H 2 LBN A 1 1500 1500 LBN LBN . 
I 4 YFP A 1 1600 1600 YFP YFP . 
J 3 6OU A 1 1900 1900 6OU 6OU . 
K 5 4DY A 1 3000 3000 4DY 4DY . 
L 2 LBN B 1 1000 1000 LBN LBN . 
M 3 6OU B 1 1300 1300 6OU 6OU . 
N 3 6OU B 1 1400 1400 6OU 6OU . 
O 2 LBN B 1 1500 1500 LBN LBN . 
P 4 YFP B 1 1600 1600 YFP YFP . 
Q 3 6OU B 1 1900 1900 6OU 6OU . 
R 5 4DY B 1 3000 3000 4DY 4DY . 
S 2 LBN C 1 1000 1000 LBN LBN . 
T 3 6OU C 1 1300 1300 6OU 6OU . 
U 3 6OU C 1 1400 1400 6OU 6OU . 
V 2 LBN C 1 1500 1500 LBN LBN . 
W 4 YFP C 1 1600 1600 YFP YFP . 
X 3 6OU C 1 1900 1900 6OU 6OU . 
Y 5 4DY C 1 3000 3000 4DY 4DY . 
Z 2 LBN D 1 1000 1000 LBN LBN . 
AA 3 6OU D 1 1300 1300 6OU 6OU . 
BA 3 6OU D 1 1400 1400 6OU 6OU . 
CA 2 LBN D 1 1500 1500 LBN LBN . 
DA 4 YFP D 1 1600 1600 YFP YFP . 
EA 3 6OU D 1 1900 1900 6OU 6OU . 
FA 5 4DY D 1 3000 3000 4DY 4DY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 4DY . . . FA 5 140.724 161.543 132.4 1 34.11 ? C1 4DY 3000 D 1 
HETATM 2 C C2 4DY . . . FA 5 140.903 162.896 132.351 1 34.11 ? C2 4DY 3000 D 1 
HETATM 3 C C3 4DY . . . FA 5 140.99 163.622 133.513 1 34.11 ? C3 4DY 3000 D 1 
HETATM 4 C C4 4DY . . . FA 5 140.875 162.973 134.725 1 34.11 ? C4 4DY 3000 D 1 
HETATM 5 C C5 4DY . . . FA 5 140.684 161.614 134.774 1 34.11 ? C5 4DY 3000 D 1 
HETATM 6 C C40 4DY . . . FA 5 147.163 161.88 121.395 1 34.11 ? C40 4DY 3000 D 1 
HETATM 7 C C38 4DY . . . FA 5 145.767 161.659 121.96 1 34.11 ? C38 4DY 3000 D 1 
HETATM 8 C C44 4DY . . . FA 5 144.894 160.979 120.916 1 34.11 ? C44 4DY 3000 D 1 
HETATM 9 C C37 4DY . . . FA 5 145.808 160.754 123.182 1 34.11 ? C37 4DY 3000 D 1 
HETATM 10 C C36 4DY . . . FA 5 145.087 161.029 124.243 1 34.11 ? C36 4DY 3000 D 1 
HETATM 11 C C33 4DY . . . FA 5 145.135 160.105 125.449 1 34.11 ? C33 4DY 3000 D 1 
HETATM 12 C C30 4DY . . . FA 5 145.02 160.915 126.728 1 34.11 ? C30 4DY 3000 D 1 
HETATM 13 C C27 4DY . . . FA 5 143.853 160.386 127.537 1 34.11 ? C27 4DY 3000 D 1 
HETATM 14 C C24 4DY . . . FA 5 143.743 161.222 128.788 1 34.11 ? C24 4DY 3000 D 1 
HETATM 15 C C22 4DY . . . FA 5 142.751 160.594 129.746 1 34.11 ? C22 4DY 3000 D 1 
HETATM 16 O O23 4DY . . . FA 5 142.929 159.501 130.126 1 34.11 ? O23 4DY 3000 D 1 
HETATM 17 N N21 4DY . . . FA 5 141.608 161.345 130.199 1 34.11 ? N21 4DY 3000 D 1 
HETATM 18 C C17 4DY . . . FA 5 140.645 160.772 131.106 1 34.11 ? C17 4DY 3000 D 1 
HETATM 19 C C6 4DY . . . FA 5 140.61 160.896 133.604 1 34.11 ? C6 4DY 3000 D 1 
HETATM 20 O O10 4DY . . . FA 5 140.952 163.685 135.92 1 34.11 ? O10 4DY 3000 D 1 
HETATM 21 O O12 4DY . . . FA 5 141.182 165.005 133.478 1 34.11 ? O12 4DY 3000 D 1 
HETATM 22 C C13 4DY . . . FA 5 141.49 165.546 132.234 1 34.11 ? C13 4DY 3000 D 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    69 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
#