data_7LPD
#
_model_server_result.job_id            0iTEorCUsNKr-smC6Nqpgw 
_model_server_result.datetime_utc      '2024-11-04 22:53:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lpd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":902}' 
#
_entry.id    7LPD 
#
_exptl.entry_id    7LPD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              717.996 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 N N N 
? 3 P N N 
? 3 S N N 
? 3 T N N 
? 3 V N N 
? 3 Y N N 
? 3 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 386 A CYS 386 1_555 A SG CYS 390 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 B SG CYS 386 B CYS 386 1_555 B SG CYS 390 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 C SG CYS 386 C CYS 386 1_555 C SG CYS 390 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 D SG CYS 386 D CYS 386 1_555 D SG CYS 390 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C39 H76 N O8 P' 
_chem_comp.formula_weight    717.996 
_chem_comp.id                6OU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7LPD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 LBN A 1 901 901 LBN LBN . 
F 3 6OU A 1 902 902 6OU 6OU . 
G 3 6OU A 1 903 903 6OU 6OU . 
H 4 4DY A 1 904 904 4DY 4DY . 
I 3 6OU A 1 905 905 6OU 6OU . 
J 2 LBN A 1 906 906 LBN LBN . 
K 3 6OU A 1 907 903 6OU 6OU . 
L 2 LBN B 1 901 901 LBN LBN . 
M 3 6OU B 1 902 902 6OU 6OU . 
N 3 6OU B 1 903 903 6OU 6OU . 
O 4 4DY B 1 904 904 4DY 4DY . 
P 3 6OU B 1 905 905 6OU 6OU . 
Q 2 LBN B 1 906 906 LBN LBN . 
R 2 LBN C 1 901 901 LBN LBN . 
S 3 6OU C 1 902 902 6OU 6OU . 
T 3 6OU C 1 903 903 6OU 6OU . 
U 4 4DY C 1 904 904 4DY 4DY . 
V 3 6OU C 1 905 905 6OU 6OU . 
W 2 LBN C 1 906 906 LBN LBN . 
X 2 LBN D 1 901 901 LBN LBN . 
Y 3 6OU D 1 902 902 6OU 6OU . 
Z 4 4DY D 1 903 904 4DY 4DY . 
AA 3 6OU D 1 904 905 6OU 6OU . 
BA 2 LBN D 1 905 906 LBN LBN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 6OU . . . F 3 133.209 156.728 155.548 1 33.51 ? C10 6OU 902 A 1 
HETATM 2 C C11 6OU . . . F 3 132.356 157.539 156.576 1 33.51 ? C11 6OU 902 A 1 
HETATM 3 C C12 6OU . . . F 3 132.352 157.004 158.043 1 33.51 ? C12 6OU 902 A 1 
HETATM 4 C C13 6OU . . . F 3 132.309 158.061 159.183 1 33.51 ? C13 6OU 902 A 1 
HETATM 5 C C14 6OU . . . F 3 132.406 157.494 160.643 1 33.51 ? C14 6OU 902 A 1 
HETATM 6 C C15 6OU . . . F 3 132.582 158.566 161.766 1 33.51 ? C15 6OU 902 A 1 
HETATM 7 C C16 6OU . . . F 3 132.59 157.969 163.203 1 33.51 ? C16 6OU 902 A 1 
HETATM 8 O O17 6OU . . . F 3 133.016 156.881 163.445 1 33.51 ? O17 6OU 902 A 1 
HETATM 9 O O18 6OU . . . F 3 132.084 158.77 164.232 1 33.51 ? O18 6OU 902 A 1 
HETATM 10 C C19 6OU . . . F 3 131.197 159.872 163.899 1 33.51 ? C19 6OU 902 A 1 
HETATM 11 C C20 6OU . . . F 3 129.85 159.852 164.7 1 33.51 ? C20 6OU 902 A 1 
HETATM 12 C C21 6OU . . . F 3 130.042 159.44 166.216 1 33.51 ? C21 6OU 902 A 1 
HETATM 13 O O22 6OU . . . F 3 130.421 158.115 166.333 1 33.51 ? O22 6OU 902 A 1 
HETATM 14 P P23 6OU . . . F 3 130.804 157.465 167.933 1 33.51 ? P23 6OU 902 A 1 
HETATM 15 O O24 6OU . . . F 3 131.583 158.515 168.635 1 33.51 ? O24 6OU 902 A 1 
HETATM 16 O O25 6OU . . . F 3 131.291 156.073 167.707 1 33.51 -1 O25 6OU 902 A 1 
HETATM 17 O O26 6OU . . . F 3 129.288 157.33 168.754 1 33.51 ? O26 6OU 902 A 1 
HETATM 18 O O30 6OU . . . F 3 128.94 158.935 164.037 1 33.51 ? O30 6OU 902 A 1 
HETATM 19 C C31 6OU . . . F 3 127.684 159.409 163.666 1 33.51 ? C31 6OU 902 A 1 
HETATM 20 O O32 6OU . . . F 3 126.901 159.771 164.482 1 33.51 ? O32 6OU 902 A 1 
HETATM 21 C C33 6OU . . . F 3 127.359 159.443 162.14 1 33.51 ? C33 6OU 902 A 1 
HETATM 22 C C34 6OU . . . F 3 128.368 160.301 161.295 1 33.51 ? C34 6OU 902 A 1 
HETATM 23 C C35 6OU . . . F 3 128.437 159.993 159.756 1 33.51 ? C35 6OU 902 A 1 
HETATM 24 C C36 6OU . . . F 3 128.928 161.169 158.839 1 33.51 ? C36 6OU 902 A 1 
HETATM 25 C C37 6OU . . . F 3 127.89 161.779 157.847 1 33.51 ? C37 6OU 902 A 1 
HETATM 26 C C38 6OU . . . F 3 128.024 161.363 156.348 1 33.51 ? C38 6OU 902 A 1 
HETATM 27 C C39 6OU . . . F 3 128.783 160.049 156.087 1 33.51 ? C39 6OU 902 A 1 
HETATM 28 C C40 6OU . . . F 3 128.817 159.596 154.648 1 33.51 ? C40 6OU 902 A 1 
HETATM 29 C C41 6OU . . . F 3 129.204 158.383 154.219 1 33.51 ? C41 6OU 902 A 1 
HETATM 30 C C42 6OU . . . F 3 129.229 157.952 152.774 1 33.51 ? C42 6OU 902 A 1 
HETATM 31 C C43 6OU . . . F 3 130.393 157.024 152.317 1 33.51 ? C43 6OU 902 A 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#