data_7LPD # _model_server_result.job_id xtXwmlT5qCZA7VpIn6WN2g _model_server_result.datetime_utc '2024-11-04 22:56:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":903}' # _entry.id 7LPD # _exptl.entry_id 7LPD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 K N N ? 3 M N N ? 3 N N N ? 3 P N N ? 3 S N N ? 3 T N N ? 3 V N N ? 3 Y N N ? 3 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 386 A CYS 386 1_555 A SG CYS 390 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 386 B CYS 386 1_555 B SG CYS 390 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 C SG CYS 386 C CYS 386 1_555 C SG CYS 390 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 D SG CYS 386 D CYS 386 1_555 D SG CYS 390 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7LPD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LBN A 1 901 901 LBN LBN . F 3 6OU A 1 902 902 6OU 6OU . G 3 6OU A 1 903 903 6OU 6OU . H 4 4DY A 1 904 904 4DY 4DY . I 3 6OU A 1 905 905 6OU 6OU . J 2 LBN A 1 906 906 LBN LBN . K 3 6OU A 1 907 903 6OU 6OU . L 2 LBN B 1 901 901 LBN LBN . M 3 6OU B 1 902 902 6OU 6OU . N 3 6OU B 1 903 903 6OU 6OU . O 4 4DY B 1 904 904 4DY 4DY . P 3 6OU B 1 905 905 6OU 6OU . Q 2 LBN B 1 906 906 LBN LBN . R 2 LBN C 1 901 901 LBN LBN . S 3 6OU C 1 902 902 6OU 6OU . T 3 6OU C 1 903 903 6OU 6OU . U 4 4DY C 1 904 904 4DY 4DY . V 3 6OU C 1 905 905 6OU 6OU . W 2 LBN C 1 906 906 LBN LBN . X 2 LBN D 1 901 901 LBN LBN . Y 3 6OU D 1 902 902 6OU 6OU . Z 4 4DY D 1 903 904 4DY 4DY . AA 3 6OU D 1 904 905 6OU 6OU . BA 2 LBN D 1 905 906 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6OU . . . N 3 112.221 123.84 153.268 1 34.44 ? C10 6OU 903 B 1 HETATM 2 C C11 6OU . . . N 3 112.081 124.461 154.696 1 34.44 ? C11 6OU 903 B 1 HETATM 3 C C12 6OU . . . N 3 110.996 123.824 155.62 1 34.44 ? C12 6OU 903 B 1 HETATM 4 C C13 6OU . . . N 3 111.415 123.476 157.077 1 34.44 ? C13 6OU 903 B 1 HETATM 5 C C14 6OU . . . N 3 110.529 122.398 157.793 1 34.44 ? C14 6OU 903 B 1 HETATM 6 C C15 6OU . . . N 3 110.026 122.777 159.219 1 34.44 ? C15 6OU 903 B 1 HETATM 7 C C16 6OU . . . N 3 111.149 122.83 160.283 1 34.44 ? C16 6OU 903 B 1 HETATM 8 O O17 6OU . . . N 3 111.924 123.733 160.377 1 34.44 ? O17 6OU 903 B 1 HETATM 9 O O18 6OU . . . N 3 111.211 121.747 161.141 1 34.44 ? O18 6OU 903 B 1 HETATM 10 C C19 6OU . . . N 3 109.952 121.234 161.616 1 34.44 ? C19 6OU 903 B 1 HETATM 11 C C20 6OU . . . N 3 110.099 119.877 162.384 1 34.44 ? C20 6OU 903 B 1 HETATM 12 C C21 6OU . . . N 3 110.369 120.09 163.925 1 34.44 ? C21 6OU 903 B 1 HETATM 13 O O22 6OU . . . N 3 111.546 120.788 164.125 1 34.44 ? O22 6OU 903 B 1 HETATM 14 P P23 6OU . . . N 3 111.798 121.659 165.64 1 34.44 ? P23 6OU 903 B 1 HETATM 15 O O24 6OU . . . N 3 111.885 123.097 165.287 1 34.44 ? O24 6OU 903 B 1 HETATM 16 O O25 6OU . . . N 3 110.813 121.093 166.607 1 34.44 -1 O25 6OU 903 B 1 HETATM 17 O O26 6OU . . . N 3 113.364 121.181 166.195 1 34.44 ? O26 6OU 903 B 1 HETATM 18 O O30 6OU . . . N 3 111.201 119.142 161.788 1 34.44 ? O30 6OU 903 B 1 HETATM 19 C C31 6OU . . . N 3 111.142 117.752 161.773 1 34.44 ? C31 6OU 903 B 1 HETATM 20 O O32 6OU . . . N 3 111.225 117.122 162.777 1 34.44 ? O32 6OU 903 B 1 HETATM 21 C C33 6OU . . . N 3 110.965 117.071 160.384 1 34.44 ? C33 6OU 903 B 1 HETATM 22 C C34 6OU . . . N 3 111.622 117.874 159.205 1 34.44 ? C34 6OU 903 B 1 HETATM 23 C C35 6OU . . . N 3 111.11 117.551 157.757 1 34.44 ? C35 6OU 903 B 1 HETATM 24 C C36 6OU . . . N 3 111.404 118.642 156.67 1 34.44 ? C36 6OU 903 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #