data_7LPD # _model_server_result.job_id G5iqK3xLC2pYpVgILeOkLg _model_server_result.datetime_utc '2024-11-04 23:01:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":904}' # _entry.id 7LPD # _exptl.entry_id 7LPD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 305.412 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 O N N ? 4 U N N ? 4 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 386 A CYS 386 1_555 A SG CYS 390 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 386 B CYS 386 1_555 B SG CYS 390 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 C SG CYS 386 C CYS 386 1_555 C SG CYS 390 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 D SG CYS 386 D CYS 386 1_555 D SG CYS 390 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C18 H27 N O3' _chem_comp.formula_weight 305.412 _chem_comp.id 4DY _chem_comp.mon_nstd_flag . _chem_comp.name (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Capsaicin;8-Methyl-N-vanillyl-trans-6-nonenamide;NGX-4010 # _atom_sites.entry_id 7LPD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LBN A 1 901 901 LBN LBN . F 3 6OU A 1 902 902 6OU 6OU . G 3 6OU A 1 903 903 6OU 6OU . H 4 4DY A 1 904 904 4DY 4DY . I 3 6OU A 1 905 905 6OU 6OU . J 2 LBN A 1 906 906 LBN LBN . K 3 6OU A 1 907 903 6OU 6OU . L 2 LBN B 1 901 901 LBN LBN . M 3 6OU B 1 902 902 6OU 6OU . N 3 6OU B 1 903 903 6OU 6OU . O 4 4DY B 1 904 904 4DY 4DY . P 3 6OU B 1 905 905 6OU 6OU . Q 2 LBN B 1 906 906 LBN LBN . R 2 LBN C 1 901 901 LBN LBN . S 3 6OU C 1 902 902 6OU 6OU . T 3 6OU C 1 903 903 6OU 6OU . U 4 4DY C 1 904 904 4DY 4DY . V 3 6OU C 1 905 905 6OU 6OU . W 2 LBN C 1 906 906 LBN LBN . X 2 LBN D 1 901 901 LBN LBN . Y 3 6OU D 1 902 902 6OU 6OU . Z 4 4DY D 1 903 904 4DY 4DY . AA 3 6OU D 1 904 905 6OU 6OU . BA 2 LBN D 1 905 906 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4DY . . . H 4 146.903 155.536 142.331 1 27.47 ? C1 4DY 904 A 1 HETATM 2 C C2 4DY . . . H 4 147.543 156.752 142.447 1 27.47 ? C2 4DY 904 A 1 HETATM 3 C C3 4DY . . . H 4 147.89 157.461 141.31 1 27.47 ? C3 4DY 904 A 1 HETATM 4 C C4 4DY . . . H 4 147.589 156.932 140.071 1 27.47 ? C4 4DY 904 A 1 HETATM 5 C C5 4DY . . . H 4 146.95 155.719 139.957 1 27.47 ? C5 4DY 904 A 1 HETATM 6 C C40 4DY . . . H 4 141.792 158.916 152.817 1 27.47 ? C40 4DY 904 A 1 HETATM 7 C C38 4DY . . . H 4 143.136 158.227 152.618 1 27.47 ? C38 4DY 904 A 1 HETATM 8 C C44 4DY . . . H 4 143.506 157.462 153.881 1 27.47 ? C44 4DY 904 A 1 HETATM 9 C C37 4DY . . . H 4 143.026 157.251 151.456 1 27.47 ? C37 4DY 904 A 1 HETATM 10 C C36 4DY . . . H 4 143.395 157.628 150.254 1 27.47 ? C36 4DY 904 A 1 HETATM 11 C C33 4DY . . . H 4 143.282 156.655 149.087 1 27.47 ? C33 4DY 904 A 1 HETATM 12 C C30 4DY . . . H 4 142.805 157.427 147.864 1 27.47 ? C30 4DY 904 A 1 HETATM 13 C C27 4DY . . . H 4 143.093 156.622 146.603 1 27.47 ? C27 4DY 904 A 1 HETATM 14 C C24 4DY . . . H 4 144.529 156.869 146.167 1 27.47 ? C24 4DY 904 A 1 HETATM 15 C C22 4DY . . . H 4 144.838 155.948 144.998 1 27.47 ? C22 4DY 904 A 1 HETATM 16 O O23 4DY . . . H 4 143.95 155.499 144.364 1 27.47 ? O23 4DY 904 A 1 HETATM 17 N N21 4DY . . . H 4 146.214 155.633 144.672 1 27.47 ? N21 4DY 904 A 1 HETATM 18 C C17 4DY . . . H 4 146.518 154.743 143.568 1 27.47 ? C17 4DY 904 A 1 HETATM 19 C C6 4DY . . . H 4 146.608 155.018 141.09 1 27.47 ? C6 4DY 904 A 1 HETATM 20 O O10 4DY . . . H 4 147.931 157.631 138.911 1 27.47 ? O10 4DY 904 A 1 HETATM 21 O O12 4DY . . . H 4 148.538 158.702 141.345 1 27.47 ? O12 4DY 904 A 1 HETATM 22 C C13 4DY . . . H 4 148.8 159.289 142.588 1 27.47 ? C13 4DY 904 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #