data_7LPD
#
_model_server_result.job_id            YpPGHw3RUDpc6-KMejv3Jw 
_model_server_result.datetime_utc      '2024-11-04 22:56:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lpd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":905}' 
#
_entry.id    7LPD 
#
_exptl.entry_id    7LPD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              717.996 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 K N N 
? 3 M N N 
? 3 N N N 
? 3 P N N 
? 3 S N N 
? 3 T N N 
? 3 V N N 
? 3 Y N N 
? 3 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 386 A CYS 386 1_555 A SG CYS 390 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 B SG CYS 386 B CYS 386 1_555 B SG CYS 390 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 C SG CYS 386 C CYS 386 1_555 C SG CYS 390 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 D SG CYS 386 D CYS 386 1_555 D SG CYS 390 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C39 H76 N O8 P' 
_chem_comp.formula_weight    717.996 
_chem_comp.id                6OU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7LPD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 LBN A 1 901 901 LBN LBN . 
F 3 6OU A 1 902 902 6OU 6OU . 
G 3 6OU A 1 903 903 6OU 6OU . 
H 4 4DY A 1 904 904 4DY 4DY . 
I 3 6OU A 1 905 905 6OU 6OU . 
J 2 LBN A 1 906 906 LBN LBN . 
K 3 6OU A 1 907 903 6OU 6OU . 
L 2 LBN B 1 901 901 LBN LBN . 
M 3 6OU B 1 902 902 6OU 6OU . 
N 3 6OU B 1 903 903 6OU 6OU . 
O 4 4DY B 1 904 904 4DY 4DY . 
P 3 6OU B 1 905 905 6OU 6OU . 
Q 2 LBN B 1 906 906 LBN LBN . 
R 2 LBN C 1 901 901 LBN LBN . 
S 3 6OU C 1 902 902 6OU 6OU . 
T 3 6OU C 1 903 903 6OU 6OU . 
U 4 4DY C 1 904 904 4DY 4DY . 
V 3 6OU C 1 905 905 6OU 6OU . 
W 2 LBN C 1 906 906 LBN LBN . 
X 2 LBN D 1 901 901 LBN LBN . 
Y 3 6OU D 1 902 902 6OU 6OU . 
Z 4 4DY D 1 903 904 4DY 4DY . 
AA 3 6OU D 1 904 905 6OU 6OU . 
BA 2 LBN D 1 905 906 LBN LBN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C08 6OU . . . P 3 133.561 106.273 152.096 1 37.08 ? C08 6OU 905 B 1 
HETATM 2 C C09 6OU . . . P 3 132.812 106.91 153.325 1 37.08 ? C09 6OU 905 B 1 
HETATM 3 C C10 6OU . . . P 3 133.689 107.682 154.334 1 37.08 ? C10 6OU 905 B 1 
HETATM 4 C C11 6OU . . . P 3 133.104 107.902 155.742 1 37.08 ? C11 6OU 905 B 1 
HETATM 5 C C12 6OU . . . P 3 133.477 106.849 156.808 1 37.08 ? C12 6OU 905 B 1 
HETATM 6 C C13 6OU . . . P 3 134.015 107.38 158.149 1 37.08 ? C13 6OU 905 B 1 
HETATM 7 C C14 6OU . . . P 3 133.361 106.769 159.428 1 37.08 ? C14 6OU 905 B 1 
HETATM 8 C C15 6OU . . . P 3 134.048 107.156 160.765 1 37.08 ? C15 6OU 905 B 1 
HETATM 9 C C16 6OU . . . P 3 133.406 106.533 162.019 1 37.08 ? C16 6OU 905 B 1 
HETATM 10 O O17 6OU . . . P 3 132.39 105.909 162.002 1 37.08 ? O17 6OU 905 B 1 
HETATM 11 O O18 6OU . . . P 3 134.087 106.75 163.198 1 37.08 ? O18 6OU 905 B 1 
HETATM 12 C C19 6OU . . . P 3 134.981 105.709 163.615 1 37.08 ? C19 6OU 905 B 1 
HETATM 13 C C20 6OU . . . P 3 136.372 106.251 164.098 1 37.08 ? C20 6OU 905 B 1 
HETATM 14 C C21 6OU . . . P 3 136.363 107.809 164.3 1 37.08 ? C21 6OU 905 B 1 
HETATM 15 O O22 6OU . . . P 3 135.353 108.177 165.161 1 37.08 ? O22 6OU 905 B 1 
HETATM 16 P P23 6OU . . . P 3 135.678 108.257 166.886 1 37.08 ? P23 6OU 905 B 1 
HETATM 17 O O24 6OU . . . P 3 136.76 109.256 167.053 1 37.08 ? O24 6OU 905 B 1 
HETATM 18 O O25 6OU . . . P 3 135.763 106.842 167.347 1 37.08 -1 O25 6OU 905 B 1 
HETATM 19 O O26 6OU . . . P 3 134.26 108.925 167.607 1 37.08 ? O26 6OU 905 B 1 
HETATM 20 O O30 6OU . . . P 3 137.383 105.864 163.12 1 37.08 ? O30 6OU 905 B 1 
HETATM 21 C C31 6OU . . . P 3 138.6 106.546 163.092 1 37.08 ? C31 6OU 905 B 1 
HETATM 22 O O32 6OU . . . P 3 139.538 106.159 163.708 1 37.08 ? O32 6OU 905 B 1 
HETATM 23 C C33 6OU . . . P 3 138.667 107.818 162.207 1 37.08 ? C33 6OU 905 B 1 
HETATM 24 C C34 6OU . . . P 3 139.092 107.513 160.739 1 37.08 ? C34 6OU 905 B 1 
HETATM 25 C C35 6OU . . . P 3 138.677 108.552 159.665 1 37.08 ? C35 6OU 905 B 1 
HETATM 26 C C36 6OU . . . P 3 138.35 107.969 158.257 1 37.08 ? C36 6OU 905 B 1 
HETATM 27 C C37 6OU . . . P 3 137.916 108.979 157.163 1 37.08 ? C37 6OU 905 B 1 
HETATM 28 C C38 6OU . . . P 3 138.761 108.979 155.867 1 37.08 ? C38 6OU 905 B 1 
HETATM 29 C C39 6OU . . . P 3 137.971 108.819 154.574 1 37.08 ? C39 6OU 905 B 1 
HETATM 30 C C40 6OU . . . P 3 137.106 109.985 154.189 1 37.08 ? C40 6OU 905 B 1 
HETATM 31 C C41 6OU . . . P 3 136.93 110.436 152.938 1 37.08 ? C41 6OU 905 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#