data_7LPE # _model_server_result.job_id Pd6eRHyOAuIUQfeAZQHDmQ _model_server_result.datetime_utc '2024-11-04 22:34:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lpe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1002}' # _entry.id 7LPE # _exptl.entry_id 7LPE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 717.996 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LPE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LPE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 386 C CYS 386 1_555 A SG CYS 390 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 386 B CYS 386 1_555 B SG CYS 390 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 C SG CYS 386 A CYS 386 1_555 C SG CYS 390 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 386 D CYS 386 1_555 D SG CYS 390 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C39 H76 N O8 P' _chem_comp.formula_weight 717.996 _chem_comp.id 6OU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 6OU sing 50 n n C48 C49 6OU sing 51 n n C47 C46 6OU sing 52 n n C41 C40 6OU doub 53 z n C41 C42 6OU sing 54 n n C40 C39 6OU sing 55 n n C27 C28 6OU sing 56 n n C27 O26 6OU sing 57 n n C28 N29 6OU sing 58 n n C01 C02 6OU sing 59 n n C42 C43 6OU sing 60 n n C02 C03 6OU sing 61 n n C45 C46 6OU sing 62 n n C45 C44 6OU sing 63 n n C39 C38 6OU sing 64 n n C33 C34 6OU sing 65 n n C33 C31 6OU sing 66 n n C44 C43 6OU sing 67 n n O26 P23 6OU sing 68 n n O24 P23 6OU doub 69 n n C35 C34 6OU sing 70 n n C35 C36 6OU sing 71 n n C38 C37 6OU sing 72 n n C36 C37 6OU sing 73 n n C31 O30 6OU sing 74 n n C31 O32 6OU doub 75 n n O22 P23 6OU sing 76 n n O22 C21 6OU sing 77 n n O30 C20 6OU sing 78 n n P23 O25 6OU sing 79 n n C03 C04 6OU sing 80 n n C04 C05 6OU sing 81 n n C19 C20 6OU sing 82 n n C19 O18 6OU sing 83 n n C21 C20 6OU sing 84 n n C15 C14 6OU sing 85 n n C15 C16 6OU sing 86 n n O18 C16 6OU sing 87 n n C14 C13 6OU sing 88 n n C05 C06 6OU sing 89 n n C16 O17 6OU doub 90 n n C06 C07 6OU sing 91 n n C11 C10 6OU sing 92 n n C11 C12 6OU sing 93 n n C13 C12 6OU sing 94 n n C10 C09 6OU sing 95 n n C07 C08 6OU sing 96 n n C09 C08 6OU sing 97 n n C01 H1 6OU sing 98 n n C01 H2 6OU sing 99 n n C01 H3 6OU sing 100 n n C02 H4 6OU sing 101 n n C02 H5 6OU sing 102 n n C03 H6 6OU sing 103 n n C03 H7 6OU sing 104 n n C04 H8 6OU sing 105 n n C04 H9 6OU sing 106 n n C05 H10 6OU sing 107 n n C05 H11 6OU sing 108 n n C06 H12 6OU sing 109 n n C06 H13 6OU sing 110 n n C07 H14 6OU sing 111 n n C07 H15 6OU sing 112 n n C08 H16 6OU sing 113 n n C08 H17 6OU sing 114 n n C09 H18 6OU sing 115 n n C09 H19 6OU sing 116 n n C10 H20 6OU sing 117 n n C10 H21 6OU sing 118 n n C11 H22 6OU sing 119 n n C11 H23 6OU sing 120 n n C12 H24 6OU sing 121 n n C12 H25 6OU sing 122 n n C13 H26 6OU sing 123 n n C13 H27 6OU sing 124 n n C14 H28 6OU sing 125 n n C14 H29 6OU sing 126 n n C15 H30 6OU sing 127 n n C15 H31 6OU sing 128 n n C19 H32 6OU sing 129 n n C19 H33 6OU sing 130 n n C20 H34 6OU sing 131 n n C21 H35 6OU sing 132 n n C21 H36 6OU sing 133 n n O25 H37 6OU sing 134 n n C27 H38 6OU sing 135 n n C27 H39 6OU sing 136 n n C28 H40 6OU sing 137 n n C28 H41 6OU sing 138 n n N29 H42 6OU sing 139 n n N29 H43 6OU sing 140 n n C33 H45 6OU sing 141 n n C33 H46 6OU sing 142 n n C34 H47 6OU sing 143 n n C34 H48 6OU sing 144 n n C35 H49 6OU sing 145 n n C35 H50 6OU sing 146 n n C36 H51 6OU sing 147 n n C36 H52 6OU sing 148 n n C37 H53 6OU sing 149 n n C37 H54 6OU sing 150 n n C38 H55 6OU sing 151 n n C38 H56 6OU sing 152 n n C39 H57 6OU sing 153 n n C39 H58 6OU sing 154 n n C40 H59 6OU sing 155 n n C41 H60 6OU sing 156 n n C42 H61 6OU sing 157 n n C42 H62 6OU sing 158 n n C43 H63 6OU sing 159 n n C43 H64 6OU sing 160 n n C44 H65 6OU sing 161 n n C44 H66 6OU sing 162 n n C45 H67 6OU sing 163 n n C45 H68 6OU sing 164 n n C46 H69 6OU sing 165 n n C46 H70 6OU sing 166 n n C47 H71 6OU sing 167 n n C47 H72 6OU sing 168 n n C48 H73 6OU sing 169 n n C48 H74 6OU sing 170 n n C49 H75 6OU sing 171 n n C49 H76 6OU sing 172 n n C49 H77 6OU sing 173 n n # _atom_sites.entry_id 7LPE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LBN C 1 1001 1001 LBN PCW . F 3 6OU C 1 1002 1101 6OU PE . G 4 4DY C 1 1003 1200 4DY 4DY . H 2 LBN B 1 1001 1001 LBN PCW . I 3 6OU B 1 1002 1101 6OU PE . J 4 4DY B 1 1003 1200 4DY 4DY . K 2 LBN A 1 1001 1001 LBN PCW . L 3 6OU A 1 1002 1101 6OU PE . M 4 4DY A 1 1003 1200 4DY 4DY . N 2 LBN D 1 1001 1001 LBN PCW . O 3 6OU D 1 1002 1101 6OU PE . P 4 4DY D 1 1003 1200 4DY 4DY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C09 6OU . . . I 3 150.37 144.441 116.903 1 127.11 ? C09 6OU 1002 B 1 HETATM 2 C C10 6OU . . . I 3 151.283 144.985 115.779 1 127.11 ? C10 6OU 1002 B 1 HETATM 3 C C11 6OU . . . I 3 150.868 144.673 114.311 1 127.11 ? C11 6OU 1002 B 1 HETATM 4 C C12 6OU . . . I 3 151.141 145.796 113.256 1 127.11 ? C12 6OU 1002 B 1 HETATM 5 C C13 6OU . . . I 3 151.865 145.391 111.933 1 127.11 ? C13 6OU 1002 B 1 HETATM 6 C C14 6OU . . . I 3 151.444 146.202 110.646 1 127.11 ? C14 6OU 1002 B 1 HETATM 7 C C15 6OU . . . I 3 152.493 146.246 109.488 1 127.11 ? C15 6OU 1002 B 1 HETATM 8 C C16 6OU . . . I 3 151.871 146.485 108.089 1 127.11 ? C16 6OU 1002 B 1 HETATM 9 O O17 6OU . . . I 3 150.711 146.338 107.851 1 127.11 ? O17 6OU 1002 B 1 HETATM 10 O O18 6OU . . . I 3 152.753 146.882 107.101 1 127.11 ? O18 6OU 1002 B 1 HETATM 11 C C19 6OU . . . I 3 152.468 148.139 106.454 1 127.11 ? C19 6OU 1002 B 1 HETATM 12 C C20 6OU . . . I 3 153.757 148.873 105.936 1 127.11 ? C20 6OU 1002 B 1 HETATM 13 C C21 6OU . . . I 3 154.473 148.078 104.785 1 127.11 ? C21 6OU 1002 B 1 HETATM 14 O O22 6OU . . . I 3 153.818 148.267 103.586 1 127.11 ? O22 6OU 1002 B 1 HETATM 15 P P23 6OU . . . I 3 154.302 149.602 102.539 1 127.11 ? P23 6OU 1002 B 1 HETATM 16 O O24 6OU . . . I 3 155.725 149.37 102.193 1 127.11 ? O24 6OU 1002 B 1 HETATM 17 O O25 6OU . . . I 3 153.21 149.752 101.534 1 127.11 ? O25 6OU 1002 B 1 HETATM 18 O O26 6OU . . . I 3 154.248 151.01 103.539 1 127.11 ? O26 6OU 1002 B 1 HETATM 19 O O30 6OU . . . I 3 154.666 149.046 107.055 1 127.11 ? O30 6OU 1002 B 1 HETATM 20 C C31 6OU . . . I 3 154.834 150.322 107.581 1 127.11 ? C31 6OU 1002 B 1 HETATM 21 O O32 6OU . . . I 3 154.592 151.29 106.937 1 127.11 ? O32 6OU 1002 B 1 HETATM 22 C C33 6OU . . . I 3 155.35 150.413 109.044 1 127.11 ? C33 6OU 1002 B 1 HETATM 23 C C34 6OU . . . I 3 154.242 150.829 110.078 1 127.11 ? C34 6OU 1002 B 1 HETATM 24 C C35 6OU . . . I 3 152.865 150.08 109.994 1 127.11 ? C35 6OU 1002 B 1 HETATM 25 C C36 6OU . . . I 3 152.25 149.625 111.366 1 127.11 ? C36 6OU 1002 B 1 HETATM 26 C C37 6OU . . . I 3 152.794 150.315 112.647 1 127.11 ? C37 6OU 1002 B 1 HETATM 27 C C38 6OU . . . I 3 151.815 150.441 113.844 1 127.11 ? C38 6OU 1002 B 1 HETATM 28 C C39 6OU . . . I 3 152.206 149.654 115.103 1 127.11 ? C39 6OU 1002 B 1 HETATM 29 C C40 6OU . . . I 3 152.47 150.487 116.332 1 127.11 ? C40 6OU 1002 B 1 HETATM 30 C C41 6OU . . . I 3 151.806 150.419 117.499 1 127.11 ? C41 6OU 1002 B 1 HETATM 31 C C42 6OU . . . I 3 150.661 149.488 117.796 1 127.11 ? C42 6OU 1002 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #