data_7LPE
#
_model_server_result.job_id            kmJdY_SJTNQiEjkidfYJwQ 
_model_server_result.datetime_utc      '2024-11-04 22:33:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lpe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1003}' 
#
_entry.id    7LPE 
#
_exptl.entry_id    7LPE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              305.412 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LPE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LPE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 M N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 386 C CYS 386 1_555 A SG CYS 390 C CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 386 B CYS 386 1_555 B SG CYS 390 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 C SG CYS 386 A CYS 386 1_555 C SG CYS 390 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 D SG CYS 386 D CYS 386 1_555 D SG CYS 390 D CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C18 H27 N O3' 
_chem_comp.formula_weight    305.412 
_chem_comp.id                4DY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Capsaicin;8-Methyl-N-vanillyl-trans-6-nonenamide;NGX-4010 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C40 C38 4DY sing 1 n n 
C30 C33 4DY sing 2 n n 
C30 C27 4DY sing 3 n n 
C37 C38 4DY sing 4 n n 
C37 C36 4DY doub 5 e n 
C33 C36 4DY sing 6 n n 
C38 C44 4DY sing 7 n n 
C24 C27 4DY sing 8 n n 
C24 C22 4DY sing 9 n n 
C5 C6 4DY doub 10 n y 
C5 C4 4DY sing 11 n y 
C6 C1 4DY sing 12 n y 
N21 C22 4DY sing 13 n n 
N21 C17 4DY sing 14 n n 
C22 O23 4DY doub 15 n n 
O10 C4 4DY sing 16 n n 
C4 C3 4DY doub 17 n y 
C1 C17 4DY sing 18 n n 
C1 C2 4DY doub 19 n y 
C3 C2 4DY sing 20 n y 
C3 O12 4DY sing 21 n n 
O12 C13 4DY sing 22 n n 
C2 H2 4DY sing 23 n n 
C5 H5 4DY sing 24 n n 
C40 H40 4DY sing 25 n n 
C40 H6T 4DY sing 26 n n 
C40 H6S 4DY sing 27 n n 
C38 H38 4DY sing 28 n n 
C44 H6U 4DY sing 29 n n 
C44 H6V 4DY sing 30 n n 
C44 H44 4DY sing 31 n n 
C37 H37 4DY sing 32 n n 
C36 H36 4DY sing 33 n n 
C33 H33 4DY sing 34 n n 
C33 H6R 4DY sing 35 n n 
C30 H6Q 4DY sing 36 n n 
C30 H30 4DY sing 37 n n 
C27 H27 4DY sing 38 n n 
C27 H6P 4DY sing 39 n n 
C24 H6O 4DY sing 40 n n 
C24 H24 4DY sing 41 n n 
N21 H21 4DY sing 42 n n 
C17 H6N 4DY sing 43 n n 
C17 H17 4DY sing 44 n n 
C6 H6 4DY sing 45 n n 
O10 H10 4DY sing 46 n n 
C13 H6M 4DY sing 47 n n 
C13 H6L 4DY sing 48 n n 
C13 H13 4DY sing 49 n n 
#
_atom_sites.entry_id                     7LPE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 LBN C 1 1001 1001 LBN PCW . 
F 3 6OU C 1 1002 1101 6OU PE . 
G 4 4DY C 1 1003 1200 4DY 4DY . 
H 2 LBN B 1 1001 1001 LBN PCW . 
I 3 6OU B 1 1002 1101 6OU PE . 
J 4 4DY B 1 1003 1200 4DY 4DY . 
K 2 LBN A 1 1001 1001 LBN PCW . 
L 3 6OU A 1 1002 1101 6OU PE . 
M 4 4DY A 1 1003 1200 4DY 4DY . 
N 2 LBN D 1 1001 1001 LBN PCW . 
O 3 6OU D 1 1002 1101 6OU PE . 
P 4 4DY D 1 1003 1200 4DY 4DY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 4DY . . . M 4 157.765 130.374 128.967 1 150.04 ? C1 4DY 1003 A 1 
HETATM 2 C C2 4DY . . . M 4 159.085 130.296 129.242 1 150.04 ? C2 4DY 1003 A 1 
HETATM 3 C C3 4DY . . . M 4 159.523 130.186 130.543 1 150.04 ? C3 4DY 1003 A 1 
HETATM 4 C C4 4DY . . . M 4 158.629 130.184 131.586 1 150.04 ? C4 4DY 1003 A 1 
HETATM 5 C C5 4DY . . . M 4 157.298 130.286 131.316 1 150.04 ? C5 4DY 1003 A 1 
HETATM 6 C C40 4DY . . . M 4 157.393 124.72 118.582 1 150.04 ? C40 4DY 1003 A 1 
HETATM 7 C C38 4DY . . . M 4 157.389 126.234 118.756 1 150.04 ? C38 4DY 1003 A 1 
HETATM 8 C C44 4DY . . . M 4 156.671 126.9 117.602 1 150.04 ? C44 4DY 1003 A 1 
HETATM 9 C C37 4DY . . . M 4 156.59 126.617 119.985 1 150.04 ? C37 4DY 1003 A 1 
HETATM 10 C C36 4DY . . . M 4 157.095 126.553 121.185 1 150.04 ? C36 4DY 1003 A 1 
HETATM 11 C C33 4DY . . . M 4 156.186 126.982 122.315 1 150.04 ? C33 4DY 1003 A 1 
HETATM 12 C C30 4DY . . . M 4 156.705 126.406 123.607 1 150.04 ? C30 4DY 1003 A 1 
HETATM 13 C C27 4DY . . . M 4 156.649 127.569 124.569 1 150.04 ? C27 4DY 1003 A 1 
HETATM 14 C C24 4DY . . . M 4 156.922 127.045 125.958 1 150.04 ? C24 4DY 1003 A 1 
HETATM 15 C C22 4DY . . . M 4 156.726 128.236 126.862 1 150.04 ? C22 4DY 1003 A 1 
HETATM 16 O O23 4DY . . . M 4 155.924 128.201 127.717 1 150.04 ? O23 4DY 1003 A 1 
HETATM 17 N N21 4DY . . . M 4 157.536 129.401 126.678 1 150.04 ? N21 4DY 1003 A 1 
HETATM 18 C C17 4DY . . . M 4 157.301 130.527 127.534 1 150.04 ? C17 4DY 1003 A 1 
HETATM 19 C C6 4DY . . . M 4 156.875 130.383 130.006 1 150.04 ? C6 4DY 1003 A 1 
HETATM 20 O O10 4DY . . . M 4 159.046 130.078 132.911 1 150.04 ? O10 4DY 1003 A 1 
HETATM 21 O O12 4DY . . . M 4 160.888 130.071 130.782 1 150.04 ? O12 4DY 1003 A 1 
HETATM 22 C C13 4DY . . . M 4 161.553 129.523 129.688 1 150.04 ? C13 4DY 1003 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#