data_7LQ1 # _model_server_result.job_id vk-MedGdDk7ajOMgo-w2SA _model_server_result.datetime_utc '2025-02-05 06:57:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lq1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 7LQ1 # _exptl.entry_id 7LQ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.604 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(5-(6-(2-((2S,6R)-2,6-dimethylmorpholino)pyridin-4-yl)-1-oxoisoindolin-4-yl)-2-methoxypyridin-3-yl)methanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LQ1 _cell.length_a 90.551 _cell.length_b 108.59 _cell.length_c 142.424 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H29 N5 O5 S' _chem_comp.formula_weight 523.604 _chem_comp.id YA7 _chem_comp.mon_nstd_flag . _chem_comp.name N-(5-(6-(2-((2S,6R)-2,6-dimethylmorpholino)pyridin-4-yl)-1-oxoisoindolin-4-yl)-2-methoxypyridin-3-yl)methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 YA7 sing 376 n n N35 C34 YA7 sing 377 n n N35 S36 YA7 sing 378 n n O39 S36 YA7 doub 379 n n O2 C3 YA7 sing 380 n n C34 C3 YA7 doub 381 n y C34 C33 YA7 sing 382 n y C37 S36 YA7 sing 383 n n C3 N4 YA7 sing 384 n y S36 O38 YA7 doub 385 n n C33 C6 YA7 doub 386 n y N4 C5 YA7 doub 387 n y C31 N30 YA7 sing 388 n n C31 C32 YA7 sing 389 n n C6 C5 YA7 sing 390 n y C6 C7 YA7 sing 391 n n N30 C28 YA7 sing 392 n n C32 C7 YA7 doub 393 n y C32 C27 YA7 sing 394 n y C7 C8 YA7 sing 395 n y C23 C21 YA7 sing 396 n n C28 C27 YA7 sing 397 n n C28 O29 YA7 doub 398 n n C27 C26 YA7 doub 399 n y C8 C9 YA7 doub 400 n y C21 O20 YA7 sing 401 n n C21 C24 YA7 sing 402 n n C26 C9 YA7 sing 403 n y C9 C10 YA7 sing 404 n n O20 C17 YA7 sing 405 n n C24 N15 YA7 sing 406 n n C25 C10 YA7 doub 407 n y C25 C14 YA7 sing 408 n y C10 C11 YA7 sing 409 n y C17 C16 YA7 sing 410 n n C17 C19 YA7 sing 411 n n N15 C14 YA7 sing 412 n n N15 C16 YA7 sing 413 n n C14 N13 YA7 doub 414 n y C11 C12 YA7 doub 415 n y N13 C12 YA7 sing 416 n y C1 H1 YA7 sing 417 n n C1 H2 YA7 sing 418 n n C1 H3 YA7 sing 419 n n C5 H4 YA7 sing 420 n n C8 H5 YA7 sing 421 n n C11 H6 YA7 sing 422 n n C12 H7 YA7 sing 423 n n C16 H8 YA7 sing 424 n n C16 H9 YA7 sing 425 n n C17 H10 YA7 sing 426 n n C19 H11 YA7 sing 427 n n C19 H12 YA7 sing 428 n n C19 H13 YA7 sing 429 n n C21 H14 YA7 sing 430 n n C23 H15 YA7 sing 431 n n C23 H16 YA7 sing 432 n n C23 H17 YA7 sing 433 n n C24 H18 YA7 sing 434 n n C24 H19 YA7 sing 435 n n C31 H20 YA7 sing 436 n n C33 H21 YA7 sing 437 n n C37 H22 YA7 sing 438 n n C37 H23 YA7 sing 439 n n C37 H24 YA7 sing 440 n n C25 H25 YA7 sing 441 n n C26 H26 YA7 sing 442 n n N35 H27 YA7 sing 443 n n C31 H28 YA7 sing 444 n n N30 H29 YA7 sing 445 n n # _atom_sites.entry_id 7LQ1 _atom_sites.fract_transf_matrix[1][1] 0.011044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 YA7 A 1 1101 1 YA7 INX . D 4 CL A 1 1102 1 CL CL . E 5 HOH A 1 1201 10 HOH HOH . E 5 HOH A 2 1202 1 HOH HOH . E 5 HOH A 3 1203 8 HOH HOH . E 5 HOH A 4 1204 11 HOH HOH . E 5 HOH A 5 1205 9 HOH HOH . E 5 HOH A 6 1206 2 HOH HOH . F 5 HOH B 1 601 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YA7 . . . C 3 30.873 8.779 29.342 1 52.24 ? C1 YA7 1101 A 1 HETATM 2 C C3 YA7 . . . C 3 32.88 9.453 30.491 1 61.43 ? C3 YA7 1101 A 1 HETATM 3 C C5 YA7 . . . C 3 32.886 11.364 31.832 1 70.15 ? C5 YA7 1101 A 1 HETATM 4 C C6 YA7 . . . C 3 34.285 11.423 31.831 1 55.15 ? C6 YA7 1101 A 1 HETATM 5 C C7 YA7 . . . C 3 35.079 12.466 32.527 1 66.03 ? C7 YA7 1101 A 1 HETATM 6 C C8 YA7 . . . C 3 36.167 12.072 33.312 1 65.87 ? C8 YA7 1101 A 1 HETATM 7 C C11 YA7 . . . C 3 38.034 11.342 35.581 1 98.08 ? C11 YA7 1101 A 1 HETATM 8 C C12 YA7 . . . C 3 39.153 10.912 36.273 1 104.36 ? C12 YA7 1101 A 1 HETATM 9 N N13 YA7 . . . C 3 40.301 11.569 36.194 1 96.48 ? N13 YA7 1101 A 1 HETATM 10 C C16 YA7 . . . C 3 41.965 14.476 36.235 1 107.79 ? C16 YA7 1101 A 1 HETATM 11 C C17 YA7 . . . C 3 42.54 15.594 35.345 1 122.53 ? C17 YA7 1101 A 1 HETATM 12 C C19 YA7 . . . C 3 43.237 16.625 36.241 1 115.28 ? C19 YA7 1101 A 1 HETATM 13 O O20 YA7 . . . C 3 43.489 15.076 34.39 1 116.02 ? O20 YA7 1101 A 1 HETATM 14 C C21 YA7 . . . C 3 43.033 14.002 33.554 1 99.23 ? C21 YA7 1101 A 1 HETATM 15 C C23 YA7 . . . C 3 44.127 13.568 32.574 1 82.74 ? C23 YA7 1101 A 1 HETATM 16 C C24 YA7 . . . C 3 42.673 12.817 34.46 1 110.37 ? C24 YA7 1101 A 1 HETATM 17 C C27 YA7 . . . C 3 35.569 14.777 33.061 1 86.53 ? C27 YA7 1101 A 1 HETATM 18 O O29 YA7 . . . C 3 35.474 17.16 33.139 1 82.26 ? O29 YA7 1101 A 1 HETATM 19 C C31 YA7 . . . C 3 33.723 14.588 31.647 1 69.77 ? C31 YA7 1101 A 1 HETATM 20 C C32 YA7 . . . C 3 34.784 13.821 32.395 1 77.14 ? C32 YA7 1101 A 1 HETATM 21 C C33 YA7 . . . C 3 34.98 10.446 31.122 1 55.49 ? C33 YA7 1101 A 1 HETATM 22 C C34 YA7 . . . C 3 34.28 9.456 30.451 1 58.39 ? C34 YA7 1101 A 1 HETATM 23 C C37 YA7 . . . C 3 37.651 8.302 30.484 1 58.58 ? C37 YA7 1101 A 1 HETATM 24 O O2 YA7 . . . C 3 32.187 8.484 29.835 1 69.15 ? O2 YA7 1101 A 1 HETATM 25 N N4 YA7 . . . C 3 32.241 10.399 31.179 1 68.75 ? N4 YA7 1101 A 1 HETATM 26 C C9 YA7 . . . C 3 36.952 13.007 33.989 1 75.33 ? C9 YA7 1101 A 1 HETATM 27 C C10 YA7 . . . C 3 38.109 12.509 34.788 1 90.56 ? C10 YA7 1101 A 1 HETATM 28 C C14 YA7 . . . C 3 40.422 12.664 35.456 1 92.67 ? C14 YA7 1101 A 1 HETATM 29 N N15 YA7 . . . C 3 41.647 13.304 35.397 1 105.4 ? N15 YA7 1101 A 1 HETATM 30 C C25 YA7 . . . C 3 39.349 13.161 34.718 1 90.69 ? C25 YA7 1101 A 1 HETATM 31 C C26 YA7 . . . C 3 36.658 14.37 33.852 1 83.07 ? C26 YA7 1101 A 1 HETATM 32 C C28 YA7 . . . C 3 35.025 16.111 32.738 1 78.1 ? C28 YA7 1101 A 1 HETATM 33 N N30 YA7 . . . C 3 33.972 16.006 31.918 1 73.73 ? N30 YA7 1101 A 1 HETATM 34 N N35 YA7 . . . C 3 35.024 8.505 29.756 1 62.3 ? N35 YA7 1101 A 1 HETATM 35 S S36 YA7 . . . C 3 36.041 7.483 30.571 1 74.92 ? S36 YA7 1101 A 1 HETATM 36 O O38 YA7 . . . C 3 35.586 7.499 31.918 1 61.22 ? O38 YA7 1101 A 1 HETATM 37 O O39 YA7 . . . C 3 36.057 6.284 29.8 1 56.05 ? O39 YA7 1101 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 451 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #