data_7LQ7 # _model_server_result.job_id 2SEes7wgayGwQyKCDJLrIQ _model_server_result.datetime_utc '2024-10-11 07:13:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":601}' # _entry.id 7LQ7 # _exptl.entry_id 7LQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.22 _cell.angle_gamma 90 _cell.entry_id 7LQ7 _cell.length_a 172.218 _cell.length_b 122.742 _cell.length_c 175.459 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 P N N ? 6 Q N N ? 6 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 336 1_555 A SG CYS 29 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 47 A CYS 379 1_555 A SG CYS 100 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 59 A CYS 391 1_555 A SG CYS 193 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 148 A CYS 480 1_555 A SG CYS 156 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 B SG CYS 4 B CYS 336 1_555 B SG CYS 29 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 B SG CYS 47 B CYS 379 1_555 B SG CYS 100 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 B SG CYS 59 B CYS 391 1_555 B SG CYS 193 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 B SG CYS 148 B CYS 480 1_555 B SG CYS 156 B CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf9 C SG CYS 22 C CYS 22 1_555 C SG CYS 93 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 C SG CYS 148 C CYS 140 1_555 C SG CYS 204 C CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf11 C SG CYS 224 C CYS 216 1_555 D SG CYS 215 D CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 D SG CYS 22 D CYS 23 1_555 D SG CYS 90 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 D SG CYS 138 D CYS 134 1_555 D SG CYS 197 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 E SG CYS 4 E CYS 336 1_555 E SG CYS 29 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf15 E SG CYS 47 E CYS 379 1_555 E SG CYS 100 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf16 E SG CYS 59 E CYS 391 1_555 E SG CYS 193 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf17 E SG CYS 148 E CYS 480 1_555 E SG CYS 156 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf18 F SG CYS 22 F CYS 22 1_555 F SG CYS 93 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf19 F SG CYS 148 F CYS 140 1_555 F SG CYS 204 F CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? disulf ? disulf20 F SG CYS 224 F CYS 216 1_555 G SG CYS 215 G CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf21 G SG CYS 22 G CYS 23 1_555 G SG CYS 90 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf22 G SG CYS 138 G CYS 134 1_555 G SG CYS 197 G CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf23 H SG CYS 22 L CYS 23 1_555 H SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf24 H SG CYS 138 L CYS 134 1_555 H SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf25 I SG CYS 22 T CYS 22 1_555 I SG CYS 96 T CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf26 I SG CYS 156 T CYS 140 1_555 I SG CYS 212 T CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf27 J SG CYS 23 U CYS 23 1_555 J SG CYS 88 U CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf28 J SG CYS 134 U CYS 134 1_555 J SG CYS 194 U CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf29 K SG CYS 22 P CYS 22 1_555 K SG CYS 96 P CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf30 K SG CYS 156 P CYS 140 1_555 K SG CYS 212 P CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf31 L SG CYS 22 y CYS 22 1_555 L SG CYS 96 y CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf32 L SG CYS 156 y CYS 140 1_555 L SG CYS 212 y CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf33 M SG CYS 22 H CYS 22 1_555 M SG CYS 93 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf34 M SG CYS 148 H CYS 140 1_555 M SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf35 N SG CYS 23 Q CYS 23 1_555 N SG CYS 88 Q CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf36 N SG CYS 134 Q CYS 134 1_555 N SG CYS 194 Q CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf37 O SG CYS 23 z CYS 23 1_555 O SG CYS 88 z CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf38 O SG CYS 134 z CYS 134 1_555 O SG CYS 194 z CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 11 A ASN 343 1_555 P C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 B ND2 ASN 11 B ASN 343 1_555 Q C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 E ND2 ASN 11 E ASN 343 1_555 R C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7LQ7 _atom_sites.fract_transf_matrix[1][1] 0.005807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 6 NAG A 1 601 528 NAG NAG . Q 6 NAG B 1 601 528 NAG NAG . R 6 NAG E 1 601 528 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . P 6 -25.976 45.922 -121.931 1 183.62 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . P 6 -27.33 45.873 -122.667 1 182.15 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . P 6 -27.434 44.614 -123.548 1 180.15 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . P 6 -26.214 44.48 -124.48 1 184.96 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . P 6 -24.911 44.525 -123.66 1 181.93 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . P 6 -23.616 44.376 -124.491 1 176.95 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . P 6 -29.51 46.809 -121.926 1 163.28 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . P 6 -30.701 46.566 -121.046 1 149.16 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . P 6 -28.459 45.992 -121.743 1 172.52 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . P 6 -28.65 44.632 -124.316 1 177.01 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . P 6 -26.27 43.282 -125.28 1 182.61 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . P 6 -24.873 45.708 -122.841 1 195.24 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . P 6 -23.267 45.493 -125.336 1 169.37 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . P 6 -29.525 47.709 -122.749 1 172.83 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #