data_7LQJ # _model_server_result.job_id yYtnbL9Muu605-klhBxzYg _model_server_result.datetime_utc '2024-11-25 19:48:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 7LQJ # _exptl.entry_id 7LQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.09 _cell.angle_gamma 90 _cell.entry_id 7LQJ _cell.length_a 88.484 _cell.length_b 86.866 _cell.length_c 81.145 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -8.608716 0 80.687056 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc11 B O ALA . A ALA 801 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7LQJ _atom_sites.fract_transf_matrix[1][1] 0.011302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001205 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALA A 1 801 801 ALA ALA . C 3 NA A 1 802 901 NA NA . D 3 NA A 1 803 1001 NA NA . E 4 BOG A 1 804 1101 BOG BOG . F 4 BOG A 1 805 1201 BOG BOG . G 4 BOG A 1 806 1301 BOG BOG . H 4 BOG A 1 807 1401 BOG BOG . I 4 BOG A 1 808 1501 BOG BOG . J 5 HOH A 1 901 96 HOH HOH . J 5 HOH A 2 902 77 HOH HOH . J 5 HOH A 3 903 95 HOH HOH . J 5 HOH A 4 904 79 HOH HOH . J 5 HOH A 5 905 31 HOH HOH . J 5 HOH A 6 906 84 HOH HOH . J 5 HOH A 7 907 136 HOH HOH . J 5 HOH A 8 908 94 HOH HOH . J 5 HOH A 9 909 38 HOH HOH . J 5 HOH A 10 910 7 HOH HOH . J 5 HOH A 11 911 131 HOH HOH . J 5 HOH A 12 912 62 HOH HOH . J 5 HOH A 13 913 134 HOH HOH . J 5 HOH A 14 914 24 HOH HOH . J 5 HOH A 15 915 74 HOH HOH . J 5 HOH A 16 916 111 HOH HOH . J 5 HOH A 17 917 98 HOH HOH . J 5 HOH A 18 918 16 HOH HOH . J 5 HOH A 19 919 27 HOH HOH . J 5 HOH A 20 920 117 HOH HOH . J 5 HOH A 21 921 69 HOH HOH . J 5 HOH A 22 922 41 HOH HOH . J 5 HOH A 23 923 47 HOH HOH . J 5 HOH A 24 924 48 HOH HOH . J 5 HOH A 25 925 89 HOH HOH . J 5 HOH A 26 926 133 HOH HOH . J 5 HOH A 27 927 50 HOH HOH . J 5 HOH A 28 928 10 HOH HOH . J 5 HOH A 29 929 3 HOH HOH . J 5 HOH A 30 930 22 HOH HOH . J 5 HOH A 31 931 34 HOH HOH . J 5 HOH A 32 932 49 HOH HOH . J 5 HOH A 33 933 82 HOH HOH . J 5 HOH A 34 934 58 HOH HOH . J 5 HOH A 35 935 72 HOH HOH . J 5 HOH A 36 936 46 HOH HOH . J 5 HOH A 37 937 8 HOH HOH . J 5 HOH A 38 938 63 HOH HOH . J 5 HOH A 39 939 32 HOH HOH . J 5 HOH A 40 940 30 HOH HOH . J 5 HOH A 41 941 66 HOH HOH . J 5 HOH A 42 942 13 HOH HOH . J 5 HOH A 43 943 75 HOH HOH . J 5 HOH A 44 944 137 HOH HOH . J 5 HOH A 45 945 23 HOH HOH . J 5 HOH A 46 946 61 HOH HOH . J 5 HOH A 47 947 40 HOH HOH . J 5 HOH A 48 948 11 HOH HOH . J 5 HOH A 49 949 67 HOH HOH . J 5 HOH A 50 950 113 HOH HOH . J 5 HOH A 51 951 39 HOH HOH . J 5 HOH A 52 952 80 HOH HOH . J 5 HOH A 53 953 118 HOH HOH . J 5 HOH A 54 954 132 HOH HOH . J 5 HOH A 55 955 33 HOH HOH . J 5 HOH A 56 956 126 HOH HOH . J 5 HOH A 57 957 104 HOH HOH . J 5 HOH A 58 958 127 HOH HOH . J 5 HOH A 59 959 78 HOH HOH . J 5 HOH A 60 960 5 HOH HOH . J 5 HOH A 61 961 4 HOH HOH . J 5 HOH A 62 962 43 HOH HOH . J 5 HOH A 63 963 64 HOH HOH . J 5 HOH A 64 964 14 HOH HOH . J 5 HOH A 65 965 12 HOH HOH . J 5 HOH A 66 966 86 HOH HOH . J 5 HOH A 67 967 99 HOH HOH . J 5 HOH A 68 968 2 HOH HOH . J 5 HOH A 69 969 29 HOH HOH . J 5 HOH A 70 970 87 HOH HOH . J 5 HOH A 71 971 44 HOH HOH . J 5 HOH A 72 972 20 HOH HOH . J 5 HOH A 73 973 28 HOH HOH . J 5 HOH A 74 974 128 HOH HOH . J 5 HOH A 75 975 36 HOH HOH . J 5 HOH A 76 976 18 HOH HOH . J 5 HOH A 77 977 107 HOH HOH . J 5 HOH A 78 978 108 HOH HOH . J 5 HOH A 79 979 19 HOH HOH . J 5 HOH A 80 980 17 HOH HOH . J 5 HOH A 81 981 52 HOH HOH . J 5 HOH A 82 982 37 HOH HOH . J 5 HOH A 83 983 109 HOH HOH . J 5 HOH A 84 984 55 HOH HOH . J 5 HOH A 85 985 42 HOH HOH . J 5 HOH A 86 986 105 HOH HOH . J 5 HOH A 87 987 15 HOH HOH . J 5 HOH A 88 988 101 HOH HOH . J 5 HOH A 89 989 88 HOH HOH . J 5 HOH A 90 990 83 HOH HOH . J 5 HOH A 91 991 53 HOH HOH . J 5 HOH A 92 992 56 HOH HOH . J 5 HOH A 93 993 122 HOH HOH . J 5 HOH A 94 994 35 HOH HOH . J 5 HOH A 95 995 73 HOH HOH . J 5 HOH A 96 996 112 HOH HOH . J 5 HOH A 97 997 54 HOH HOH . J 5 HOH A 98 998 26 HOH HOH . J 5 HOH A 99 999 65 HOH HOH . J 5 HOH A 100 1000 21 HOH HOH . J 5 HOH A 101 1001 100 HOH HOH . J 5 HOH A 102 1002 97 HOH HOH . J 5 HOH A 103 1003 115 HOH HOH . J 5 HOH A 104 1004 91 HOH HOH . J 5 HOH A 105 1005 25 HOH HOH . J 5 HOH A 106 1006 76 HOH HOH . J 5 HOH A 107 1007 9 HOH HOH . J 5 HOH A 108 1008 90 HOH HOH . J 5 HOH A 109 1009 51 HOH HOH . J 5 HOH A 110 1010 120 HOH HOH . J 5 HOH A 111 1011 71 HOH HOH . J 5 HOH A 112 1012 135 HOH HOH . J 5 HOH A 113 1013 92 HOH HOH . J 5 HOH A 114 1014 123 HOH HOH . J 5 HOH A 115 1015 114 HOH HOH . J 5 HOH A 116 1017 106 HOH HOH . J 5 HOH A 117 1018 138 HOH HOH . J 5 HOH A 118 1019 45 HOH HOH . J 5 HOH A 119 1020 81 HOH HOH . J 5 HOH A 120 1021 130 HOH HOH . J 5 HOH A 121 1022 85 HOH HOH . J 5 HOH A 122 1023 129 HOH HOH . J 5 HOH A 123 1024 125 HOH HOH . J 5 HOH A 124 1025 124 HOH HOH . J 5 HOH A 125 1026 70 HOH HOH . J 5 HOH A 126 1027 68 HOH HOH . J 5 HOH A 127 1028 102 HOH HOH . J 5 HOH A 128 1029 110 HOH HOH . J 5 HOH A 129 1030 121 HOH HOH . J 5 HOH A 130 1031 59 HOH HOH . J 5 HOH A 131 1032 60 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -14.868 _atom_site.Cartn_y -10.933 _atom_site.Cartn_z 14.452 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 803 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #