data_7LQK # _model_server_result.job_id dnfBtMoobrSaiauV5xlolw _model_server_result.datetime_utc '2024-10-14 11:25:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lqk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 7LQK # _exptl.entry_id 7LQK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.64 _cell.angle_gamma 90 _cell.entry_id 7LQK _cell.length_a 87.575 _cell.length_b 86.621 _cell.length_c 80.991 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LQK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -7.959607 0 80.598925 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc11 B O ALA . A ALA 801 1_555 C NA NA . A NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7LQK _atom_sites.fract_transf_matrix[1][1] 0.011419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001128 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALA A 1 801 801 ALA ALA . C 3 NA A 1 802 901 NA NA . D 3 NA A 1 803 1001 NA NA . E 4 BOG A 1 804 1101 BOG BOG . F 4 BOG A 1 805 1201 BOG BOG . G 4 BOG A 1 806 1301 BOG BOG . H 4 BOG A 1 807 1401 BOG BOG . I 4 BOG A 1 808 1501 BOG BOG . J 5 HOH A 1 901 53 HOH HOH . J 5 HOH A 2 902 51 HOH HOH . J 5 HOH A 3 903 9 HOH HOH . J 5 HOH A 4 904 40 HOH HOH . J 5 HOH A 5 905 2 HOH HOH . J 5 HOH A 6 906 33 HOH HOH . J 5 HOH A 7 907 22 HOH HOH . J 5 HOH A 8 908 39 HOH HOH . J 5 HOH A 9 909 10 HOH HOH . J 5 HOH A 10 910 6 HOH HOH . J 5 HOH A 11 911 7 HOH HOH . J 5 HOH A 12 912 26 HOH HOH . J 5 HOH A 13 913 46 HOH HOH . J 5 HOH A 14 914 18 HOH HOH . J 5 HOH A 15 915 21 HOH HOH . J 5 HOH A 16 916 8 HOH HOH . J 5 HOH A 17 917 52 HOH HOH . J 5 HOH A 18 918 30 HOH HOH . J 5 HOH A 19 919 35 HOH HOH . J 5 HOH A 20 920 25 HOH HOH . J 5 HOH A 21 921 17 HOH HOH . J 5 HOH A 22 922 1 HOH HOH . J 5 HOH A 23 923 19 HOH HOH . J 5 HOH A 24 924 15 HOH HOH . J 5 HOH A 25 925 16 HOH HOH . J 5 HOH A 26 926 29 HOH HOH . J 5 HOH A 27 927 38 HOH HOH . J 5 HOH A 28 928 5 HOH HOH . J 5 HOH A 29 929 11 HOH HOH . J 5 HOH A 30 930 44 HOH HOH . J 5 HOH A 31 931 3 HOH HOH . J 5 HOH A 32 932 23 HOH HOH . J 5 HOH A 33 933 28 HOH HOH . J 5 HOH A 34 934 48 HOH HOH . J 5 HOH A 35 935 20 HOH HOH . J 5 HOH A 36 936 32 HOH HOH . J 5 HOH A 37 937 56 HOH HOH . J 5 HOH A 38 938 13 HOH HOH . J 5 HOH A 39 939 14 HOH HOH . J 5 HOH A 40 940 50 HOH HOH . J 5 HOH A 41 941 24 HOH HOH . J 5 HOH A 42 942 12 HOH HOH . J 5 HOH A 43 943 49 HOH HOH . J 5 HOH A 44 944 54 HOH HOH . J 5 HOH A 45 945 31 HOH HOH . J 5 HOH A 46 946 42 HOH HOH . J 5 HOH A 47 947 34 HOH HOH . J 5 HOH A 48 948 45 HOH HOH . J 5 HOH A 49 949 36 HOH HOH . J 5 HOH A 50 950 43 HOH HOH . J 5 HOH A 51 951 57 HOH HOH . J 5 HOH A 52 952 4 HOH HOH . J 5 HOH A 53 953 27 HOH HOH . J 5 HOH A 54 954 41 HOH HOH . J 5 HOH A 55 955 37 HOH HOH . J 5 HOH A 56 956 55 HOH HOH . J 5 HOH A 57 957 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . F 4 10.509 -25.088 15.735 1 125.75 ? C1 BOG 805 A 1 HETATM 2 O O1 BOG . . . F 4 10.177 -23.812 16.077 1 112.46 ? O1 BOG 805 A 1 HETATM 3 C C2 BOG . . . F 4 11.958 -25.321 16.135 1 136.98 ? C2 BOG 805 A 1 HETATM 4 O O2 BOG . . . F 4 12.803 -24.52 15.286 1 143.63 ? O2 BOG 805 A 1 HETATM 5 C C3 BOG . . . F 4 12.382 -26.735 16.011 1 137.29 ? C3 BOG 805 A 1 HETATM 6 O O3 BOG . . . F 4 12.897 -27.186 17.309 1 141.99 ? O3 BOG 805 A 1 HETATM 7 C C4 BOG . . . F 4 11.275 -27.655 15.581 1 128.9 ? C4 BOG 805 A 1 HETATM 8 O O4 BOG . . . F 4 11.032 -27.459 14.18 1 128.64 ? O4 BOG 805 A 1 HETATM 9 C C5 BOG . . . F 4 9.967 -27.441 16.342 1 119.54 ? C5 BOG 805 A 1 HETATM 10 O O5 BOG . . . F 4 9.556 -26.028 16.418 1 123.85 ? O5 BOG 805 A 1 HETATM 11 C C6 BOG . . . F 4 10.105 -27.965 17.759 1 107.05 ? C6 BOG 805 A 1 HETATM 12 O O6 BOG . . . F 4 10.678 -29.259 17.75 1 101.89 ? O6 BOG 805 A 1 HETATM 13 C C1' BOG . . . F 4 9.031 -23.271 15.397 1 98.74 ? C1' BOG 805 A 1 HETATM 14 C C2' BOG . . . F 4 9.068 -21.725 15.524 1 87.54 ? C2' BOG 805 A 1 HETATM 15 C C3' BOG . . . F 4 8.727 -21.057 14.172 1 78.55 ? C3' BOG 805 A 1 HETATM 16 C C4' BOG . . . F 4 7.228 -20.574 14.159 1 75.23 ? C4' BOG 805 A 1 HETATM 17 C C5' BOG . . . F 4 7.191 -19.024 14.028 1 80.31 ? C5' BOG 805 A 1 HETATM 18 C C6' BOG . . . F 4 7.364 -18.632 12.546 1 91.52 ? C6' BOG 805 A 1 HETATM 19 C C7' BOG . . . F 4 5.988 -18.265 11.916 1 101.42 ? C7' BOG 805 A 1 HETATM 20 C C8' BOG . . . F 4 4.989 -19.405 12.123 1 110.95 ? C8' BOG 805 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #