data_7LQL # _model_server_result.job_id y8sjaVU-K33DhcXNi6Dj3g _model_server_result.datetime_utc '2024-11-25 19:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 7LQL # _exptl.entry_id 7LQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.32 _cell.angle_gamma 90 _cell.entry_id 7LQL _cell.length_a 86.629 _cell.length_b 87.059 _cell.length_c 80.589 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -7.472063 0 80.241854 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc11 C NA NA . A NA 602 1_555 D O ALA . A ALA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7LQL _atom_sites.fract_transf_matrix[1][1] 0.011544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001074 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 601 NA NA . C 2 NA A 1 602 701 NA NA . D 3 ALA A 1 603 801 ALA ALA . E 4 BOG A 1 604 901 BOG BOG . F 4 BOG A 1 605 1001 BOG BOG . G 4 BOG A 1 606 1101 BOG BOG . H 4 BOG A 1 607 1301 BOG BOG . I 5 HOH A 1 701 16 HOH HOH . I 5 HOH A 2 702 1 HOH HOH . I 5 HOH A 3 703 4 HOH HOH . I 5 HOH A 4 704 11 HOH HOH . I 5 HOH A 5 705 7 HOH HOH . I 5 HOH A 6 706 14 HOH HOH . I 5 HOH A 7 707 13 HOH HOH . I 5 HOH A 8 708 18 HOH HOH . I 5 HOH A 9 709 6 HOH HOH . I 5 HOH A 10 710 5 HOH HOH . I 5 HOH A 11 711 2 HOH HOH . I 5 HOH A 12 712 20 HOH HOH . I 5 HOH A 13 713 12 HOH HOH . I 5 HOH A 14 714 17 HOH HOH . I 5 HOH A 15 715 10 HOH HOH . I 5 HOH A 16 716 32 HOH HOH . I 5 HOH A 17 717 22 HOH HOH . I 5 HOH A 18 718 9 HOH HOH . I 5 HOH A 19 719 31 HOH HOH . I 5 HOH A 20 720 8 HOH HOH . I 5 HOH A 21 721 3 HOH HOH . I 5 HOH A 22 722 33 HOH HOH . I 5 HOH A 23 723 30 HOH HOH . I 5 HOH A 24 724 21 HOH HOH . I 5 HOH A 25 725 25 HOH HOH . I 5 HOH A 26 726 15 HOH HOH . I 5 HOH A 27 727 24 HOH HOH . I 5 HOH A 28 728 19 HOH HOH . I 5 HOH A 29 729 28 HOH HOH . I 5 HOH A 30 730 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . F 4 -43.166 -2.177 12.131 1 80.52 ? C1 BOG 605 A 1 HETATM 2 O O1 BOG . . . F 4 -42.291 -3.172 12.412 1 75.74 ? O1 BOG 605 A 1 HETATM 3 C C2 BOG . . . F 4 -44.619 -2.498 12.437 1 75.33 ? C2 BOG 605 A 1 HETATM 4 O O2 BOG . . . F 4 -45.034 -3.626 11.668 1 77.88 ? O2 BOG 605 A 1 HETATM 5 C C3 BOG . . . F 4 -45.473 -1.337 12.069 1 74.71 ? C3 BOG 605 A 1 HETATM 6 O O3 BOG . . . F 4 -46.884 -1.663 12.262 1 77.18 ? O3 BOG 605 A 1 HETATM 7 C C4 BOG . . . F 4 -45.145 -0.128 12.885 1 77.48 ? C4 BOG 605 A 1 HETATM 8 O O4 BOG . . . F 4 -45.852 1.003 12.351 1 71.91 ? O4 BOG 605 A 1 HETATM 9 C C5 BOG . . . F 4 -43.657 0.192 12.869 1 74.59 ? C5 BOG 605 A 1 HETATM 10 O O5 BOG . . . F 4 -42.73 -0.953 12.911 1 81.42 ? O5 BOG 605 A 1 HETATM 11 C C6 BOG . . . F 4 -43.383 1.048 14.109 1 69.87 ? C6 BOG 605 A 1 HETATM 12 O O6 BOG . . . F 4 -42.081 1.598 14.063 1 71.64 ? O6 BOG 605 A 1 HETATM 13 C C1' BOG . . . F 4 -42.699 -4.171 13.341 1 70.84 ? C1' BOG 605 A 1 HETATM 14 C C2' BOG . . . F 4 -41.499 -5.121 13.593 1 64.39 ? C2' BOG 605 A 1 HETATM 15 C C3' BOG . . . F 4 -41.501 -5.55 15.081 1 64.07 ? C3' BOG 605 A 1 HETATM 16 C C4' BOG . . . F 4 -40.418 -6.67 15.31 1 67.18 ? C4' BOG 605 A 1 HETATM 17 C C5' BOG . . . F 4 -41.038 -7.834 16.138 1 71.45 ? C5' BOG 605 A 1 HETATM 18 C C6' BOG . . . F 4 -40.657 -7.69 17.628 1 61.62 ? C6' BOG 605 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #