data_7LQY
#
_model_server_result.job_id            t0AjUG2AJ6YpKlvq2TAVxQ 
_model_server_result.datetime_utc      '2024-10-20 23:45:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lqy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":903}' 
#
_entry.id    7LQY 
#
_exptl.entry_id    7LQY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              837.069 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoinositol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LQY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LQY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 R N N 
? 3 AA N N 
? 3 MA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 645 A GLY 645 1_555 O NA NA . A NA 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc2 O NA NA . A NA 911 1_555 B O GLY 645 B GLY 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc3 O NA NA . A NA 911 1_555 C O GLY 645 C GLY 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc4 O NA NA . A NA 911 1_555 D O GLY 645 D GLY 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
#
_chem_comp.formula           'C43 H81 O13 P' 
_chem_comp.formula_weight    837.069 
_chem_comp.id                YBG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoinositol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C9 YBG sing 507 n n 
C8 C7 YBG sing 508 n n 
C7 C6 YBG sing 509 n n 
C6 C5 YBG sing 510 n n 
C5 C4 YBG sing 511 n n 
C4 C3 YBG sing 512 n n 
C3 C2 YBG sing 513 n n 
C2 C1 YBG sing 514 n n 
C1 C10 YBG doub 515 e n 
C10 C11 YBG sing 516 n n 
C11 C12 YBG sing 517 n n 
C13 C12 YBG sing 518 n n 
C13 C14 YBG sing 519 n n 
C15 C14 YBG sing 520 n n 
C15 C16 YBG sing 521 n n 
C28 C29 YBG sing 522 n n 
C28 C27 YBG sing 523 n n 
C26 C25 YBG sing 524 n n 
C26 C27 YBG sing 525 n n 
C25 C24 YBG sing 526 n n 
C16 C17 YBG sing 527 n n 
C24 C23 YBG sing 528 n n 
C17 C18 YBG sing 529 n n 
C22 C23 YBG sing 530 n n 
C22 C21 YBG sing 531 n n 
O1 C18 YBG doub 532 n n 
C18 O2 YBG sing 533 n n 
C21 O4 YBG doub 534 n n 
C21 O3 YBG sing 535 n n 
O3 C20 YBG sing 536 n n 
O2 C19 YBG sing 537 n n 
C20 C19 YBG sing 538 n n 
C19 C37 YBG sing 539 n n 
C37 O5 YBG sing 540 n n 
O6 P1 YBG doub 541 n n 
O5 P1 YBG sing 542 n n 
P1 O7 YBG sing 543 n n 
P1 O8 YBG sing 544 n n 
O8 C38 YBG sing 545 n n 
C43 C38 YBG sing 546 n n 
C43 O13 YBG sing 547 n n 
C43 C42 YBG sing 548 n n 
C38 C39 YBG sing 549 n n 
C42 O12 YBG sing 550 n n 
C42 C41 YBG sing 551 n n 
O9 C39 YBG sing 552 n n 
C39 C40 YBG sing 553 n n 
C40 C41 YBG sing 554 n n 
C40 O10 YBG sing 555 n n 
C41 O11 YBG sing 556 n n 
C4 H1 YBG sing 557 n n 
C4 H2 YBG sing 558 n n 
C5 H3 YBG sing 559 n n 
C5 H4 YBG sing 560 n n 
C6 H5 YBG sing 561 n n 
C6 H6 YBG sing 562 n n 
C7 H7 YBG sing 563 n n 
C7 H8 YBG sing 564 n n 
C8 H9 YBG sing 565 n n 
C8 H10 YBG sing 566 n n 
C10 H11 YBG sing 567 n n 
C13 H12 YBG sing 568 n n 
C13 H13 YBG sing 569 n n 
C15 H14 YBG sing 570 n n 
C15 H15 YBG sing 571 n n 
C17 H16 YBG sing 572 n n 
C17 H17 YBG sing 573 n n 
C20 H18 YBG sing 574 n n 
C20 H19 YBG sing 575 n n 
C22 H20 YBG sing 576 n n 
C22 H21 YBG sing 577 n n 
C24 H22 YBG sing 578 n n 
C24 H23 YBG sing 579 n n 
C26 H24 YBG sing 580 n n 
C26 H25 YBG sing 581 n n 
C28 H26 YBG sing 582 n n 
C28 H27 YBG sing 583 n n 
C1 H28 YBG sing 584 n n 
C11 H29 YBG sing 585 n n 
C11 H30 YBG sing 586 n n 
C12 H31 YBG sing 587 n n 
C12 H32 YBG sing 588 n n 
C14 H33 YBG sing 589 n n 
C14 H34 YBG sing 590 n n 
C16 H35 YBG sing 591 n n 
C16 H36 YBG sing 592 n n 
C19 H37 YBG sing 593 n n 
C2 H38 YBG sing 594 n n 
C2 H39 YBG sing 595 n n 
C23 H40 YBG sing 596 n n 
C23 H41 YBG sing 597 n n 
C25 H42 YBG sing 598 n n 
C25 H43 YBG sing 599 n n 
C27 H44 YBG sing 600 n n 
C27 H45 YBG sing 601 n n 
C29 H46 YBG sing 602 n n 
C29 H47 YBG sing 603 n n 
C3 H49 YBG sing 604 n n 
C3 H50 YBG sing 605 n n 
C37 H51 YBG sing 606 n n 
C37 H52 YBG sing 607 n n 
C38 H53 YBG sing 608 n n 
C39 H54 YBG sing 609 n n 
C40 H55 YBG sing 610 n n 
C41 H56 YBG sing 611 n n 
C42 H57 YBG sing 612 n n 
C43 H58 YBG sing 613 n n 
C9 H59 YBG sing 614 n n 
C9 H60 YBG sing 615 n n 
C9 H61 YBG sing 616 n n 
O10 H62 YBG sing 617 n n 
O11 H63 YBG sing 618 n n 
O12 H64 YBG sing 619 n n 
O13 H65 YBG sing 620 n n 
O7 H66 YBG sing 621 n n 
O9 H67 YBG sing 622 n n 
C29 C30 YBG sing 623 n n 
C30 C31 YBG sing 624 n n 
C31 C32 YBG sing 625 n n 
C32 C33 YBG sing 626 n n 
C33 C34 YBG sing 627 n n 
C34 C35 YBG sing 628 n n 
C35 C36 YBG sing 629 n n 
C30 H48 YBG sing 630 n n 
C30 H68 YBG sing 631 n n 
C31 H69 YBG sing 632 n n 
C31 H70 YBG sing 633 n n 
C32 H71 YBG sing 634 n n 
C32 H72 YBG sing 635 n n 
C33 H73 YBG sing 636 n n 
C33 H74 YBG sing 637 n n 
C34 H75 YBG sing 638 n n 
C34 H76 YBG sing 639 n n 
C35 H77 YBG sing 640 n n 
C35 H78 YBG sing 641 n n 
C36 H79 YBG sing 642 n n 
C36 H80 YBG sing 643 n n 
C36 H81 YBG sing 644 n n 
#
_atom_sites.entry_id                     7LQY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV A 1 901 901 POV POV . 
F 2 POV A 1 902 902 POV POV . 
G 3 YBG A 1 903 904 YBG LIG . 
H 2 POV A 1 904 905 POV POV . 
I 2 POV A 1 905 906 POV POV . 
J 2 POV A 1 906 909 POV POV . 
K 2 POV A 1 907 903 POV POV . 
L 2 POV A 1 908 907 POV POV . 
M 2 POV A 1 909 908 POV POV . 
N 4 CL A 1 910 1 CL CL . 
O 5 NA A 1 911 2 NA NA . 
P 2 POV B 1 901 901 POV POV . 
Q 2 POV B 1 902 902 POV POV . 
R 3 YBG B 1 903 904 YBG LIG . 
S 2 POV B 1 904 905 POV POV . 
T 2 POV B 1 905 906 POV POV . 
U 2 POV B 1 906 909 POV POV . 
V 2 POV B 1 907 903 POV POV . 
W 2 POV B 1 908 907 POV POV . 
X 2 POV B 1 909 908 POV POV . 
Y 2 POV C 1 901 901 POV POV . 
Z 2 POV C 1 902 902 POV POV . 
AA 3 YBG C 1 903 904 YBG LIG . 
BA 2 POV C 1 904 905 POV POV . 
CA 2 POV C 1 905 906 POV POV . 
DA 2 POV C 1 906 909 POV POV . 
EA 2 POV C 1 907 903 POV POV . 
FA 2 POV C 1 908 907 POV POV . 
GA 2 POV C 1 909 908 POV POV . 
HA 2 POV D 1 901 903 POV POV . 
IA 2 POV D 1 902 907 POV POV . 
JA 2 POV D 1 903 908 POV POV . 
KA 2 POV D 1 904 901 POV POV . 
LA 2 POV D 1 905 902 POV POV . 
MA 3 YBG D 1 906 904 YBG LIG . 
NA 2 POV D 1 907 905 POV POV . 
OA 2 POV D 1 908 906 POV POV . 
PA 2 POV D 1 909 909 POV POV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 YBG . . . G 3 134.087 113.085 116.376 1 25.48 ? C4 YBG 903 A 1 
HETATM 2 C C5 YBG . . . G 3 135.013 112.594 115.273 1 25.48 ? C5 YBG 903 A 1 
HETATM 3 C C6 YBG . . . G 3 134.257 111.915 114.137 1 25.48 ? C6 YBG 903 A 1 
HETATM 4 C C7 YBG . . . G 3 133.078 112.741 113.641 1 25.48 ? C7 YBG 903 A 1 
HETATM 5 C C8 YBG . . . G 3 132.388 112.071 112.461 1 25.48 ? C8 YBG 903 A 1 
HETATM 6 C C10 YBG . . . G 3 134.071 113.369 119.973 1 25.48 ? C10 YBG 903 A 1 
HETATM 7 C C13 YBG . . . G 3 136.614 114.598 122.161 1 25.48 ? C13 YBG 903 A 1 
HETATM 8 C C15 YBG . . . G 3 137.236 112.119 122.597 1 25.48 ? C15 YBG 903 A 1 
HETATM 9 C C17 YBG . . . G 3 137.964 111.506 124.931 1 25.48 ? C17 YBG 903 A 1 
HETATM 10 C C20 YBG . . . G 3 135.354 111.909 127.532 1 25.48 ? C20 YBG 903 A 1 
HETATM 11 C C21 YBG . . . G 3 134.135 112.858 125.78 1 25.48 ? C21 YBG 903 A 1 
HETATM 12 C C22 YBG . . . G 3 132.864 112.614 124.985 1 25.48 ? C22 YBG 903 A 1 
HETATM 13 C C24 YBG . . . G 3 130.561 113.475 124.463 1 25.48 ? C24 YBG 903 A 1 
HETATM 14 C C26 YBG . . . G 3 129.479 111.944 122.768 1 25.48 ? C26 YBG 903 A 1 
HETATM 15 C C28 YBG . . . G 3 128.677 109.551 122.715 1 25.48 ? C28 YBG 903 A 1 
HETATM 16 C C1 YBG . . . G 3 133.011 113.477 119.204 1 25.48 ? C1 YBG 903 A 1 
HETATM 17 C C11 YBG . . . G 3 134.44 114.529 120.886 1 25.48 ? C11 YBG 903 A 1 
HETATM 18 C C12 YBG . . . G 3 135.188 114.061 122.125 1 25.48 ? C12 YBG 903 A 1 
HETATM 19 C C14 YBG . . . G 3 137.71 113.55 122.364 1 25.48 ? C14 YBG 903 A 1 
HETATM 20 C C16 YBG . . . G 3 138.222 111.322 123.442 1 25.48 ? C16 YBG 903 A 1 
HETATM 21 C C18 YBG . . . G 3 137.565 110.187 125.574 1 25.48 ? C18 YBG 903 A 1 
HETATM 22 C C19 YBG . . . G 3 136.693 111.191 127.577 1 25.48 ? C19 YBG 903 A 1 
HETATM 23 C C2 YBG . . . G 3 132.615 112.334 118.277 1 25.48 ? C2 YBG 903 A 1 
HETATM 24 C C23 YBG . . . G 3 131.935 113.817 125.024 1 25.48 ? C23 YBG 903 A 1 
HETATM 25 C C25 YBG . . . G 3 130.656 112.865 123.068 1 25.48 ? C25 YBG 903 A 1 
HETATM 26 C C27 YBG . . . G 3 129.679 110.534 123.316 1 25.48 ? C27 YBG 903 A 1 
HETATM 27 C C29 YBG . . . G 3 129.147 108.103 122.813 1 25.48 ? C29 YBG 903 A 1 
HETATM 28 C C3 YBG . . . G 3 133.754 111.956 117.339 1 25.48 ? C3 YBG 903 A 1 
HETATM 29 C C37 YBG . . . G 3 136.894 110.644 128.986 1 25.48 ? C37 YBG 903 A 1 
HETATM 30 C C38 YBG . . . G 3 135.24 109.561 132.582 1 25.48 ? C38 YBG 903 A 1 
HETATM 31 C C39 YBG . . . G 3 135.322 108.847 133.935 1 25.48 ? C39 YBG 903 A 1 
HETATM 32 C C40 YBG . . . G 3 133.944 108.389 134.389 1 25.48 ? C40 YBG 903 A 1 
HETATM 33 C C41 YBG . . . G 3 133.049 109.602 134.626 1 25.48 ? C41 YBG 903 A 1 
HETATM 34 C C42 YBG . . . G 3 132.954 110.574 133.441 1 25.48 ? C42 YBG 903 A 1 
HETATM 35 C C43 YBG . . . G 3 134.154 110.642 132.472 1 25.48 ? C43 YBG 903 A 1 
HETATM 36 C C9 YBG . . . G 3 131.001 111.575 112.848 1 25.48 ? C9 YBG 903 A 1 
HETATM 37 O O1 YBG . . . G 3 138.008 109.19 125.118 1 25.48 ? O1 YBG 903 A 1 
HETATM 38 O O10 YBG . . . G 3 134.095 107.704 135.604 1 25.48 ? O10 YBG 903 A 1 
HETATM 39 O O11 YBG . . . G 3 133.573 110.309 135.716 1 25.48 ? O11 YBG 903 A 1 
HETATM 40 O O12 YBG . . . G 3 132.798 111.855 133.991 1 25.48 ? O12 YBG 903 A 1 
HETATM 41 O O13 YBG . . . G 3 134.765 111.896 132.63 1 25.48 ? O13 YBG 903 A 1 
HETATM 42 O O2 YBG . . . G 3 136.68 110.13 126.664 1 25.48 ? O2 YBG 903 A 1 
HETATM 43 O O3 YBG . . . G 3 134.883 111.773 126.23 1 25.48 ? O3 YBG 903 A 1 
HETATM 44 O O4 YBG . . . G 3 134.485 113.961 126.013 1 25.48 ? O4 YBG 903 A 1 
HETATM 45 O O5 YBG . . . G 3 135.7 110.121 129.49 1 25.48 ? O5 YBG 903 A 1 
HETATM 46 O O6 YBG . . . G 3 135.117 107.63 129.252 1 25.48 -1 O6 YBG 903 A 1 
HETATM 47 O O7 YBG . . . G 3 137.196 108.242 130.39 1 25.48 ? O7 YBG 903 A 1 
HETATM 48 O O8 YBG . . . G 3 134.96 108.595 131.611 1 25.48 ? O8 YBG 903 A 1 
HETATM 49 O O9 YBG . . . G 3 136.125 107.708 133.791 1 25.48 ? O9 YBG 903 A 1 
HETATM 50 P P1 YBG . . . G 3 135.759 108.628 130.175 1 25.48 ? P1 YBG 903 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    155 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           50 
#