data_7LR3 # _model_server_result.job_id N4tG8X9S16maemA3n7JFfw _model_server_result.datetime_utc '2024-10-10 02:23:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lr3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":702}' # _entry.id 7LR3 # _exptl.entry_id 7LR3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LR3 _cell.length_a 78.25 _cell.length_b 122.58 _cell.length_c 168.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LR3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 16 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K 1 1 D,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 133 L CYS 133 1_555 A SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 144 H CYS 144 1_555 B SG CYS 199 H CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 12 D CYS 513 1_555 C SG CYS 22 D CYS 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 C SG CYS 45 D CYS 546 1_555 C SG CYS 91 D CYS 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 D SG CYS 12 C CYS 513 1_555 D SG CYS 22 C CYS 523 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 D SG CYS 12 C CYS 513 1_555 D SG CYS 22 C CYS 523 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 E SG CYS 22 A CYS 22 1_555 E SG CYS 96 A CYS 96 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 E SG CYS 22 A CYS 22 1_555 E SG CYS 96 A CYS 96 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 E SG CYS 144 A CYS 144 1_555 E SG CYS 199 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 F SG CYS 23 B CYS 23 1_555 F SG CYS 88 B CYS 88 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.04 ? disulf ? disulf13 F SG CYS 23 B CYS 23 1_555 F SG CYS 88 B CYS 88 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 F SG CYS 133 B CYS 133 1_555 F SG CYS 193 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 C C GLU 102 D GLU 603 1_555 C N CSD 103 D CSD 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 C C CSD 103 D CSD 604 1_555 C N SER 104 D SER 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 98 n n N1 C6 EPE sing 99 n n N1 C9 EPE sing 100 n n C2 C3 EPE sing 101 n n C2 H21 EPE sing 102 n n C2 H22 EPE sing 103 n n C3 N4 EPE sing 104 n n C3 H31 EPE sing 105 n n C3 H32 EPE sing 106 n n N4 C5 EPE sing 107 n n N4 C7 EPE sing 108 n n C5 C6 EPE sing 109 n n C5 H51 EPE sing 110 n n C5 H52 EPE sing 111 n n C6 H61 EPE sing 112 n n C6 H62 EPE sing 113 n n C7 C8 EPE sing 114 n n C7 H71 EPE sing 115 n n C7 H72 EPE sing 116 n n C8 O8 EPE sing 117 n n C8 H81 EPE sing 118 n n C8 H82 EPE sing 119 n n O8 HO8 EPE sing 120 n n C9 C10 EPE sing 121 n n C9 H91 EPE sing 122 n n C9 H92 EPE sing 123 n n C10 S EPE sing 124 n n C10 H101 EPE sing 125 n n C10 H102 EPE sing 126 n n S O1S EPE doub 127 n n S O2S EPE doub 128 n n S O3S EPE sing 129 n n O3S HOS3 EPE sing 130 n n # _atom_sites.entry_id 7LR3 _atom_sites.fract_transf_matrix[1][1] 0.01278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 PEG D 1 701 701 PEG PEG . H 6 EPE D 1 702 702 EPE EPE . I 7 HOH L 1 301 301 HOH HOH . I 7 HOH L 2 302 302 HOH HOH . I 7 HOH L 3 303 303 HOH HOH . I 7 HOH L 4 304 304 HOH HOH . I 7 HOH L 5 305 305 HOH HOH . I 7 HOH L 6 306 306 HOH HOH . J 7 HOH H 1 301 301 HOH HOH . J 7 HOH H 2 302 302 HOH HOH . J 7 HOH H 3 303 303 HOH HOH . J 7 HOH H 4 304 304 HOH HOH . J 7 HOH H 5 305 305 HOH HOH . J 7 HOH H 6 306 306 HOH HOH . J 7 HOH H 7 307 307 HOH HOH . K 7 HOH D 1 801 801 HOH HOH . K 7 HOH D 2 802 802 HOH HOH . K 7 HOH D 3 803 803 HOH HOH . K 7 HOH D 4 804 804 HOH HOH . K 7 HOH D 5 805 805 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . H 6 0.124 60.909 74.747 0.5 90.29 ? N1 EPE 702 D 1 HETATM 2 C C2 EPE . . . H 6 -0.277 60.837 76.158 0.5 98.61 ? C2 EPE 702 D 1 HETATM 3 C C3 EPE . . . H 6 -0.642 59.41 76.534 0.5 103.62 ? C3 EPE 702 D 1 HETATM 4 N N4 EPE . . . H 6 -1.625 58.842 75.644 0.5 100.84 ? N4 EPE 702 D 1 HETATM 5 C C5 EPE . . . H 6 -1.456 59.086 74.227 0.5 93.96 ? C5 EPE 702 D 1 HETATM 6 C C6 EPE . . . H 6 -1.007 60.505 73.901 0.5 89.26 ? C6 EPE 702 D 1 HETATM 7 C C7 EPE . . . H 6 -2.298 57.623 76.059 0.5 108.04 ? C7 EPE 702 D 1 HETATM 8 C C8 EPE . . . H 6 -2.683 57.617 77.537 0.5 109.66 ? C8 EPE 702 D 1 HETATM 9 O O8 EPE . . . H 6 -1.635 57.096 78.326 0.5 89.57 ? O8 EPE 702 D 1 HETATM 10 C C9 EPE . . . H 6 0.452 62.31 74.456 0.5 92.89 ? C9 EPE 702 D 1 HETATM 11 C C10 EPE . . . H 6 1.755 62.683 75.149 0.5 94.99 ? C10 EPE 702 D 1 HETATM 12 S S EPE . . . H 6 1.633 64.281 75.99 0.5 104.94 ? S EPE 702 D 1 HETATM 13 O O1S EPE . . . H 6 1.355 65.323 75.005 0.5 107.94 ? O1S EPE 702 D 1 HETATM 14 O O2S EPE . . . H 6 2.891 64.58 76.669 0.5 108.45 ? O2S EPE 702 D 1 HETATM 15 O O3S EPE . . . H 6 0.555 64.244 76.975 0.5 103.77 ? O3S EPE 702 D 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #