data_7LR5
#
_model_server_result.job_id            a5_wDh9wwjbvqUxMYXIaWw 
_model_server_result.datetime_utc      '2024-10-19 14:16:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lr5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    7LR5 
#
_exptl.entry_id    7LR5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LR5 
_cell.length_a            54.63 
_cell.length_b            60.92 
_cell.length_c            63.16 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LR5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 C CYS 96 1_555 B SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
covale ? covale1 A SG CYS 98 C CYS 98 1_555 C CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? 
covale ? covale2 A SG CYS 101 C CYS 101 1_555 C CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? 
covale ? covale3 B SG CYS 98 A CYS 98 1_555 E CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? 
covale ? covale4 B SG CYS 101 A CYS 101 1_555 E CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
metalc ? metalc1 A SD MET 7 C MET 7 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc2 A NE2 HIS 60 C HIS 60 1_555 D NI NI . C NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc3 A NE2 HIS 67 C HIS 67 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc4 A NE2 HIS 71 C HIS 71 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc5 A NE2 HIS 100 C HIS 100 1_555 D NI NI . C NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc6 A NE2 HIS 102 C HIS 102 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc7 A NE2 HIS 104 C HIS 104 1_555 D NI NI . C NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc8 D NI NI . C NI 202 1_555 G O HOH . C HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc9 D NI NI . C NI 202 1_555 B NE2 HIS 67 A HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc10 D NI NI . C NI 202 1_555 B NE2 HIS 71 A HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc11 B SD MET 7 A MET 7 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc12 B NE2 HIS 60 A HIS 60 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc13 B NE2 HIS 100 A HIS 100 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc14 B NE2 HIS 102 A HIS 102 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc15 B NE2 HIS 104 A HIS 104 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc16 F NI NI . A NI 202 1_555 H O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7LR5 
_atom_sites.fract_transf_matrix[1][1]    0.018305 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016415 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015833 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEC C 1 201 150 HEC HEM . 
D 3 NI C 1 202 1 NI NI . 
E 2 HEC A 1 201 150 HEC HEM . 
F 3 NI A 1 202 2 NI NI . 
G 4 HOH C 1 301 75 HOH HOH . 
G 4 HOH C 2 302 48 HOH HOH . 
G 4 HOH C 3 303 130 HOH HOH . 
G 4 HOH C 4 304 101 HOH HOH . 
G 4 HOH C 5 305 103 HOH HOH . 
G 4 HOH C 6 306 83 HOH HOH . 
G 4 HOH C 7 307 106 HOH HOH . 
G 4 HOH C 8 308 98 HOH HOH . 
G 4 HOH C 9 309 44 HOH HOH . 
G 4 HOH C 10 310 135 HOH HOH . 
G 4 HOH C 11 311 149 HOH HOH . 
G 4 HOH C 12 312 67 HOH HOH . 
G 4 HOH C 13 313 141 HOH HOH . 
G 4 HOH C 14 314 23 HOH HOH . 
G 4 HOH C 15 315 60 HOH HOH . 
G 4 HOH C 16 316 24 HOH HOH . 
G 4 HOH C 17 317 20 HOH HOH . 
G 4 HOH C 18 318 102 HOH HOH . 
G 4 HOH C 19 319 69 HOH HOH . 
G 4 HOH C 20 320 155 HOH HOH . 
G 4 HOH C 21 321 96 HOH HOH . 
G 4 HOH C 22 322 169 HOH HOH . 
G 4 HOH C 23 323 21 HOH HOH . 
G 4 HOH C 24 324 137 HOH HOH . 
G 4 HOH C 25 325 146 HOH HOH . 
G 4 HOH C 26 326 46 HOH HOH . 
G 4 HOH C 27 327 14 HOH HOH . 
G 4 HOH C 28 328 8 HOH HOH . 
G 4 HOH C 29 329 19 HOH HOH . 
G 4 HOH C 30 330 34 HOH HOH . 
G 4 HOH C 31 331 64 HOH HOH . 
G 4 HOH C 32 332 26 HOH HOH . 
G 4 HOH C 33 333 174 HOH HOH . 
G 4 HOH C 34 334 31 HOH HOH . 
G 4 HOH C 35 335 1 HOH HOH . 
G 4 HOH C 36 336 62 HOH HOH . 
G 4 HOH C 37 337 49 HOH HOH . 
G 4 HOH C 38 338 126 HOH HOH . 
G 4 HOH C 39 339 138 HOH HOH . 
G 4 HOH C 40 340 39 HOH HOH . 
G 4 HOH C 41 341 119 HOH HOH . 
G 4 HOH C 42 342 162 HOH HOH . 
G 4 HOH C 43 343 36 HOH HOH . 
G 4 HOH C 44 344 115 HOH HOH . 
G 4 HOH C 45 345 68 HOH HOH . 
G 4 HOH C 46 346 40 HOH HOH . 
G 4 HOH C 47 347 11 HOH HOH . 
G 4 HOH C 48 348 165 HOH HOH . 
G 4 HOH C 49 349 55 HOH HOH . 
G 4 HOH C 50 350 127 HOH HOH . 
G 4 HOH C 51 351 6 HOH HOH . 
G 4 HOH C 52 352 73 HOH HOH . 
G 4 HOH C 53 353 38 HOH HOH . 
G 4 HOH C 54 354 134 HOH HOH . 
G 4 HOH C 55 355 109 HOH HOH . 
G 4 HOH C 56 356 66 HOH HOH . 
G 4 HOH C 57 357 118 HOH HOH . 
G 4 HOH C 58 358 29 HOH HOH . 
G 4 HOH C 59 359 7 HOH HOH . 
G 4 HOH C 60 360 116 HOH HOH . 
G 4 HOH C 61 361 59 HOH HOH . 
G 4 HOH C 62 362 153 HOH HOH . 
G 4 HOH C 63 363 41 HOH HOH . 
G 4 HOH C 64 364 4 HOH HOH . 
G 4 HOH C 65 365 52 HOH HOH . 
G 4 HOH C 66 366 25 HOH HOH . 
G 4 HOH C 67 367 88 HOH HOH . 
G 4 HOH C 68 368 78 HOH HOH . 
G 4 HOH C 69 369 45 HOH HOH . 
G 4 HOH C 70 370 152 HOH HOH . 
G 4 HOH C 71 371 47 HOH HOH . 
G 4 HOH C 72 372 105 HOH HOH . 
G 4 HOH C 73 373 124 HOH HOH . 
G 4 HOH C 74 374 123 HOH HOH . 
G 4 HOH C 75 375 85 HOH HOH . 
G 4 HOH C 76 376 82 HOH HOH . 
G 4 HOH C 77 377 30 HOH HOH . 
G 4 HOH C 78 378 54 HOH HOH . 
G 4 HOH C 79 379 93 HOH HOH . 
G 4 HOH C 80 380 100 HOH HOH . 
G 4 HOH C 81 381 163 HOH HOH . 
G 4 HOH C 82 382 76 HOH HOH . 
G 4 HOH C 83 383 151 HOH HOH . 
G 4 HOH C 84 384 61 HOH HOH . 
G 4 HOH C 85 385 164 HOH HOH . 
G 4 HOH C 86 386 158 HOH HOH . 
G 4 HOH C 87 387 114 HOH HOH . 
G 4 HOH C 88 388 10 HOH HOH . 
G 4 HOH C 89 389 79 HOH HOH . 
G 4 HOH C 90 390 92 HOH HOH . 
G 4 HOH C 91 391 97 HOH HOH . 
G 4 HOH C 92 392 159 HOH HOH . 
G 4 HOH C 93 393 81 HOH HOH . 
G 4 HOH C 94 394 84 HOH HOH . 
G 4 HOH C 95 395 33 HOH HOH . 
G 4 HOH C 96 396 65 HOH HOH . 
G 4 HOH C 97 397 111 HOH HOH . 
G 4 HOH C 98 398 107 HOH HOH . 
G 4 HOH C 99 399 148 HOH HOH . 
H 4 HOH A 1 301 122 HOH HOH . 
H 4 HOH A 2 302 160 HOH HOH . 
H 4 HOH A 3 303 161 HOH HOH . 
H 4 HOH A 4 304 133 HOH HOH . 
H 4 HOH A 5 305 32 HOH HOH . 
H 4 HOH A 6 306 139 HOH HOH . 
H 4 HOH A 7 307 51 HOH HOH . 
H 4 HOH A 8 308 37 HOH HOH . 
H 4 HOH A 9 309 12 HOH HOH . 
H 4 HOH A 10 310 113 HOH HOH . 
H 4 HOH A 11 311 53 HOH HOH . 
H 4 HOH A 12 312 171 HOH HOH . 
H 4 HOH A 13 313 17 HOH HOH . 
H 4 HOH A 14 314 120 HOH HOH . 
H 4 HOH A 15 315 58 HOH HOH . 
H 4 HOH A 16 316 27 HOH HOH . 
H 4 HOH A 17 317 56 HOH HOH . 
H 4 HOH A 18 318 89 HOH HOH . 
H 4 HOH A 19 319 16 HOH HOH . 
H 4 HOH A 20 320 18 HOH HOH . 
H 4 HOH A 21 321 90 HOH HOH . 
H 4 HOH A 22 322 35 HOH HOH . 
H 4 HOH A 23 323 91 HOH HOH . 
H 4 HOH A 24 324 50 HOH HOH . 
H 4 HOH A 25 325 86 HOH HOH . 
H 4 HOH A 26 326 121 HOH HOH . 
H 4 HOH A 27 327 154 HOH HOH . 
H 4 HOH A 28 328 2 HOH HOH . 
H 4 HOH A 29 329 108 HOH HOH . 
H 4 HOH A 30 330 9 HOH HOH . 
H 4 HOH A 31 331 99 HOH HOH . 
H 4 HOH A 32 332 13 HOH HOH . 
H 4 HOH A 33 333 156 HOH HOH . 
H 4 HOH A 34 334 94 HOH HOH . 
H 4 HOH A 35 335 42 HOH HOH . 
H 4 HOH A 36 336 143 HOH HOH . 
H 4 HOH A 37 337 3 HOH HOH . 
H 4 HOH A 38 338 63 HOH HOH . 
H 4 HOH A 39 339 15 HOH HOH . 
H 4 HOH A 40 340 70 HOH HOH . 
H 4 HOH A 41 341 142 HOH HOH . 
H 4 HOH A 42 342 145 HOH HOH . 
H 4 HOH A 43 343 5 HOH HOH . 
H 4 HOH A 44 344 28 HOH HOH . 
H 4 HOH A 45 345 112 HOH HOH . 
H 4 HOH A 46 346 110 HOH HOH . 
H 4 HOH A 47 347 74 HOH HOH . 
H 4 HOH A 48 348 170 HOH HOH . 
H 4 HOH A 49 349 166 HOH HOH . 
H 4 HOH A 50 350 71 HOH HOH . 
H 4 HOH A 51 351 22 HOH HOH . 
H 4 HOH A 52 352 150 HOH HOH . 
H 4 HOH A 53 353 167 HOH HOH . 
H 4 HOH A 54 354 77 HOH HOH . 
H 4 HOH A 55 355 128 HOH HOH . 
H 4 HOH A 56 356 104 HOH HOH . 
H 4 HOH A 57 357 144 HOH HOH . 
H 4 HOH A 58 358 157 HOH HOH . 
H 4 HOH A 59 359 132 HOH HOH . 
H 4 HOH A 60 360 173 HOH HOH . 
H 4 HOH A 61 361 129 HOH HOH . 
H 4 HOH A 62 362 117 HOH HOH . 
H 4 HOH A 63 363 57 HOH HOH . 
H 4 HOH A 64 364 87 HOH HOH . 
H 4 HOH A 65 365 172 HOH HOH . 
H 4 HOH A 66 366 72 HOH HOH . 
H 4 HOH A 67 367 43 HOH HOH . 
H 4 HOH A 68 368 140 HOH HOH . 
H 4 HOH A 69 369 125 HOH HOH . 
H 4 HOH A 70 370 147 HOH HOH . 
H 4 HOH A 71 371 136 HOH HOH . 
H 4 HOH A 72 372 168 HOH HOH . 
H 4 HOH A 73 373 131 HOH HOH . 
H 4 HOH A 74 374 95 HOH HOH . 
H 4 HOH A 75 375 80 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               5.796 
_atom_site.Cartn_y               -2.382 
_atom_site.Cartn_z               -29.582 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        17.56 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#