data_7LRA # _model_server_result.job_id R3tSYNM4RC-a6-mM9Lrxrg _model_server_result.datetime_utc '2024-11-15 21:32:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 7LRA # _exptl.entry_id 7LRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LRA _cell.length_a 54.76 _cell.length_b 61 _cell.length_c 64.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 C CYS 96 1_555 B SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale1 A SG CYS 98 C CYS 98 1_555 C CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? covale ? covale2 A SG CYS 101 C CYS 101 1_555 C CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? covale ? covale3 B SG CYS 98 A CYS 98 1_555 E CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? covale ? covale4 B SG CYS 101 A CYS 101 1_555 E CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc1 A SD MET 7 C MET 7 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc2 A NE2 HIS 60 C HIS 60 1_555 D NI NI . C NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 A NE2 HIS 67 C HIS 67 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc4 A NE2 HIS 71 C HIS 71 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc5 A NE2 HIS 100 C HIS 100 1_555 D NI NI . C NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc6 A NE2 HIS 102 C HIS 102 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc7 A NE2 HIS 104 C HIS 104 1_555 D NI NI . C NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc8 D NI NI . C NI 202 1_555 G O HOH . C HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc9 D NI NI . C NI 202 1_555 B NE2 HIS 67 A HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc10 D NI NI . C NI 202 1_555 B NE2 HIS 71 A HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc11 B SD MET 7 A MET 7 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc12 B NE2 HIS 60 A HIS 60 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc13 B NE2 HIS 100 A HIS 100 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc14 B NE2 HIS 102 A HIS 102 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc15 B NE2 HIS 104 A HIS 104 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc16 F NI NI . A NI 202 1_555 H O HOH . A HOH 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7LRA _atom_sites.fract_transf_matrix[1][1] 0.018262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC C 1 201 150 HEC HEM . D 3 NI C 1 202 1 NI NI . E 2 HEC A 1 201 150 HEC HEM . F 3 NI A 1 202 2 NI NI . G 4 HOH C 1 301 142 HOH HOH . G 4 HOH C 2 302 101 HOH HOH . G 4 HOH C 3 303 128 HOH HOH . G 4 HOH C 4 304 146 HOH HOH . G 4 HOH C 5 305 203 HOH HOH . G 4 HOH C 6 306 120 HOH HOH . G 4 HOH C 7 307 48 HOH HOH . G 4 HOH C 8 308 236 HOH HOH . G 4 HOH C 9 309 237 HOH HOH . G 4 HOH C 10 310 138 HOH HOH . G 4 HOH C 11 311 212 HOH HOH . G 4 HOH C 12 312 14 HOH HOH . G 4 HOH C 13 313 60 HOH HOH . G 4 HOH C 14 314 52 HOH HOH . G 4 HOH C 15 315 23 HOH HOH . G 4 HOH C 16 316 16 HOH HOH . G 4 HOH C 17 317 97 HOH HOH . G 4 HOH C 18 318 59 HOH HOH . G 4 HOH C 19 319 112 HOH HOH . G 4 HOH C 20 320 10 HOH HOH . G 4 HOH C 21 321 7 HOH HOH . G 4 HOH C 22 322 46 HOH HOH . G 4 HOH C 23 323 213 HOH HOH . G 4 HOH C 24 324 39 HOH HOH . G 4 HOH C 25 325 83 HOH HOH . G 4 HOH C 26 326 111 HOH HOH . G 4 HOH C 27 327 35 HOH HOH . G 4 HOH C 28 328 56 HOH HOH . G 4 HOH C 29 329 118 HOH HOH . G 4 HOH C 30 330 76 HOH HOH . G 4 HOH C 31 331 28 HOH HOH . G 4 HOH C 32 332 84 HOH HOH . G 4 HOH C 33 333 90 HOH HOH . G 4 HOH C 34 334 41 HOH HOH . G 4 HOH C 35 335 134 HOH HOH . G 4 HOH C 36 336 15 HOH HOH . G 4 HOH C 37 337 240 HOH HOH . G 4 HOH C 38 338 95 HOH HOH . G 4 HOH C 39 339 132 HOH HOH . G 4 HOH C 40 340 25 HOH HOH . G 4 HOH C 41 341 174 HOH HOH . G 4 HOH C 42 342 91 HOH HOH . G 4 HOH C 43 343 125 HOH HOH . G 4 HOH C 44 344 201 HOH HOH . G 4 HOH C 45 345 169 HOH HOH . G 4 HOH C 46 346 180 HOH HOH . G 4 HOH C 47 347 139 HOH HOH . G 4 HOH C 48 348 150 HOH HOH . G 4 HOH C 49 349 54 HOH HOH . G 4 HOH C 50 350 4 HOH HOH . G 4 HOH C 51 351 73 HOH HOH . G 4 HOH C 52 352 8 HOH HOH . G 4 HOH C 53 353 29 HOH HOH . G 4 HOH C 54 354 62 HOH HOH . G 4 HOH C 55 355 185 HOH HOH . G 4 HOH C 56 356 233 HOH HOH . G 4 HOH C 57 357 19 HOH HOH . G 4 HOH C 58 358 224 HOH HOH . G 4 HOH C 59 359 147 HOH HOH . G 4 HOH C 60 360 189 HOH HOH . G 4 HOH C 61 361 92 HOH HOH . G 4 HOH C 62 362 12 HOH HOH . G 4 HOH C 63 363 215 HOH HOH . G 4 HOH C 64 364 178 HOH HOH . G 4 HOH C 65 365 51 HOH HOH . G 4 HOH C 66 366 107 HOH HOH . G 4 HOH C 67 367 159 HOH HOH . G 4 HOH C 68 368 77 HOH HOH . G 4 HOH C 69 369 105 HOH HOH . G 4 HOH C 70 370 127 HOH HOH . G 4 HOH C 71 371 5 HOH HOH . G 4 HOH C 72 372 45 HOH HOH . G 4 HOH C 73 373 148 HOH HOH . G 4 HOH C 74 374 197 HOH HOH . G 4 HOH C 75 375 88 HOH HOH . G 4 HOH C 76 376 33 HOH HOH . G 4 HOH C 77 377 64 HOH HOH . G 4 HOH C 78 378 43 HOH HOH . G 4 HOH C 79 379 102 HOH HOH . G 4 HOH C 80 380 137 HOH HOH . G 4 HOH C 81 381 66 HOH HOH . G 4 HOH C 82 382 245 HOH HOH . G 4 HOH C 83 383 1 HOH HOH . G 4 HOH C 84 384 26 HOH HOH . G 4 HOH C 85 385 47 HOH HOH . G 4 HOH C 86 386 217 HOH HOH . G 4 HOH C 87 387 24 HOH HOH . G 4 HOH C 88 388 161 HOH HOH . G 4 HOH C 89 389 89 HOH HOH . G 4 HOH C 90 390 193 HOH HOH . G 4 HOH C 91 391 74 HOH HOH . G 4 HOH C 92 392 154 HOH HOH . G 4 HOH C 93 393 206 HOH HOH . G 4 HOH C 94 394 246 HOH HOH . G 4 HOH C 95 395 106 HOH HOH . G 4 HOH C 96 396 177 HOH HOH . G 4 HOH C 97 397 210 HOH HOH . G 4 HOH C 98 398 249 HOH HOH . G 4 HOH C 99 399 188 HOH HOH . G 4 HOH C 100 400 78 HOH HOH . G 4 HOH C 101 401 166 HOH HOH . G 4 HOH C 102 402 200 HOH HOH . G 4 HOH C 103 403 235 HOH HOH . G 4 HOH C 104 404 65 HOH HOH . G 4 HOH C 105 405 129 HOH HOH . G 4 HOH C 106 406 34 HOH HOH . G 4 HOH C 107 407 100 HOH HOH . G 4 HOH C 108 408 208 HOH HOH . G 4 HOH C 109 409 182 HOH HOH . G 4 HOH C 110 410 231 HOH HOH . G 4 HOH C 111 411 149 HOH HOH . G 4 HOH C 112 412 93 HOH HOH . G 4 HOH C 113 413 57 HOH HOH . G 4 HOH C 114 414 184 HOH HOH . G 4 HOH C 115 415 205 HOH HOH . G 4 HOH C 116 416 191 HOH HOH . G 4 HOH C 117 417 170 HOH HOH . G 4 HOH C 118 418 133 HOH HOH . G 4 HOH C 119 419 143 HOH HOH . G 4 HOH C 120 420 195 HOH HOH . G 4 HOH C 121 421 37 HOH HOH . G 4 HOH C 122 422 124 HOH HOH . G 4 HOH C 123 423 187 HOH HOH . G 4 HOH C 124 424 50 HOH HOH . G 4 HOH C 125 425 214 HOH HOH . G 4 HOH C 126 426 167 HOH HOH . G 4 HOH C 127 427 145 HOH HOH . G 4 HOH C 128 428 219 HOH HOH . G 4 HOH C 129 429 179 HOH HOH . G 4 HOH C 130 430 61 HOH HOH . G 4 HOH C 131 431 163 HOH HOH . G 4 HOH C 132 432 81 HOH HOH . G 4 HOH C 133 433 164 HOH HOH . G 4 HOH C 134 434 49 HOH HOH . G 4 HOH C 135 435 204 HOH HOH . G 4 HOH C 136 436 199 HOH HOH . G 4 HOH C 137 437 38 HOH HOH . G 4 HOH C 138 438 151 HOH HOH . G 4 HOH C 139 439 86 HOH HOH . G 4 HOH C 140 440 75 HOH HOH . G 4 HOH C 141 441 242 HOH HOH . G 4 HOH C 142 442 136 HOH HOH . H 4 HOH A 1 301 116 HOH HOH . H 4 HOH A 2 302 172 HOH HOH . H 4 HOH A 3 303 103 HOH HOH . H 4 HOH A 4 304 162 HOH HOH . H 4 HOH A 5 305 104 HOH HOH . H 4 HOH A 6 306 141 HOH HOH . H 4 HOH A 7 307 165 HOH HOH . H 4 HOH A 8 308 228 HOH HOH . H 4 HOH A 9 309 211 HOH HOH . H 4 HOH A 10 310 126 HOH HOH . H 4 HOH A 11 311 218 HOH HOH . H 4 HOH A 12 312 18 HOH HOH . H 4 HOH A 13 313 144 HOH HOH . H 4 HOH A 14 314 40 HOH HOH . H 4 HOH A 15 315 115 HOH HOH . H 4 HOH A 16 316 175 HOH HOH . H 4 HOH A 17 317 130 HOH HOH . H 4 HOH A 18 318 82 HOH HOH . H 4 HOH A 19 319 131 HOH HOH . H 4 HOH A 20 320 22 HOH HOH . H 4 HOH A 21 321 80 HOH HOH . H 4 HOH A 22 322 42 HOH HOH . H 4 HOH A 23 323 152 HOH HOH . H 4 HOH A 24 324 53 HOH HOH . H 4 HOH A 25 325 79 HOH HOH . H 4 HOH A 26 326 109 HOH HOH . H 4 HOH A 27 327 63 HOH HOH . H 4 HOH A 28 328 17 HOH HOH . H 4 HOH A 29 329 44 HOH HOH . H 4 HOH A 30 330 31 HOH HOH . H 4 HOH A 31 331 11 HOH HOH . H 4 HOH A 32 332 232 HOH HOH . H 4 HOH A 33 333 13 HOH HOH . H 4 HOH A 34 334 85 HOH HOH . H 4 HOH A 35 335 226 HOH HOH . H 4 HOH A 36 336 27 HOH HOH . H 4 HOH A 37 337 30 HOH HOH . H 4 HOH A 38 338 122 HOH HOH . H 4 HOH A 39 339 6 HOH HOH . H 4 HOH A 40 340 113 HOH HOH . H 4 HOH A 41 341 223 HOH HOH . H 4 HOH A 42 342 32 HOH HOH . H 4 HOH A 43 343 20 HOH HOH . H 4 HOH A 44 344 108 HOH HOH . H 4 HOH A 45 345 9 HOH HOH . H 4 HOH A 46 346 244 HOH HOH . H 4 HOH A 47 347 69 HOH HOH . H 4 HOH A 48 348 3 HOH HOH . H 4 HOH A 49 349 123 HOH HOH . H 4 HOH A 50 350 55 HOH HOH . H 4 HOH A 51 351 239 HOH HOH . H 4 HOH A 52 352 173 HOH HOH . H 4 HOH A 53 353 156 HOH HOH . H 4 HOH A 54 354 87 HOH HOH . H 4 HOH A 55 355 110 HOH HOH . H 4 HOH A 56 356 222 HOH HOH . H 4 HOH A 57 357 71 HOH HOH . H 4 HOH A 58 358 207 HOH HOH . H 4 HOH A 59 359 2 HOH HOH . H 4 HOH A 60 360 121 HOH HOH . H 4 HOH A 61 361 157 HOH HOH . H 4 HOH A 62 362 225 HOH HOH . H 4 HOH A 63 363 227 HOH HOH . H 4 HOH A 64 364 21 HOH HOH . H 4 HOH A 65 365 58 HOH HOH . H 4 HOH A 66 366 140 HOH HOH . H 4 HOH A 67 367 158 HOH HOH . H 4 HOH A 68 368 183 HOH HOH . H 4 HOH A 69 369 230 HOH HOH . H 4 HOH A 70 370 96 HOH HOH . H 4 HOH A 71 371 221 HOH HOH . H 4 HOH A 72 372 176 HOH HOH . H 4 HOH A 73 373 241 HOH HOH . H 4 HOH A 74 374 192 HOH HOH . H 4 HOH A 75 375 198 HOH HOH . H 4 HOH A 76 376 160 HOH HOH . H 4 HOH A 77 377 202 HOH HOH . H 4 HOH A 78 378 171 HOH HOH . H 4 HOH A 79 379 117 HOH HOH . H 4 HOH A 80 380 194 HOH HOH . H 4 HOH A 81 381 181 HOH HOH . H 4 HOH A 82 382 234 HOH HOH . H 4 HOH A 83 383 67 HOH HOH . H 4 HOH A 84 384 68 HOH HOH . H 4 HOH A 85 385 216 HOH HOH . H 4 HOH A 86 386 186 HOH HOH . H 4 HOH A 87 387 36 HOH HOH . H 4 HOH A 88 388 119 HOH HOH . H 4 HOH A 89 389 229 HOH HOH . H 4 HOH A 90 390 114 HOH HOH . H 4 HOH A 91 391 209 HOH HOH . H 4 HOH A 92 392 168 HOH HOH . H 4 HOH A 93 393 94 HOH HOH . H 4 HOH A 94 394 72 HOH HOH . H 4 HOH A 95 395 98 HOH HOH . H 4 HOH A 96 396 70 HOH HOH . H 4 HOH A 97 397 220 HOH HOH . H 4 HOH A 98 398 153 HOH HOH . H 4 HOH A 99 399 238 HOH HOH . H 4 HOH A 100 400 190 HOH HOH . H 4 HOH A 101 401 196 HOH HOH . H 4 HOH A 102 402 155 HOH HOH . H 4 HOH A 103 403 99 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.625 _atom_site.Cartn_y -2.516 _atom_site.Cartn_z -22.712 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #