data_7LRD
#
_model_server_result.job_id            liHyARjvdWwm5bpDCC0Q8A 
_model_server_result.datetime_utc      '2024-12-22 05:58:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lrd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":2003}' 
#
_entry.id    7LRD 
#
_exptl.entry_id    7LRD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              305.352 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4~{R})-3-[4-(diethylamino)-3-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]phenyl]-4-methyl-4,5-dihydro-1~{H}-pyridazin-6-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LRD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LRD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 280 A HIS 275 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc2 A SG CYS 282 A CYS 277 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc3 A SG CYS 316 A CYS 311 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc4 A SG CYS 317 A CYS 312 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc5 B OD2 ASP 199 B ASP 837 1_555 F MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc6 B OD1 ASP 199 B ASP 837 1_555 G MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc7 B OD1 ASP 312 B ASP 950 1_555 F MN MN . B MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? 
metalc ? metalc8 C ND1 HIS 280 C HIS 275 1_555 I ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc9 C SG CYS 282 C CYS 277 1_555 I ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc10 C SG CYS 316 C CYS 311 1_555 I ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc11 C SG CYS 317 C CYS 312 1_555 I ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc12 D OD2 ASP 199 D ASP 837 1_555 J MN MN . D MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc13 D OD1 ASP 199 D ASP 837 1_555 K MG MG . D MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc14 D OD1 ASP 312 D ASP 950 1_555 J MN MN . D MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? 
#
_chem_comp.formula           'C15 H21 N4 O3' 
_chem_comp.formula_weight    305.352 
_chem_comp.id                X5M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4~{R})-3-[4-(diethylamino)-3-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]phenyl]-4-methyl-4,5-dihydro-1~{H}-pyridazin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C05 C04 X5M sing 374 n n 
C01 C02 X5M sing 375 n n 
C02 N03 X5M sing 376 n n 
C04 N03 X5M sing 377 n n 
N03 C06 X5M sing 378 n n 
O13 N12 X5M sing 379 n n 
C06 C07 X5M doub 380 n y 
C06 C11 X5M sing 381 n y 
C07 C08 X5M sing 382 n y 
N12 C11 X5M sing 383 n n 
N12 O14 X5M doub 384 n n 
C11 C10 X5M doub 385 n y 
C08 C09 X5M doub 386 n y 
C10 C09 X5M sing 387 n y 
C09 C15 X5M sing 388 n n 
C22 C21 X5M sing 389 n n 
C15 C21 X5M sing 390 n n 
C15 N16 X5M doub 391 n n 
C21 C20 X5M sing 392 n n 
N16 N17 X5M sing 393 n n 
C20 C18 X5M sing 394 n n 
N17 C18 X5M sing 395 n n 
C18 O19 X5M doub 396 n n 
C01 H1 X5M sing 397 n n 
C01 H2 X5M sing 398 n n 
C01 H3 X5M sing 399 n n 
C02 H4 X5M sing 400 n n 
C02 H5 X5M sing 401 n n 
C04 H6 X5M sing 402 n n 
C04 H7 X5M sing 403 n n 
C05 H8 X5M sing 404 n n 
C05 H9 X5M sing 405 n n 
C05 H10 X5M sing 406 n n 
C07 H11 X5M sing 407 n n 
C08 H12 X5M sing 408 n n 
C10 H13 X5M sing 409 n n 
C20 H15 X5M sing 410 n n 
C20 H16 X5M sing 411 n n 
C21 H17 X5M sing 412 n n 
C22 H18 X5M sing 413 n n 
C22 H19 X5M sing 414 n n 
C22 H20 X5M sing 415 n n 
N17 H14 X5M sing 416 n n 
#
_atom_sites.entry_id                     7LRD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 601 580 ZN ZN . 
F 4 MN B 1 2001 2001 MN MN . 
G 5 MG B 1 2002 2002 MG MG . 
H 6 X5M B 1 2003 2003 X5M BRD . 
I 3 ZN C 1 601 580 ZN ZN . 
J 4 MN D 1 2001 2001 MN MN . 
K 5 MG D 1 2002 2002 MG MG . 
L 6 X5M D 1 2003 2003 X5M BRD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 X5M . . . H 6 154.117 169.42 207.437 1 39.8 ? C01 X5M 2003 B 1 
HETATM 2 C C02 X5M . . . H 6 153.933 169.114 205.946 1 39.8 ? C02 X5M 2003 B 1 
HETATM 3 N N03 X5M . . . H 6 152.664 169.758 205.535 1 39.8 ? N03 X5M 2003 B 1 
HETATM 4 C C04 X5M . . . H 6 152.338 171.061 206.146 1 39.8 ? C04 X5M 2003 B 1 
HETATM 5 C C05 X5M . . . H 6 153.007 172.096 205.236 1 39.8 ? C05 X5M 2003 B 1 
HETATM 6 C C06 X5M . . . H 6 151.6 168.916 205.179 1 39.8 ? C06 X5M 2003 B 1 
HETATM 7 C C07 X5M . . . H 6 151.472 167.724 205.889 1 39.8 ? C07 X5M 2003 B 1 
HETATM 8 C C08 X5M . . . H 6 150.446 166.832 205.594 1 39.8 ? C08 X5M 2003 B 1 
HETATM 9 C C09 X5M . . . H 6 149.497 167.09 204.576 1 39.8 ? C09 X5M 2003 B 1 
HETATM 10 C C10 X5M . . . H 6 149.633 168.292 203.86 1 39.8 ? C10 X5M 2003 B 1 
HETATM 11 C C11 X5M . . . H 6 150.665 169.176 204.164 1 39.8 ? C11 X5M 2003 B 1 
HETATM 12 N N12 X5M . . . H 6 150.754 170.381 203.404 1 39.8 ? N12 X5M 2003 B 1 
HETATM 13 O O13 X5M . . . H 6 151.702 170.574 202.662 1 39.8 ? O13 X5M 2003 B 1 
HETATM 14 O O14 X5M . . . H 6 149.877 171.225 203.494 1 39.8 ? O14 X5M 2003 B 1 
HETATM 15 C C15 X5M . . . H 6 148.418 166.15 204.26 1 39.8 ? C15 X5M 2003 B 1 
HETATM 16 N N16 X5M . . . H 6 147.327 166.584 203.731 1 39.8 ? N16 X5M 2003 B 1 
HETATM 17 N N17 X5M . . . H 6 146.288 165.709 203.417 1 39.8 ? N17 X5M 2003 B 1 
HETATM 18 C C18 X5M . . . H 6 146.248 164.409 203.821 1 39.8 ? C18 X5M 2003 B 1 
HETATM 19 O O19 X5M . . . H 6 145.43 163.677 203.316 1 39.8 ? O19 X5M 2003 B 1 
HETATM 20 C C20 X5M . . . H 6 147.236 163.982 204.875 1 39.8 ? C20 X5M 2003 B 1 
HETATM 21 C C21 X5M . . . H 6 148.599 164.645 204.553 1 39.8 ? C21 X5M 2003 B 1 
HETATM 22 C C22 X5M . . . H 6 149.213 163.96 203.307 1 39.8 ? C22 X5M 2003 B 1 
#
_model_server_stats.io_time_ms              85 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           382 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           22 
#