data_7LRV # _model_server_result.job_id WJBqSq0YGaB6cOlSKXGipg _model_server_result.datetime_utc '2024-11-15 19:46:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lrv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7LRV # _exptl.entry_id 7LRV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LRV _cell.length_a 54.91 _cell.length_b 60.72 _cell.length_c 63.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 C CYS 96 1_555 B SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A SG CYS 98 C CYS 98 1_555 C CAB HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? covale ? covale2 A SG CYS 101 C CYS 101 1_555 C CAC HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? covale ? covale3 B SG CYS 98 A CYS 98 1_555 E CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? covale ? covale4 B SG CYS 101 A CYS 101 1_555 E CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc1 A SD MET 7 C MET 7 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 A NE2 HIS 60 C HIS 60 1_555 D NI NI . C NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc3 A NE2 HIS 67 C HIS 67 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc4 A NE2 HIS 71 C HIS 71 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 A NE2 HIS 100 C HIS 100 1_555 D NI NI . C NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc6 A NE2 HIS 102 C HIS 102 1_555 C FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc7 A NE2 HIS 104 C HIS 104 1_555 D NI NI . C NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc8 D NI NI . C NI 202 1_555 B NE2 HIS 67 A HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc9 D NI NI . C NI 202 1_555 B NE2 HIS 71 A HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc10 D NI NI . C NI 202 1_555 H O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc11 B SD MET 7 A MET 7 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc12 B NE2 HIS 60 A HIS 60 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc13 B NE2 HIS 100 A HIS 100 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc14 B NE2 HIS 102 A HIS 102 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc15 B NE2 HIS 104 A HIS 104 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc16 F NI NI . A NI 202 1_555 H O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7LRV _atom_sites.fract_transf_matrix[1][1] 0.018212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC C 1 201 150 HEC HEM . D 3 NI C 1 202 1 NI NI . E 2 HEC A 1 201 150 HEC HEM . F 3 NI A 1 202 2 NI NI . G 4 HOH C 1 301 256 HOH HOH . G 4 HOH C 2 302 37 HOH HOH . G 4 HOH C 3 303 252 HOH HOH . G 4 HOH C 4 304 114 HOH HOH . G 4 HOH C 5 305 246 HOH HOH . G 4 HOH C 6 306 186 HOH HOH . G 4 HOH C 7 307 164 HOH HOH . G 4 HOH C 8 308 61 HOH HOH . G 4 HOH C 9 309 60 HOH HOH . G 4 HOH C 10 310 168 HOH HOH . G 4 HOH C 11 311 232 HOH HOH . G 4 HOH C 12 312 118 HOH HOH . G 4 HOH C 13 313 105 HOH HOH . G 4 HOH C 14 314 23 HOH HOH . G 4 HOH C 15 315 17 HOH HOH . G 4 HOH C 16 316 214 HOH HOH . G 4 HOH C 17 317 102 HOH HOH . G 4 HOH C 18 318 231 HOH HOH . G 4 HOH C 19 319 56 HOH HOH . G 4 HOH C 20 320 40 HOH HOH . G 4 HOH C 21 321 103 HOH HOH . G 4 HOH C 22 322 75 HOH HOH . G 4 HOH C 23 323 54 HOH HOH . G 4 HOH C 24 324 200 HOH HOH . G 4 HOH C 25 325 49 HOH HOH . G 4 HOH C 26 326 221 HOH HOH . G 4 HOH C 27 327 170 HOH HOH . G 4 HOH C 28 328 28 HOH HOH . G 4 HOH C 29 329 11 HOH HOH . G 4 HOH C 30 330 175 HOH HOH . G 4 HOH C 31 331 48 HOH HOH . G 4 HOH C 32 332 64 HOH HOH . G 4 HOH C 33 333 22 HOH HOH . G 4 HOH C 34 334 2 HOH HOH . G 4 HOH C 35 335 133 HOH HOH . G 4 HOH C 36 336 224 HOH HOH . G 4 HOH C 37 337 88 HOH HOH . G 4 HOH C 38 338 47 HOH HOH . G 4 HOH C 39 339 134 HOH HOH . G 4 HOH C 40 340 136 HOH HOH . G 4 HOH C 41 341 112 HOH HOH . G 4 HOH C 42 342 25 HOH HOH . G 4 HOH C 43 343 94 HOH HOH . G 4 HOH C 44 344 100 HOH HOH . G 4 HOH C 45 345 115 HOH HOH . G 4 HOH C 46 346 245 HOH HOH . G 4 HOH C 47 347 38 HOH HOH . G 4 HOH C 48 348 158 HOH HOH . G 4 HOH C 49 349 202 HOH HOH . G 4 HOH C 50 350 90 HOH HOH . G 4 HOH C 51 351 137 HOH HOH . G 4 HOH C 52 352 106 HOH HOH . G 4 HOH C 53 353 148 HOH HOH . G 4 HOH C 54 354 58 HOH HOH . G 4 HOH C 55 355 167 HOH HOH . G 4 HOH C 56 356 4 HOH HOH . G 4 HOH C 57 357 24 HOH HOH . G 4 HOH C 58 358 16 HOH HOH . G 4 HOH C 59 359 213 HOH HOH . G 4 HOH C 60 360 8 HOH HOH . G 4 HOH C 61 361 30 HOH HOH . G 4 HOH C 62 362 84 HOH HOH . G 4 HOH C 63 363 180 HOH HOH . G 4 HOH C 64 364 76 HOH HOH . G 4 HOH C 65 365 53 HOH HOH . G 4 HOH C 66 366 244 HOH HOH . G 4 HOH C 67 367 235 HOH HOH . G 4 HOH C 68 368 132 HOH HOH . G 4 HOH C 69 369 32 HOH HOH . G 4 HOH C 70 370 12 HOH HOH . G 4 HOH C 71 371 173 HOH HOH . G 4 HOH C 72 372 34 HOH HOH . G 4 HOH C 73 373 70 HOH HOH . G 4 HOH C 74 374 121 HOH HOH . G 4 HOH C 75 375 207 HOH HOH . G 4 HOH C 76 376 36 HOH HOH . G 4 HOH C 77 377 119 HOH HOH . G 4 HOH C 78 378 131 HOH HOH . G 4 HOH C 79 379 18 HOH HOH . G 4 HOH C 80 380 46 HOH HOH . G 4 HOH C 81 381 125 HOH HOH . G 4 HOH C 82 382 225 HOH HOH . G 4 HOH C 83 383 35 HOH HOH . G 4 HOH C 84 384 85 HOH HOH . G 4 HOH C 85 385 161 HOH HOH . G 4 HOH C 86 386 113 HOH HOH . G 4 HOH C 87 387 255 HOH HOH . G 4 HOH C 88 388 99 HOH HOH . G 4 HOH C 89 389 63 HOH HOH . G 4 HOH C 90 390 62 HOH HOH . G 4 HOH C 91 391 198 HOH HOH . G 4 HOH C 92 392 238 HOH HOH . G 4 HOH C 93 393 86 HOH HOH . G 4 HOH C 94 394 183 HOH HOH . G 4 HOH C 95 395 120 HOH HOH . G 4 HOH C 96 396 243 HOH HOH . G 4 HOH C 97 397 250 HOH HOH . G 4 HOH C 98 398 212 HOH HOH . G 4 HOH C 99 399 80 HOH HOH . G 4 HOH C 100 400 189 HOH HOH . G 4 HOH C 101 401 241 HOH HOH . G 4 HOH C 102 402 194 HOH HOH . G 4 HOH C 103 403 130 HOH HOH . G 4 HOH C 104 404 69 HOH HOH . G 4 HOH C 105 405 196 HOH HOH . G 4 HOH C 106 406 211 HOH HOH . G 4 HOH C 107 407 57 HOH HOH . G 4 HOH C 108 408 239 HOH HOH . G 4 HOH C 109 409 157 HOH HOH . G 4 HOH C 110 410 116 HOH HOH . G 4 HOH C 111 411 98 HOH HOH . G 4 HOH C 112 412 73 HOH HOH . G 4 HOH C 113 413 234 HOH HOH . G 4 HOH C 114 414 42 HOH HOH . G 4 HOH C 115 415 199 HOH HOH . G 4 HOH C 116 416 142 HOH HOH . G 4 HOH C 117 417 248 HOH HOH . G 4 HOH C 118 418 87 HOH HOH . G 4 HOH C 119 419 104 HOH HOH . G 4 HOH C 120 420 33 HOH HOH . G 4 HOH C 121 421 66 HOH HOH . G 4 HOH C 122 422 127 HOH HOH . G 4 HOH C 123 423 182 HOH HOH . G 4 HOH C 124 424 154 HOH HOH . G 4 HOH C 125 425 184 HOH HOH . G 4 HOH C 126 426 141 HOH HOH . G 4 HOH C 127 427 159 HOH HOH . G 4 HOH C 128 428 96 HOH HOH . G 4 HOH C 129 429 195 HOH HOH . G 4 HOH C 130 430 138 HOH HOH . G 4 HOH C 131 431 229 HOH HOH . G 4 HOH C 132 432 101 HOH HOH . G 4 HOH C 133 433 188 HOH HOH . G 4 HOH C 134 434 193 HOH HOH . G 4 HOH C 135 435 222 HOH HOH . G 4 HOH C 136 436 83 HOH HOH . G 4 HOH C 137 437 52 HOH HOH . G 4 HOH C 138 438 181 HOH HOH . G 4 HOH C 139 439 95 HOH HOH . G 4 HOH C 140 440 230 HOH HOH . G 4 HOH C 141 441 204 HOH HOH . G 4 HOH C 142 442 153 HOH HOH . G 4 HOH C 143 443 227 HOH HOH . G 4 HOH C 144 444 178 HOH HOH . G 4 HOH C 145 445 143 HOH HOH . H 4 HOH A 1 301 135 HOH HOH . H 4 HOH A 2 302 258 HOH HOH . H 4 HOH A 3 303 254 HOH HOH . H 4 HOH A 4 304 206 HOH HOH . H 4 HOH A 5 305 219 HOH HOH . H 4 HOH A 6 306 174 HOH HOH . H 4 HOH A 7 307 169 HOH HOH . H 4 HOH A 8 308 110 HOH HOH . H 4 HOH A 9 309 166 HOH HOH . H 4 HOH A 10 310 242 HOH HOH . H 4 HOH A 11 311 172 HOH HOH . H 4 HOH A 12 312 117 HOH HOH . H 4 HOH A 13 313 233 HOH HOH . H 4 HOH A 14 314 247 HOH HOH . H 4 HOH A 15 315 129 HOH HOH . H 4 HOH A 16 316 43 HOH HOH . H 4 HOH A 17 317 111 HOH HOH . H 4 HOH A 18 318 44 HOH HOH . H 4 HOH A 19 319 223 HOH HOH . H 4 HOH A 20 320 124 HOH HOH . H 4 HOH A 21 321 109 HOH HOH . H 4 HOH A 22 322 201 HOH HOH . H 4 HOH A 23 323 41 HOH HOH . H 4 HOH A 24 324 185 HOH HOH . H 4 HOH A 25 325 19 HOH HOH . H 4 HOH A 26 326 72 HOH HOH . H 4 HOH A 27 327 39 HOH HOH . H 4 HOH A 28 328 82 HOH HOH . H 4 HOH A 29 329 145 HOH HOH . H 4 HOH A 30 330 9 HOH HOH . H 4 HOH A 31 331 147 HOH HOH . H 4 HOH A 32 332 122 HOH HOH . H 4 HOH A 33 333 15 HOH HOH . H 4 HOH A 34 334 97 HOH HOH . H 4 HOH A 35 335 128 HOH HOH . H 4 HOH A 36 336 7 HOH HOH . H 4 HOH A 37 337 81 HOH HOH . H 4 HOH A 38 338 14 HOH HOH . H 4 HOH A 39 339 51 HOH HOH . H 4 HOH A 40 340 20 HOH HOH . H 4 HOH A 41 341 26 HOH HOH . H 4 HOH A 42 342 13 HOH HOH . H 4 HOH A 43 343 187 HOH HOH . H 4 HOH A 44 344 218 HOH HOH . H 4 HOH A 45 345 10 HOH HOH . H 4 HOH A 46 346 89 HOH HOH . H 4 HOH A 47 347 45 HOH HOH . H 4 HOH A 48 348 21 HOH HOH . H 4 HOH A 49 349 228 HOH HOH . H 4 HOH A 50 350 27 HOH HOH . H 4 HOH A 51 351 216 HOH HOH . H 4 HOH A 52 352 71 HOH HOH . H 4 HOH A 53 353 108 HOH HOH . H 4 HOH A 54 354 257 HOH HOH . H 4 HOH A 55 355 93 HOH HOH . H 4 HOH A 56 356 55 HOH HOH . H 4 HOH A 57 357 179 HOH HOH . H 4 HOH A 58 358 65 HOH HOH . H 4 HOH A 59 359 29 HOH HOH . H 4 HOH A 60 360 1 HOH HOH . H 4 HOH A 61 361 78 HOH HOH . H 4 HOH A 62 362 197 HOH HOH . H 4 HOH A 63 363 139 HOH HOH . H 4 HOH A 64 364 50 HOH HOH . H 4 HOH A 65 365 151 HOH HOH . H 4 HOH A 66 366 3 HOH HOH . H 4 HOH A 67 367 79 HOH HOH . H 4 HOH A 68 368 91 HOH HOH . H 4 HOH A 69 369 237 HOH HOH . H 4 HOH A 70 370 162 HOH HOH . H 4 HOH A 71 371 249 HOH HOH . H 4 HOH A 72 372 191 HOH HOH . H 4 HOH A 73 373 176 HOH HOH . H 4 HOH A 74 374 107 HOH HOH . H 4 HOH A 75 375 215 HOH HOH . H 4 HOH A 76 376 208 HOH HOH . H 4 HOH A 77 377 217 HOH HOH . H 4 HOH A 78 378 205 HOH HOH . H 4 HOH A 79 379 123 HOH HOH . H 4 HOH A 80 380 160 HOH HOH . H 4 HOH A 81 381 253 HOH HOH . H 4 HOH A 82 382 156 HOH HOH . H 4 HOH A 83 383 155 HOH HOH . H 4 HOH A 84 384 165 HOH HOH . H 4 HOH A 85 385 140 HOH HOH . H 4 HOH A 86 386 240 HOH HOH . H 4 HOH A 87 387 210 HOH HOH . H 4 HOH A 88 388 67 HOH HOH . H 4 HOH A 89 389 190 HOH HOH . H 4 HOH A 90 390 68 HOH HOH . H 4 HOH A 91 391 171 HOH HOH . H 4 HOH A 92 392 74 HOH HOH . H 4 HOH A 93 393 59 HOH HOH . H 4 HOH A 94 394 92 HOH HOH . H 4 HOH A 95 395 236 HOH HOH . H 4 HOH A 96 396 149 HOH HOH . H 4 HOH A 97 397 203 HOH HOH . H 4 HOH A 98 398 77 HOH HOH . H 4 HOH A 99 399 126 HOH HOH . H 4 HOH A 100 400 226 HOH HOH . H 4 HOH A 101 401 220 HOH HOH . H 4 HOH A 102 402 209 HOH HOH . H 4 HOH A 103 403 192 HOH HOH . H 4 HOH A 104 404 150 HOH HOH . H 4 HOH A 105 405 146 HOH HOH . H 4 HOH A 106 406 152 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 6.032 _atom_site.Cartn_y -2.508 _atom_site.Cartn_z -29.854 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 202 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #