data_7LS3 # _model_server_result.job_id QIBEU8cjTRatD2Wem_rP5A _model_server_result.datetime_utc '2024-10-19 03:48:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ls3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7LS3 # _exptl.entry_id 7LS3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.486 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5-methyl-2-pyridin-4-yl-phenyl)-[4-oxidanyl-4-(phenylmethyl)piperidin-1-yl]methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LS3 _cell.length_a 58.349 _cell.length_b 63.603 _cell.length_c 123.107 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 437 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 C N26 YCJ . A YCJ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? # _chem_comp.formula 'C25 H26 N2 O2' _chem_comp.formula_weight 386.486 _chem_comp.id YCJ _chem_comp.mon_nstd_flag . _chem_comp.name (5-methyl-2-pyridin-4-yl-phenyl)-[4-oxidanyl-4-(phenylmethyl)piperidin-1-yl]methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C18 YCJ doub 458 n n C24 C17 YCJ sing 459 n n C17 C10 YCJ doub 460 n y C17 C7 YCJ sing 461 n y C10 C15 YCJ sing 462 n y C9 C12 YCJ doub 463 n y C9 C14 YCJ sing 464 n y C12 N26 YCJ sing 465 n y C7 C4 YCJ doub 466 n y C15 C18 YCJ sing 467 n n C15 C13 YCJ doub 468 n y C18 N27 YCJ sing 469 n n C4 C13 YCJ sing 470 n y C13 C14 YCJ sing 471 n n C14 C8 YCJ doub 472 n y N26 C11 YCJ doub 473 n y C8 C11 YCJ sing 474 n y C1 C2 YCJ doub 475 n y C1 C3 YCJ sing 476 n y C2 C5 YCJ sing 477 n y N27 C21 YCJ sing 478 n n N27 C22 YCJ sing 479 n n C21 C19 YCJ sing 480 n n C19 C23 YCJ sing 481 n n C3 C6 YCJ doub 482 n y C5 C16 YCJ doub 483 n y C22 C20 YCJ sing 484 n n C6 C16 YCJ sing 485 n y C16 C25 YCJ sing 486 n n C20 C23 YCJ sing 487 n n C23 C25 YCJ sing 488 n n C23 O29 YCJ sing 489 n n C4 H1 YCJ sing 490 n n C5 H2 YCJ sing 491 n n C6 H3 YCJ sing 492 n n C7 H4 YCJ sing 493 n n C8 H5 YCJ sing 494 n n C10 H6 YCJ sing 495 n n C20 H7 YCJ sing 496 n n C20 H8 YCJ sing 497 n n C21 H9 YCJ sing 498 n n C21 H10 YCJ sing 499 n n C22 H11 YCJ sing 500 n n C22 H12 YCJ sing 501 n n C24 H13 YCJ sing 502 n n C24 H14 YCJ sing 503 n n C24 H15 YCJ sing 504 n n C1 H16 YCJ sing 505 n n C2 H17 YCJ sing 506 n n C3 H18 YCJ sing 507 n n C9 H19 YCJ sing 508 n n C11 H20 YCJ sing 509 n n C12 H21 YCJ sing 510 n n C19 H22 YCJ sing 511 n n C19 H23 YCJ sing 512 n n C25 H24 YCJ sing 513 n n C25 H25 YCJ sing 514 n n O29 H26 YCJ sing 515 n n # _atom_sites.entry_id 7LS3 _atom_sites.fract_transf_matrix[1][1] 0.017138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 602 HEM HEM . C 3 YCJ A 1 502 701 YCJ LIG . D 4 HOH A 1 601 107 HOH HOH . D 4 HOH A 2 602 110 HOH HOH . D 4 HOH A 3 603 32 HOH HOH . D 4 HOH A 4 604 59 HOH HOH . D 4 HOH A 5 605 151 HOH HOH . D 4 HOH A 6 606 101 HOH HOH . D 4 HOH A 7 607 94 HOH HOH . D 4 HOH A 8 608 131 HOH HOH . D 4 HOH A 9 609 92 HOH HOH . D 4 HOH A 10 610 64 HOH HOH . D 4 HOH A 11 611 21 HOH HOH . D 4 HOH A 12 612 63 HOH HOH . D 4 HOH A 13 613 81 HOH HOH . D 4 HOH A 14 614 52 HOH HOH . D 4 HOH A 15 615 30 HOH HOH . D 4 HOH A 16 616 120 HOH HOH . D 4 HOH A 17 617 15 HOH HOH . D 4 HOH A 18 618 35 HOH HOH . D 4 HOH A 19 619 186 HOH HOH . D 4 HOH A 20 620 177 HOH HOH . D 4 HOH A 21 621 36 HOH HOH . D 4 HOH A 22 622 157 HOH HOH . D 4 HOH A 23 623 155 HOH HOH . D 4 HOH A 24 624 41 HOH HOH . D 4 HOH A 25 625 28 HOH HOH . D 4 HOH A 26 626 116 HOH HOH . D 4 HOH A 27 627 62 HOH HOH . D 4 HOH A 28 628 24 HOH HOH . D 4 HOH A 29 629 31 HOH HOH . D 4 HOH A 30 630 4 HOH HOH . D 4 HOH A 31 631 105 HOH HOH . D 4 HOH A 32 632 169 HOH HOH . D 4 HOH A 33 633 106 HOH HOH . D 4 HOH A 34 634 71 HOH HOH . D 4 HOH A 35 635 137 HOH HOH . D 4 HOH A 36 636 11 HOH HOH . D 4 HOH A 37 637 33 HOH HOH . D 4 HOH A 38 638 66 HOH HOH . D 4 HOH A 39 639 46 HOH HOH . D 4 HOH A 40 640 7 HOH HOH . D 4 HOH A 41 641 17 HOH HOH . D 4 HOH A 42 642 18 HOH HOH . D 4 HOH A 43 643 76 HOH HOH . D 4 HOH A 44 644 125 HOH HOH . D 4 HOH A 45 645 68 HOH HOH . D 4 HOH A 46 646 51 HOH HOH . D 4 HOH A 47 647 67 HOH HOH . D 4 HOH A 48 648 54 HOH HOH . D 4 HOH A 49 649 78 HOH HOH . D 4 HOH A 50 650 2 HOH HOH . D 4 HOH A 51 651 19 HOH HOH . D 4 HOH A 52 652 73 HOH HOH . D 4 HOH A 53 653 26 HOH HOH . D 4 HOH A 54 654 88 HOH HOH . D 4 HOH A 55 655 34 HOH HOH . D 4 HOH A 56 656 10 HOH HOH . D 4 HOH A 57 657 14 HOH HOH . D 4 HOH A 58 658 1 HOH HOH . D 4 HOH A 59 659 74 HOH HOH . D 4 HOH A 60 660 162 HOH HOH . D 4 HOH A 61 661 40 HOH HOH . D 4 HOH A 62 662 109 HOH HOH . D 4 HOH A 63 663 82 HOH HOH . D 4 HOH A 64 664 47 HOH HOH . D 4 HOH A 65 665 20 HOH HOH . D 4 HOH A 66 666 178 HOH HOH . D 4 HOH A 67 667 93 HOH HOH . D 4 HOH A 68 668 90 HOH HOH . D 4 HOH A 69 669 124 HOH HOH . D 4 HOH A 70 670 56 HOH HOH . D 4 HOH A 71 671 9 HOH HOH . D 4 HOH A 72 672 43 HOH HOH . D 4 HOH A 73 673 12 HOH HOH . D 4 HOH A 74 674 37 HOH HOH . D 4 HOH A 75 675 23 HOH HOH . D 4 HOH A 76 676 180 HOH HOH . D 4 HOH A 77 677 27 HOH HOH . D 4 HOH A 78 678 173 HOH HOH . D 4 HOH A 79 679 108 HOH HOH . D 4 HOH A 80 680 25 HOH HOH . D 4 HOH A 81 681 165 HOH HOH . D 4 HOH A 82 682 5 HOH HOH . D 4 HOH A 83 683 99 HOH HOH . D 4 HOH A 84 684 79 HOH HOH . D 4 HOH A 85 685 3 HOH HOH . D 4 HOH A 86 686 48 HOH HOH . D 4 HOH A 87 687 153 HOH HOH . D 4 HOH A 88 688 123 HOH HOH . D 4 HOH A 89 689 154 HOH HOH . D 4 HOH A 90 690 89 HOH HOH . D 4 HOH A 91 691 113 HOH HOH . D 4 HOH A 92 692 135 HOH HOH . D 4 HOH A 93 693 144 HOH HOH . D 4 HOH A 94 694 163 HOH HOH . D 4 HOH A 95 695 8 HOH HOH . D 4 HOH A 96 696 53 HOH HOH . D 4 HOH A 97 697 70 HOH HOH . D 4 HOH A 98 698 72 HOH HOH . D 4 HOH A 99 699 114 HOH HOH . D 4 HOH A 100 700 6 HOH HOH . D 4 HOH A 101 701 44 HOH HOH . D 4 HOH A 102 702 100 HOH HOH . D 4 HOH A 103 703 164 HOH HOH . D 4 HOH A 104 704 128 HOH HOH . D 4 HOH A 105 705 87 HOH HOH . D 4 HOH A 106 706 69 HOH HOH . D 4 HOH A 107 707 174 HOH HOH . D 4 HOH A 108 708 61 HOH HOH . D 4 HOH A 109 709 50 HOH HOH . D 4 HOH A 110 710 65 HOH HOH . D 4 HOH A 111 711 196 HOH HOH . D 4 HOH A 112 712 85 HOH HOH . D 4 HOH A 113 713 167 HOH HOH . D 4 HOH A 114 714 102 HOH HOH . D 4 HOH A 115 715 84 HOH HOH . D 4 HOH A 116 716 191 HOH HOH . D 4 HOH A 117 717 29 HOH HOH . D 4 HOH A 118 718 182 HOH HOH . D 4 HOH A 119 719 121 HOH HOH . D 4 HOH A 120 720 139 HOH HOH . D 4 HOH A 121 721 83 HOH HOH . D 4 HOH A 122 722 75 HOH HOH . D 4 HOH A 123 723 140 HOH HOH . D 4 HOH A 124 724 129 HOH HOH . D 4 HOH A 125 725 170 HOH HOH . D 4 HOH A 126 726 117 HOH HOH . D 4 HOH A 127 727 80 HOH HOH . D 4 HOH A 128 728 103 HOH HOH . D 4 HOH A 129 729 193 HOH HOH . D 4 HOH A 130 730 91 HOH HOH . D 4 HOH A 131 731 158 HOH HOH . D 4 HOH A 132 732 185 HOH HOH . D 4 HOH A 133 733 189 HOH HOH . D 4 HOH A 134 734 145 HOH HOH . D 4 HOH A 135 735 42 HOH HOH . D 4 HOH A 136 736 55 HOH HOH . D 4 HOH A 137 737 58 HOH HOH . D 4 HOH A 138 738 39 HOH HOH . D 4 HOH A 139 739 160 HOH HOH . D 4 HOH A 140 740 13 HOH HOH . D 4 HOH A 141 741 147 HOH HOH . D 4 HOH A 142 742 136 HOH HOH . D 4 HOH A 143 743 49 HOH HOH . D 4 HOH A 144 744 184 HOH HOH . D 4 HOH A 145 745 161 HOH HOH . D 4 HOH A 146 746 97 HOH HOH . D 4 HOH A 147 747 77 HOH HOH . D 4 HOH A 148 748 132 HOH HOH . D 4 HOH A 149 749 150 HOH HOH . D 4 HOH A 150 750 86 HOH HOH . D 4 HOH A 151 751 98 HOH HOH . D 4 HOH A 152 752 133 HOH HOH . D 4 HOH A 153 753 141 HOH HOH . D 4 HOH A 154 754 118 HOH HOH . D 4 HOH A 155 755 115 HOH HOH . D 4 HOH A 156 756 176 HOH HOH . D 4 HOH A 157 757 156 HOH HOH . D 4 HOH A 158 758 181 HOH HOH . D 4 HOH A 159 759 168 HOH HOH . D 4 HOH A 160 760 57 HOH HOH . D 4 HOH A 161 761 138 HOH HOH . D 4 HOH A 162 762 148 HOH HOH . D 4 HOH A 163 763 38 HOH HOH . D 4 HOH A 164 764 159 HOH HOH . D 4 HOH A 165 765 190 HOH HOH . D 4 HOH A 166 766 149 HOH HOH . D 4 HOH A 167 767 134 HOH HOH . D 4 HOH A 168 768 127 HOH HOH . D 4 HOH A 169 769 104 HOH HOH . D 4 HOH A 170 770 142 HOH HOH . D 4 HOH A 171 771 146 HOH HOH . D 4 HOH A 172 772 126 HOH HOH . D 4 HOH A 173 773 130 HOH HOH . D 4 HOH A 174 774 172 HOH HOH . D 4 HOH A 175 775 192 HOH HOH . D 4 HOH A 176 776 122 HOH HOH . D 4 HOH A 177 777 171 HOH HOH . D 4 HOH A 178 778 188 HOH HOH . D 4 HOH A 179 779 187 HOH HOH . D 4 HOH A 180 780 194 HOH HOH . D 4 HOH A 181 781 152 HOH HOH . D 4 HOH A 182 782 183 HOH HOH . D 4 HOH A 183 783 175 HOH HOH . D 4 HOH A 184 784 179 HOH HOH . D 4 HOH A 185 785 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 YCJ . . . C 3 17.428 -3.785 -22.551 1 18.9 ? C4 YCJ 502 A 1 HETATM 2 C C5 YCJ . . . C 3 19.783 4.718 -20.64 1 24.62 ? C5 YCJ 502 A 1 HETATM 3 C C6 YCJ . . . C 3 21.225 3.052 -19.774 1 25.28 ? C6 YCJ 502 A 1 HETATM 4 C C7 YCJ . . . C 3 18.785 -3.955 -22.767 1 19.81 ? C7 YCJ 502 A 1 HETATM 5 C C8 YCJ . . . C 3 14.735 -3.449 -21.766 1 19.29 ? C8 YCJ 502 A 1 HETATM 6 C C10 YCJ . . . C 3 19.079 -1.606 -22.956 1 19.92 ? C10 YCJ 502 A 1 HETATM 7 C C13 YCJ . . . C 3 16.885 -2.518 -22.511 1 19.58 ? C13 YCJ 502 A 1 HETATM 8 C C15 YCJ . . . C 3 17.737 -1.445 -22.702 1 21.02 ? C15 YCJ 502 A 1 HETATM 9 C C17 YCJ . . . C 3 19.608 -2.869 -22.982 1 19.92 ? C17 YCJ 502 A 1 HETATM 10 C C20 YCJ . . . C 3 18.468 0.843 -19.485 1 23.63 ? C20 YCJ 502 A 1 HETATM 11 C C21 YCJ . . . C 3 16.432 1.809 -21.381 1 23.52 ? C21 YCJ 502 A 1 HETATM 12 C C22 YCJ . . . C 3 17.478 -0.059 -20.191 1 22.61 ? C22 YCJ 502 A 1 HETATM 13 C C24 YCJ . . . C 3 21.066 -3.035 -23.238 1 20.31 ? C24 YCJ 502 A 1 HETATM 14 C C1 YCJ . . . C 3 21.994 4.464 -21.538 1 25.35 ? C1 YCJ 502 A 1 HETATM 15 C C2 YCJ . . . C 3 20.77 5.105 -21.524 1 24.61 ? C2 YCJ 502 A 1 HETATM 16 C C3 YCJ . . . C 3 22.22 3.428 -20.656 1 25.07 ? C3 YCJ 502 A 1 HETATM 17 C C9 YCJ . . . C 3 14.758 -1.377 -22.903 1 18.86 ? C9 YCJ 502 A 1 HETATM 18 C C11 YCJ . . . C 3 13.364 -3.356 -21.701 1 18.63 ? C11 YCJ 502 A 1 HETATM 19 C C12 YCJ . . . C 3 13.388 -1.383 -22.794 1 19.03 ? C12 YCJ 502 A 1 HETATM 20 C C14 YCJ . . . C 3 15.449 -2.435 -22.367 1 19.25 ? C14 YCJ 502 A 1 HETATM 21 C C16 YCJ . . . C 3 19.999 3.677 -19.758 1 24.71 ? C16 YCJ 502 A 1 HETATM 22 C C18 YCJ . . . C 3 17.281 -0.052 -22.689 1 22.63 ? C18 YCJ 502 A 1 HETATM 23 C C19 YCJ . . . C 3 17.33 2.791 -20.665 1 23.58 ? C19 YCJ 502 A 1 HETATM 24 C C23 YCJ . . . C 3 17.922 2.259 -19.37 1 23.89 ? C23 YCJ 502 A 1 HETATM 25 C C25 YCJ . . . C 3 18.934 3.242 -18.792 1 24.08 ? C25 YCJ 502 A 1 HETATM 26 N N26 YCJ . . . C 3 12.667 -2.337 -22.208 1 18.02 ? N26 YCJ 502 A 1 HETATM 27 N N27 YCJ . . . C 3 17.071 0.515 -21.453 1 23.38 ? N27 YCJ 502 A 1 HETATM 28 O O28 YCJ . . . C 3 17.119 0.519 -23.76 1 23.89 ? O28 YCJ 502 A 1 HETATM 29 O O29 YCJ . . . C 3 16.852 2.157 -18.441 1 24.12 ? O29 YCJ 502 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #