data_7LSE # _model_server_result.job_id '_FP1Jwuj4DiXr_x7fWYlOA' _model_server_result.datetime_utc '2024-10-20 13:06:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lse # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7LSE # _exptl.entry_id 7LSE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LSE _cell.length_a 56.96 _cell.length_b 69.72 _cell.length_c 180.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LSE _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf2 A SG CYS 147 H CYS 140 1_555 A SG CYS 203 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf5 C SG CYS 7 E CYS 307 1_555 C SG CYS 38 E CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7LSE _atom_sites.fract_transf_matrix[1][1] 0.017556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL H 1 301 301 GOL GOL . E 5 HOH H 1 401 95 HOH HOH . E 5 HOH H 2 402 18 HOH HOH . E 5 HOH H 3 403 83 HOH HOH . E 5 HOH H 4 404 80 HOH HOH . E 5 HOH H 5 405 166 HOH HOH . E 5 HOH H 6 406 126 HOH HOH . E 5 HOH H 7 407 92 HOH HOH . E 5 HOH H 8 408 188 HOH HOH . E 5 HOH H 9 409 156 HOH HOH . E 5 HOH H 10 410 71 HOH HOH . E 5 HOH H 11 411 101 HOH HOH . E 5 HOH H 12 412 96 HOH HOH . E 5 HOH H 13 413 146 HOH HOH . E 5 HOH H 14 414 62 HOH HOH . E 5 HOH H 15 415 3 HOH HOH . E 5 HOH H 16 416 1 HOH HOH . E 5 HOH H 17 417 9 HOH HOH . E 5 HOH H 18 418 35 HOH HOH . E 5 HOH H 19 419 36 HOH HOH . E 5 HOH H 20 420 171 HOH HOH . E 5 HOH H 21 421 76 HOH HOH . E 5 HOH H 22 422 51 HOH HOH . E 5 HOH H 23 423 195 HOH HOH . E 5 HOH H 24 424 157 HOH HOH . E 5 HOH H 25 425 49 HOH HOH . E 5 HOH H 26 426 117 HOH HOH . E 5 HOH H 27 427 16 HOH HOH . E 5 HOH H 28 428 179 HOH HOH . E 5 HOH H 29 429 91 HOH HOH . E 5 HOH H 30 430 116 HOH HOH . E 5 HOH H 31 431 149 HOH HOH . E 5 HOH H 32 432 73 HOH HOH . E 5 HOH H 33 433 8 HOH HOH . E 5 HOH H 34 434 194 HOH HOH . E 5 HOH H 35 435 31 HOH HOH . E 5 HOH H 36 436 169 HOH HOH . E 5 HOH H 37 437 98 HOH HOH . E 5 HOH H 38 438 136 HOH HOH . E 5 HOH H 39 439 14 HOH HOH . E 5 HOH H 40 440 65 HOH HOH . E 5 HOH H 41 441 134 HOH HOH . E 5 HOH H 42 442 39 HOH HOH . E 5 HOH H 43 443 168 HOH HOH . E 5 HOH H 44 444 38 HOH HOH . E 5 HOH H 45 445 42 HOH HOH . E 5 HOH H 46 446 53 HOH HOH . E 5 HOH H 47 447 197 HOH HOH . E 5 HOH H 48 448 110 HOH HOH . E 5 HOH H 49 449 163 HOH HOH . E 5 HOH H 50 450 94 HOH HOH . E 5 HOH H 51 451 173 HOH HOH . E 5 HOH H 52 452 47 HOH HOH . E 5 HOH H 53 453 202 HOH HOH . E 5 HOH H 54 454 102 HOH HOH . E 5 HOH H 55 455 58 HOH HOH . E 5 HOH H 56 456 141 HOH HOH . E 5 HOH H 57 457 59 HOH HOH . E 5 HOH H 58 458 162 HOH HOH . E 5 HOH H 59 459 142 HOH HOH . E 5 HOH H 60 460 200 HOH HOH . E 5 HOH H 61 461 82 HOH HOH . E 5 HOH H 62 462 104 HOH HOH . E 5 HOH H 63 463 139 HOH HOH . E 5 HOH H 64 464 153 HOH HOH . E 5 HOH H 65 465 23 HOH HOH . E 5 HOH H 66 466 186 HOH HOH . E 5 HOH H 67 467 103 HOH HOH . E 5 HOH H 68 468 7 HOH HOH . E 5 HOH H 69 469 87 HOH HOH . E 5 HOH H 70 470 121 HOH HOH . E 5 HOH H 71 471 145 HOH HOH . E 5 HOH H 72 472 125 HOH HOH . E 5 HOH H 73 473 148 HOH HOH . E 5 HOH H 74 474 89 HOH HOH . E 5 HOH H 75 475 138 HOH HOH . E 5 HOH H 76 476 63 HOH HOH . E 5 HOH H 77 477 85 HOH HOH . E 5 HOH H 78 478 187 HOH HOH . E 5 HOH H 79 479 78 HOH HOH . E 5 HOH H 80 480 201 HOH HOH . E 5 HOH H 81 481 144 HOH HOH . E 5 HOH H 82 482 178 HOH HOH . E 5 HOH H 83 483 137 HOH HOH . E 5 HOH H 84 484 111 HOH HOH . E 5 HOH H 85 485 54 HOH HOH . E 5 HOH H 86 486 151 HOH HOH . E 5 HOH H 87 487 193 HOH HOH . E 5 HOH H 88 488 44 HOH HOH . F 5 HOH L 1 301 43 HOH HOH . F 5 HOH L 2 302 185 HOH HOH . F 5 HOH L 3 303 69 HOH HOH . F 5 HOH L 4 304 84 HOH HOH . F 5 HOH L 5 305 40 HOH HOH . F 5 HOH L 6 306 34 HOH HOH . F 5 HOH L 7 307 170 HOH HOH . F 5 HOH L 8 308 164 HOH HOH . F 5 HOH L 9 309 45 HOH HOH . F 5 HOH L 10 310 150 HOH HOH . F 5 HOH L 11 311 37 HOH HOH . F 5 HOH L 12 312 154 HOH HOH . F 5 HOH L 13 313 174 HOH HOH . F 5 HOH L 14 314 30 HOH HOH . F 5 HOH L 15 315 113 HOH HOH . F 5 HOH L 16 316 6 HOH HOH . F 5 HOH L 17 317 128 HOH HOH . F 5 HOH L 18 318 13 HOH HOH . F 5 HOH L 19 319 4 HOH HOH . F 5 HOH L 20 320 127 HOH HOH . F 5 HOH L 21 321 135 HOH HOH . F 5 HOH L 22 322 140 HOH HOH . F 5 HOH L 23 323 75 HOH HOH . F 5 HOH L 24 324 66 HOH HOH . F 5 HOH L 25 325 122 HOH HOH . F 5 HOH L 26 326 2 HOH HOH . F 5 HOH L 27 327 181 HOH HOH . F 5 HOH L 28 328 133 HOH HOH . F 5 HOH L 29 329 97 HOH HOH . F 5 HOH L 30 330 26 HOH HOH . F 5 HOH L 31 331 19 HOH HOH . F 5 HOH L 32 332 33 HOH HOH . F 5 HOH L 33 333 15 HOH HOH . F 5 HOH L 34 334 46 HOH HOH . F 5 HOH L 35 335 88 HOH HOH . F 5 HOH L 36 336 100 HOH HOH . F 5 HOH L 37 337 192 HOH HOH . F 5 HOH L 38 338 109 HOH HOH . F 5 HOH L 39 339 129 HOH HOH . F 5 HOH L 40 340 198 HOH HOH . F 5 HOH L 41 341 130 HOH HOH . F 5 HOH L 42 342 48 HOH HOH . F 5 HOH L 43 343 172 HOH HOH . F 5 HOH L 44 344 115 HOH HOH . F 5 HOH L 45 345 74 HOH HOH . F 5 HOH L 46 346 165 HOH HOH . F 5 HOH L 47 347 152 HOH HOH . F 5 HOH L 48 348 81 HOH HOH . F 5 HOH L 49 349 177 HOH HOH . F 5 HOH L 50 350 106 HOH HOH . F 5 HOH L 51 351 108 HOH HOH . F 5 HOH L 52 352 29 HOH HOH . F 5 HOH L 53 353 32 HOH HOH . F 5 HOH L 54 354 123 HOH HOH . F 5 HOH L 55 355 131 HOH HOH . F 5 HOH L 56 356 57 HOH HOH . F 5 HOH L 57 357 50 HOH HOH . F 5 HOH L 58 358 132 HOH HOH . F 5 HOH L 59 359 70 HOH HOH . F 5 HOH L 60 360 184 HOH HOH . F 5 HOH L 61 361 199 HOH HOH . F 5 HOH L 62 362 158 HOH HOH . F 5 HOH L 63 363 90 HOH HOH . F 5 HOH L 64 364 161 HOH HOH . F 5 HOH L 65 365 190 HOH HOH . F 5 HOH L 66 366 182 HOH HOH . F 5 HOH L 67 367 77 HOH HOH . F 5 HOH L 68 368 105 HOH HOH . F 5 HOH L 69 369 191 HOH HOH . F 5 HOH L 70 370 176 HOH HOH . F 5 HOH L 71 371 55 HOH HOH . G 5 HOH E 1 501 12 HOH HOH . G 5 HOH E 2 502 183 HOH HOH . G 5 HOH E 3 503 5 HOH HOH . G 5 HOH E 4 504 114 HOH HOH . G 5 HOH E 5 505 11 HOH HOH . G 5 HOH E 6 506 68 HOH HOH . G 5 HOH E 7 507 17 HOH HOH . G 5 HOH E 8 508 67 HOH HOH . G 5 HOH E 9 509 180 HOH HOH . G 5 HOH E 10 510 27 HOH HOH . G 5 HOH E 11 511 124 HOH HOH . G 5 HOH E 12 512 21 HOH HOH . G 5 HOH E 13 513 167 HOH HOH . G 5 HOH E 14 514 20 HOH HOH . G 5 HOH E 15 515 25 HOH HOH . G 5 HOH E 16 516 99 HOH HOH . G 5 HOH E 17 517 61 HOH HOH . G 5 HOH E 18 518 41 HOH HOH . G 5 HOH E 19 519 10 HOH HOH . G 5 HOH E 20 520 24 HOH HOH . G 5 HOH E 21 521 22 HOH HOH . G 5 HOH E 22 522 107 HOH HOH . G 5 HOH E 23 523 60 HOH HOH . G 5 HOH E 24 524 86 HOH HOH . G 5 HOH E 25 525 52 HOH HOH . G 5 HOH E 26 526 93 HOH HOH . G 5 HOH E 27 527 28 HOH HOH . G 5 HOH E 28 528 120 HOH HOH . G 5 HOH E 29 529 56 HOH HOH . G 5 HOH E 30 530 175 HOH HOH . G 5 HOH E 31 531 119 HOH HOH . G 5 HOH E 32 532 118 HOH HOH . G 5 HOH E 33 533 159 HOH HOH . G 5 HOH E 34 534 72 HOH HOH . G 5 HOH E 35 535 147 HOH HOH . G 5 HOH E 36 536 196 HOH HOH . G 5 HOH E 37 537 189 HOH HOH . G 5 HOH E 38 538 143 HOH HOH . G 5 HOH E 39 539 155 HOH HOH . G 5 HOH E 40 540 160 HOH HOH . G 5 HOH E 41 541 79 HOH HOH . G 5 HOH E 42 542 112 HOH HOH . G 5 HOH E 43 543 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -10.368 -36.963 66.028 1 36.6 ? C1 GOL 301 H 1 HETATM 2 O O1 GOL . . . D 4 -11.141 -38.064 66.223 1 36.34 ? O1 GOL 301 H 1 HETATM 3 C C2 GOL . . . D 4 -11.112 -36.166 64.964 1 37.37 ? C2 GOL 301 H 1 HETATM 4 O O2 GOL . . . D 4 -12.102 -35.367 65.531 1 39.51 ? O2 GOL 301 H 1 HETATM 5 C C3 GOL . . . D 4 -10.007 -35.36 64.288 1 34.45 ? C3 GOL 301 H 1 HETATM 6 O O3 GOL . . . D 4 -10.68 -34.477 63.47 1 38.42 ? O3 GOL 301 H 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #