data_7LTB # _model_server_result.job_id sts0BgP6MCSOd4QNnQ4fdg _model_server_result.datetime_utc '2024-11-23 02:35:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ltb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 7LTB # _exptl.entry_id 7LTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LTB _cell.length_a 24.316 _cell.length_b 29.667 _cell.length_c 32.209 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,J 1 1 B,D,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 Z6G _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BGC 1 F 1 BGC A 10 BGC 2 n C Z6G 2 F 2 Z6G A 11 S2B 2 n D BGC 1 J 1 BGC B 10 BGC 2 n D Z6G 2 J 2 Z6G B 11 S2B # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HT0 1 A HT0 2 1_555 A N PHE 2 A PHE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A OH HT0 1 A HT0 2 1_555 A C3 GHP 3 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale3 A C PHE 2 A PHE 3 1_555 A N GHP 3 A GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C GHP 3 A GHP 4 1_555 A N GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C5 GHP 3 A GHP 4 1_555 A OCZ OMY 5 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale6 A O4 GHP 3 A GHP 4 1_555 C C1 BGC . F BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 sing covale ? covale7 A C GHP 4 A GHP 5 1_555 A N OMY 5 A OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C3 GHP 4 A GHP 5 1_555 A CG1 3FG 6 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? covale ? covale9 A C OMY 5 A OMY 6 1_555 A N 3FG 6 A 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 A ODE OMY 5 A OMY 6 1_555 F C1 YBJ . A YBJ 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale11 A OD1 3FG 6 A 3FG 7 1_555 E C1 MAN . A MAN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 sing covale ? covale12 B C HT0 1 B HT0 2 1_555 B N PHE 2 B PHE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 B OH HT0 1 B HT0 2 1_555 B C3 GHP 3 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale14 B C PHE 2 B PHE 3 1_555 B N GHP 3 B GHP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C GHP 3 B GHP 4 1_555 B N GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale16 B C5 GHP 3 B GHP 4 1_555 B OCZ OMY 5 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale17 B O4 GHP 3 B GHP 4 1_555 D C1 BGC . J BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 sing covale ? covale18 B C GHP 4 B GHP 5 1_555 B N OMY 5 B OMY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 B C3 GHP 4 B GHP 5 1_555 B CG1 3FG 6 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale20 B C OMY 5 B OMY 6 1_555 B N 3FG 6 B 3FG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale21 B ODE OMY 5 B OMY 6 1_555 H C1 YBJ . B YBJ 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale22 B OD1 3FG 6 B 3FG 7 1_555 G C1 MAN . B MAN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 sing covale ? covale23 C O2 BGC . F BGC 1 1_555 C C1 Z6G . F Z6G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale24 D O2 BGC . J BGC 1 1_555 D C1 Z6G . J Z6G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 100 n n C1 O1 MAN sing 101 n n C1 O5 MAN sing 102 n n C1 H1 MAN sing 103 n n C2 C3 MAN sing 104 n n C2 O2 MAN sing 105 n n C2 H2 MAN sing 106 n n C3 C4 MAN sing 107 n n C3 O3 MAN sing 108 n n C3 H3 MAN sing 109 n n C4 C5 MAN sing 110 n n C4 O4 MAN sing 111 n n C4 H4 MAN sing 112 n n C5 C6 MAN sing 113 n n C5 O5 MAN sing 114 n n C5 H5 MAN sing 115 n n C6 O6 MAN sing 116 n n C6 H61 MAN sing 117 n n C6 H62 MAN sing 118 n n O1 HO1 MAN sing 119 n n O2 HO2 MAN sing 120 n n O3 HO3 MAN sing 121 n n O4 HO4 MAN sing 122 n n O6 HO6 MAN sing 123 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7LTB _atom_sites.fract_transf_matrix[1][1] 0.041125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.033707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MAN A 1 101 9 MAN MAN . F 4 YBJ A 1 102 8 YBJ CIM . G 3 MAN B 1 101 9 MAN MAN . H 4 YBJ B 1 102 8 YBJ CIM . I 5 FMT B 1 103 1 FMT FMT . J 6 HOH A 1 201 23 HOH HOH . J 6 HOH A 2 202 25 HOH HOH . J 6 HOH A 3 203 7 HOH HOH . J 6 HOH A 4 204 26 HOH HOH . J 6 HOH A 5 205 19 HOH HOH . J 6 HOH A 6 206 21 HOH HOH . J 6 HOH A 7 207 34 HOH HOH . J 6 HOH A 8 208 5 HOH HOH . J 6 HOH A 9 209 30 HOH HOH . J 6 HOH A 10 210 14 HOH HOH . J 6 HOH A 11 211 11 HOH HOH . J 6 HOH A 12 212 24 HOH HOH . J 6 HOH A 13 213 28 HOH HOH . J 6 HOH A 14 214 22 HOH HOH . J 6 HOH A 15 215 37 HOH HOH . J 6 HOH A 16 216 6 HOH HOH . J 6 HOH A 17 217 4 HOH HOH . J 6 HOH A 18 218 20 HOH HOH . J 6 HOH A 19 219 29 HOH HOH . J 6 HOH A 20 220 16 HOH HOH . K 6 HOH B 1 201 32 HOH HOH . K 6 HOH B 2 202 35 HOH HOH . K 6 HOH B 3 203 27 HOH HOH . K 6 HOH B 4 204 39 HOH HOH . K 6 HOH B 5 205 1 HOH HOH . K 6 HOH B 6 206 8 HOH HOH . K 6 HOH B 7 207 13 HOH HOH . K 6 HOH B 8 208 3 HOH HOH . K 6 HOH B 9 209 2 HOH HOH . K 6 HOH B 10 210 33 HOH HOH . K 6 HOH B 11 211 12 HOH HOH . K 6 HOH B 12 212 40 HOH HOH . K 6 HOH B 13 213 15 HOH HOH . K 6 HOH B 14 214 36 HOH HOH . K 6 HOH B 15 215 17 HOH HOH . K 6 HOH B 16 216 38 HOH HOH . K 6 HOH B 17 217 10 HOH HOH . K 6 HOH B 18 218 31 HOH HOH . K 6 HOH B 19 219 18 HOH HOH . K 6 HOH B 20 220 41 HOH HOH . K 6 HOH B 21 221 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . E 3 -4.944 -0.227 -4.644 1 9.75 ? C1 MAN 101 A 1 HETATM 2 C C2 MAN . . . E 3 -4.206 0.025 -3.361 1 11.43 ? C2 MAN 101 A 1 HETATM 3 C C3 MAN . . . E 3 -4.924 -0.719 -2.249 1 12.69 ? C3 MAN 101 A 1 HETATM 4 C C4 MAN . . . E 3 -6.47 -0.408 -2.242 1 12.55 ? C4 MAN 101 A 1 HETATM 5 C C5 MAN . . . E 3 -7.059 -0.567 -3.619 1 11.42 ? C5 MAN 101 A 1 HETATM 6 C C6 MAN . . . E 3 -8.475 -0.08 -3.678 1 12.69 ? C6 MAN 101 A 1 HETATM 7 O O2 MAN . . . E 3 -4.216 1.422 -3.074 1 12.34 ? O2 MAN 101 A 1 HETATM 8 O O3 MAN . . . E 3 -4.35 -0.439 -0.993 1 14.54 ? O3 MAN 101 A 1 HETATM 9 O O4 MAN . . . E 3 -7.152 -1.301 -1.384 1 13.69 ? O4 MAN 101 A 1 HETATM 10 O O5 MAN . . . E 3 -6.278 0.187 -4.549 1 10.08 ? O5 MAN 101 A 1 HETATM 11 O O6 MAN . . . E 3 -8.52 1.267 -3.165 1 13.63 ? O6 MAN 101 A 1 HETATM 12 H H1 MAN . . . E 3 -4.518 0.377 -5.46 1 11.7 ? H1 MAN 101 A 1 HETATM 13 H H2 MAN . . . E 3 -3.166 -0.327 -3.398 1 13.71 ? H2 MAN 101 A 1 HETATM 14 H H3 MAN . . . E 3 -4.815 -1.797 -2.413 1 15.22 ? H3 MAN 101 A 1 HETATM 15 H H4 MAN . . . E 3 -6.575 0.645 -1.93 1 15.06 ? H4 MAN 101 A 1 HETATM 16 H H5 MAN . . . E 3 -7.039 -1.624 -3.916 1 13.7 ? H5 MAN 101 A 1 HETATM 17 H H61 MAN . . . E 3 -8.813 -0.124 -4.725 1 15.22 ? H61 MAN 101 A 1 HETATM 18 H H62 MAN . . . E 3 -9.101 -0.759 -3.081 1 15.22 ? H62 MAN 101 A 1 HETATM 19 H HO2 MAN . . . E 3 -3.786 1.895 -3.794 1 14.8 ? HO2 MAN 101 A 1 HETATM 20 H HO3 MAN . . . E 3 -3.448 -0.795 -1.034 1 17.44 ? HO3 MAN 101 A 1 HETATM 21 H HO4 MAN . . . E 3 -6.963 -0.959 -0.485 1 16.42 ? HO4 MAN 101 A 1 HETATM 22 H HO6 MAN . . . E 3 -9.147 1.761 -3.707 1 16.34 ? HO6 MAN 101 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #