data_7LTJ # _model_server_result.job_id nZDssBMmesVgiwQAvxwqXw _model_server_result.datetime_utc '2024-11-08 17:50:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ltj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7LTJ # _exptl.entry_id 7LTJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 369.203 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[4-(3,4-dichlorophenyl)piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.56 _cell.angle_gamma 90 _cell.entry_id 7LTJ _cell.length_a 55.231 _cell.length_b 81.466 _cell.length_c 88.808 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_857 -x+3,y,-z+2 -1 0 0 0 1 0 0 0 -1 145.401506 0 176.453106 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H14 Cl2 N4 O3' _chem_comp.formula_weight 369.203 _chem_comp.id YD1 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[4-(3,4-dichlorophenyl)piperazin-1-yl]carbonyl-1~{H}-pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C22 YD1 doub 376 n n C22 C24 YD1 sing 377 n n C22 N21 YD1 sing 378 n n C24 C1 YD1 doub 379 n n N21 C19 YD1 sing 380 n n CL15 C14 YD1 sing 381 n n C1 N18 YD1 sing 382 n n C1 C2 YD1 sing 383 n n C19 N18 YD1 sing 384 n n C19 O20 YD1 doub 385 n n C2 O3 YD1 doub 386 n n C2 N4 YD1 sing 387 n n C14 C16 YD1 doub 388 n y C14 C13 YD1 sing 389 n y C16 C10 YD1 sing 390 n y C6 C5 YD1 sing 391 n n C6 N7 YD1 sing 392 n n N4 C5 YD1 sing 393 n n N4 C9 YD1 sing 394 n n C13 CL17 YD1 sing 395 n n C13 C12 YD1 doub 396 n y C8 N7 YD1 sing 397 n n C8 C9 YD1 sing 398 n n C10 N7 YD1 sing 399 n n C10 C11 YD1 doub 400 n y C12 C11 YD1 sing 401 n y C5 H1 YD1 sing 402 n n C5 H2 YD1 sing 403 n n C6 H3 YD1 sing 404 n n C6 H4 YD1 sing 405 n n C8 H5 YD1 sing 406 n n C8 H6 YD1 sing 407 n n C9 H7 YD1 sing 408 n n C9 H8 YD1 sing 409 n n C12 H9 YD1 sing 410 n n C11 H10 YD1 sing 411 n n C16 H11 YD1 sing 412 n n C24 H12 YD1 sing 413 n n N18 H13 YD1 sing 414 n n N21 H14 YD1 sing 415 n n # _atom_sites.entry_id 7LTJ _atom_sites.fract_transf_matrix[1][1] 0.018106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002081 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011334 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YD1 A 1 401 401 YD1 M42 . C 3 HOH A 1 501 13 HOH HOH . C 3 HOH A 2 502 15 HOH HOH . C 3 HOH A 3 503 111 HOH HOH . C 3 HOH A 4 504 51 HOH HOH . C 3 HOH A 5 505 89 HOH HOH . C 3 HOH A 6 506 53 HOH HOH . C 3 HOH A 7 507 65 HOH HOH . C 3 HOH A 8 508 90 HOH HOH . C 3 HOH A 9 509 119 HOH HOH . C 3 HOH A 10 510 64 HOH HOH . C 3 HOH A 11 511 93 HOH HOH . C 3 HOH A 12 512 118 HOH HOH . C 3 HOH A 13 513 121 HOH HOH . C 3 HOH A 14 514 43 HOH HOH . C 3 HOH A 15 515 32 HOH HOH . C 3 HOH A 16 516 24 HOH HOH . C 3 HOH A 17 517 117 HOH HOH . C 3 HOH A 18 518 26 HOH HOH . C 3 HOH A 19 519 76 HOH HOH . C 3 HOH A 20 520 44 HOH HOH . C 3 HOH A 21 521 29 HOH HOH . C 3 HOH A 22 522 71 HOH HOH . C 3 HOH A 23 523 81 HOH HOH . C 3 HOH A 24 524 94 HOH HOH . C 3 HOH A 25 525 97 HOH HOH . C 3 HOH A 26 526 78 HOH HOH . C 3 HOH A 27 527 56 HOH HOH . C 3 HOH A 28 528 104 HOH HOH . C 3 HOH A 29 529 41 HOH HOH . C 3 HOH A 30 530 1 HOH HOH . C 3 HOH A 31 531 92 HOH HOH . C 3 HOH A 32 532 33 HOH HOH . C 3 HOH A 33 533 48 HOH HOH . C 3 HOH A 34 534 9 HOH HOH . C 3 HOH A 35 535 38 HOH HOH . C 3 HOH A 36 536 40 HOH HOH . C 3 HOH A 37 537 6 HOH HOH . C 3 HOH A 38 538 60 HOH HOH . C 3 HOH A 39 539 99 HOH HOH . C 3 HOH A 40 540 67 HOH HOH . C 3 HOH A 41 541 23 HOH HOH . C 3 HOH A 42 542 83 HOH HOH . C 3 HOH A 43 543 18 HOH HOH . C 3 HOH A 44 544 31 HOH HOH . C 3 HOH A 45 545 22 HOH HOH . C 3 HOH A 46 546 95 HOH HOH . C 3 HOH A 47 547 61 HOH HOH . C 3 HOH A 48 548 25 HOH HOH . C 3 HOH A 49 549 87 HOH HOH . C 3 HOH A 50 550 11 HOH HOH . C 3 HOH A 51 551 21 HOH HOH . C 3 HOH A 52 552 112 HOH HOH . C 3 HOH A 53 553 27 HOH HOH . C 3 HOH A 54 554 74 HOH HOH . C 3 HOH A 55 555 3 HOH HOH . C 3 HOH A 56 556 5 HOH HOH . C 3 HOH A 57 557 54 HOH HOH . C 3 HOH A 58 558 4 HOH HOH . C 3 HOH A 59 559 16 HOH HOH . C 3 HOH A 60 560 62 HOH HOH . C 3 HOH A 61 561 35 HOH HOH . C 3 HOH A 62 562 103 HOH HOH . C 3 HOH A 63 563 30 HOH HOH . C 3 HOH A 64 564 96 HOH HOH . C 3 HOH A 65 565 70 HOH HOH . C 3 HOH A 66 566 59 HOH HOH . C 3 HOH A 67 567 45 HOH HOH . C 3 HOH A 68 568 82 HOH HOH . C 3 HOH A 69 569 2 HOH HOH . C 3 HOH A 70 570 10 HOH HOH . C 3 HOH A 71 571 85 HOH HOH . C 3 HOH A 72 572 19 HOH HOH . C 3 HOH A 73 573 109 HOH HOH . C 3 HOH A 74 574 68 HOH HOH . C 3 HOH A 75 575 28 HOH HOH . C 3 HOH A 76 576 105 HOH HOH . C 3 HOH A 77 577 14 HOH HOH . C 3 HOH A 78 578 69 HOH HOH . C 3 HOH A 79 579 7 HOH HOH . C 3 HOH A 80 580 37 HOH HOH . C 3 HOH A 81 581 55 HOH HOH . C 3 HOH A 82 582 101 HOH HOH . C 3 HOH A 83 583 77 HOH HOH . C 3 HOH A 84 584 36 HOH HOH . C 3 HOH A 85 585 17 HOH HOH . C 3 HOH A 86 586 34 HOH HOH . C 3 HOH A 87 587 42 HOH HOH . C 3 HOH A 88 588 39 HOH HOH . C 3 HOH A 89 589 63 HOH HOH . C 3 HOH A 90 590 50 HOH HOH . C 3 HOH A 91 591 88 HOH HOH . C 3 HOH A 92 592 47 HOH HOH . C 3 HOH A 93 593 66 HOH HOH . C 3 HOH A 94 594 79 HOH HOH . C 3 HOH A 95 595 52 HOH HOH . C 3 HOH A 96 596 12 HOH HOH . C 3 HOH A 97 597 123 HOH HOH . C 3 HOH A 98 598 58 HOH HOH . C 3 HOH A 99 599 72 HOH HOH . C 3 HOH A 100 600 122 HOH HOH . C 3 HOH A 101 601 8 HOH HOH . C 3 HOH A 102 602 80 HOH HOH . C 3 HOH A 103 603 49 HOH HOH . C 3 HOH A 104 604 115 HOH HOH . C 3 HOH A 105 605 100 HOH HOH . C 3 HOH A 106 606 75 HOH HOH . C 3 HOH A 107 607 46 HOH HOH . C 3 HOH A 108 608 84 HOH HOH . C 3 HOH A 109 609 98 HOH HOH . C 3 HOH A 110 610 108 HOH HOH . C 3 HOH A 111 611 57 HOH HOH . C 3 HOH A 112 612 114 HOH HOH . C 3 HOH A 113 613 107 HOH HOH . C 3 HOH A 114 614 106 HOH HOH . C 3 HOH A 115 615 20 HOH HOH . C 3 HOH A 116 616 73 HOH HOH . C 3 HOH A 117 617 91 HOH HOH . C 3 HOH A 118 618 124 HOH HOH . C 3 HOH A 119 619 113 HOH HOH . C 3 HOH A 120 620 116 HOH HOH . C 3 HOH A 121 621 110 HOH HOH . C 3 HOH A 122 622 86 HOH HOH . C 3 HOH A 123 623 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YD1 . . . B 2 60.321 -1.623 104.921 1 31.36 ? C1 YD1 401 A 1 HETATM 2 C C2 YD1 . . . B 2 59.823 -0.449 105.71 1 29.53 ? C2 YD1 401 A 1 HETATM 3 C C5 YD1 . . . B 2 57.783 -1.739 106.399 1 29.89 ? C5 YD1 401 A 1 HETATM 4 C C6 YD1 . . . B 2 56.387 -1.364 105.927 1 37.31 ? C6 YD1 401 A 1 HETATM 5 C C8 YD1 . . . B 2 56.732 0.919 106.706 1 31.78 ? C8 YD1 401 A 1 HETATM 6 C C9 YD1 . . . B 2 58.142 0.564 107.151 1 37.26 ? C9 YD1 401 A 1 HETATM 7 C C12 YD1 . . . B 2 52.505 1.1 107.597 1 36.01 ? C12 YD1 401 A 1 HETATM 8 C C14 YD1 . . . B 2 52.284 -0.487 105.813 1 40.91 ? C14 YD1 401 A 1 HETATM 9 C C10 YD1 . . . B 2 54.484 -0.026 106.735 1 34.25 ? C10 YD1 401 A 1 HETATM 10 C C11 YD1 . . . B 2 53.875 0.886 107.621 1 39.73 ? C11 YD1 401 A 1 HETATM 11 C C13 YD1 . . . B 2 51.697 0.42 106.701 1 40.62 ? C13 YD1 401 A 1 HETATM 12 C C16 YD1 . . . B 2 53.655 -0.712 105.826 1 32.17 ? C16 YD1 401 A 1 HETATM 13 C C19 YD1 . . . B 2 61.548 -3.703 105.175 1 42.77 ? C19 YD1 401 A 1 HETATM 14 C C22 YD1 . . . B 2 60.653 -3.012 102.961 1 29.98 ? C22 YD1 401 A 1 HETATM 15 C C24 YD1 . . . B 2 60.119 -1.822 103.599 1 28.34 ? C24 YD1 401 A 1 HETATM 16 N N18 YD1 . . . B 2 61.005 -2.543 105.68 1 31.1 ? N18 YD1 401 A 1 HETATM 17 N N21 YD1 . . . B 2 61.336 -3.872 103.819 1 31.41 ? N21 YD1 401 A 1 HETATM 18 N N4 YD1 . . . B 2 58.659 -0.558 106.367 1 32.88 ? N4 YD1 401 A 1 HETATM 19 N N7 YD1 . . . B 2 55.863 -0.256 106.752 1 33.77 ? N7 YD1 401 A 1 HETATM 20 O O20 YD1 . . . B 2 62.161 -4.502 105.864 1 39.53 ? O20 YD1 401 A 1 HETATM 21 O O23 YD1 . . . B 2 60.535 -3.292 101.772 1 31.88 ? O23 YD1 401 A 1 HETATM 22 O O3 YD1 . . . B 2 60.528 0.573 105.713 1 34.87 ? O3 YD1 401 A 1 HETATM 23 CL CL15 YD1 . . . B 2 51.292 -1.363 104.658 1 43.04 ? CL15 YD1 401 A 1 HETATM 24 CL CL17 YD1 . . . B 2 49.974 0.717 106.701 1 44.19 ? CL17 YD1 401 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #