data_7LUB # _model_server_result.job_id Rd6L7A5YtbrKnXtYNomh6g _model_server_result.datetime_utc '2024-11-24 04:19:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7LUB # _exptl.entry_id 7LUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 169.073 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'D-2-AMINO-3-PHOSPHONO-PROPIONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7LUB _cell.length_a 190.903 _cell.length_b 190.903 _cell.length_c 116.243 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_454 -x+y-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -190.903 0 -58.1215 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C3 H8 N O5 P' _chem_comp.formula_weight 169.073 _chem_comp.id APO _chem_comp.mon_nstd_flag . _chem_comp.name 'D-2-AMINO-3-PHOSPHONO-PROPIONIC ACID' _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 APO sing 13 n n C1 C3 APO sing 14 n n C1 C6 APO sing 15 n n C1 HC1 APO sing 16 n n N2 HN21 APO sing 17 n n N2 HN22 APO sing 18 n n C3 O4 APO doub 19 n n C3 O5 APO sing 20 n n O5 HO5 APO sing 21 n n C6 P7 APO sing 22 n n C6 HC61 APO sing 23 n n C6 HC62 APO sing 24 n n P7 O8 APO sing 25 n n P7 O9 APO sing 26 n n P7 O10 APO doub 27 n n O8 HO8 APO sing 28 n n O9 HO9 APO sing 29 n n # _atom_sites.entry_id 7LUB _atom_sites.fract_transf_matrix[1][1] 0.005238 _atom_sites.fract_transf_matrix[1][2] 0.003024 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006049 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 APO A 1 601 601 APO APO . D 3 GOL A 1 602 701 GOL GOL . E 3 GOL A 1 603 801 GOL GOL . F 3 GOL A 1 604 901 GOL GOL . G 2 APO B 1 601 601 APO APO . H 4 HOH A 1 701 60 HOH HOH . H 4 HOH A 2 702 294 HOH HOH . H 4 HOH A 3 703 182 HOH HOH . H 4 HOH A 4 704 116 HOH HOH . H 4 HOH A 5 705 192 HOH HOH . H 4 HOH A 6 706 107 HOH HOH . H 4 HOH A 7 707 158 HOH HOH . H 4 HOH A 8 708 180 HOH HOH . H 4 HOH A 9 709 218 HOH HOH . H 4 HOH A 10 710 77 HOH HOH . H 4 HOH A 11 711 243 HOH HOH . H 4 HOH A 12 712 48 HOH HOH . H 4 HOH A 13 713 105 HOH HOH . H 4 HOH A 14 714 259 HOH HOH . H 4 HOH A 15 715 37 HOH HOH . H 4 HOH A 16 716 39 HOH HOH . H 4 HOH A 17 717 231 HOH HOH . H 4 HOH A 18 718 65 HOH HOH . H 4 HOH A 19 719 38 HOH HOH . H 4 HOH A 20 720 94 HOH HOH . H 4 HOH A 21 721 223 HOH HOH . H 4 HOH A 22 722 195 HOH HOH . H 4 HOH A 23 723 190 HOH HOH . H 4 HOH A 24 724 130 HOH HOH . H 4 HOH A 25 725 19 HOH HOH . H 4 HOH A 26 726 4 HOH HOH . H 4 HOH A 27 727 281 HOH HOH . H 4 HOH A 28 728 244 HOH HOH . H 4 HOH A 29 729 42 HOH HOH . H 4 HOH A 30 730 20 HOH HOH . H 4 HOH A 31 731 144 HOH HOH . H 4 HOH A 32 732 2 HOH HOH . H 4 HOH A 33 733 256 HOH HOH . H 4 HOH A 34 734 74 HOH HOH . H 4 HOH A 35 735 104 HOH HOH . H 4 HOH A 36 736 8 HOH HOH . H 4 HOH A 37 737 188 HOH HOH . H 4 HOH A 38 738 72 HOH HOH . H 4 HOH A 39 739 167 HOH HOH . H 4 HOH A 40 740 55 HOH HOH . H 4 HOH A 41 741 50 HOH HOH . H 4 HOH A 42 742 219 HOH HOH . H 4 HOH A 43 743 112 HOH HOH . H 4 HOH A 44 744 150 HOH HOH . H 4 HOH A 45 745 40 HOH HOH . H 4 HOH A 46 746 59 HOH HOH . H 4 HOH A 47 747 181 HOH HOH . H 4 HOH A 48 748 92 HOH HOH . H 4 HOH A 49 749 193 HOH HOH . H 4 HOH A 50 750 233 HOH HOH . H 4 HOH A 51 751 169 HOH HOH . H 4 HOH A 52 752 100 HOH HOH . H 4 HOH A 53 753 57 HOH HOH . H 4 HOH A 54 754 258 HOH HOH . H 4 HOH A 55 755 211 HOH HOH . H 4 HOH A 56 756 123 HOH HOH . H 4 HOH A 57 757 246 HOH HOH . H 4 HOH A 58 758 93 HOH HOH . H 4 HOH A 59 759 203 HOH HOH . H 4 HOH A 60 760 197 HOH HOH . H 4 HOH A 61 761 71 HOH HOH . H 4 HOH A 62 762 34 HOH HOH . H 4 HOH A 63 763 12 HOH HOH . H 4 HOH A 64 764 15 HOH HOH . H 4 HOH A 65 765 189 HOH HOH . H 4 HOH A 66 766 199 HOH HOH . H 4 HOH A 67 767 28 HOH HOH . H 4 HOH A 68 768 32 HOH HOH . H 4 HOH A 69 769 267 HOH HOH . H 4 HOH A 70 770 68 HOH HOH . H 4 HOH A 71 771 279 HOH HOH . H 4 HOH A 72 772 120 HOH HOH . H 4 HOH A 73 773 225 HOH HOH . H 4 HOH A 74 774 21 HOH HOH . H 4 HOH A 75 775 88 HOH HOH . H 4 HOH A 76 776 53 HOH HOH . H 4 HOH A 77 777 257 HOH HOH . H 4 HOH A 78 778 138 HOH HOH . H 4 HOH A 79 779 160 HOH HOH . H 4 HOH A 80 780 139 HOH HOH . H 4 HOH A 81 781 22 HOH HOH . H 4 HOH A 82 782 61 HOH HOH . H 4 HOH A 83 783 124 HOH HOH . H 4 HOH A 84 784 110 HOH HOH . H 4 HOH A 85 785 47 HOH HOH . H 4 HOH A 86 786 91 HOH HOH . H 4 HOH A 87 787 33 HOH HOH . H 4 HOH A 88 788 62 HOH HOH . H 4 HOH A 89 789 265 HOH HOH . H 4 HOH A 90 790 280 HOH HOH . H 4 HOH A 91 791 80 HOH HOH . H 4 HOH A 92 792 49 HOH HOH . H 4 HOH A 93 793 204 HOH HOH . H 4 HOH A 94 794 101 HOH HOH . H 4 HOH A 95 795 212 HOH HOH . H 4 HOH A 96 796 208 HOH HOH . H 4 HOH A 97 797 273 HOH HOH . H 4 HOH A 98 798 178 HOH HOH . H 4 HOH A 99 799 226 HOH HOH . H 4 HOH A 100 800 174 HOH HOH . H 4 HOH A 101 801 227 HOH HOH . H 4 HOH A 102 802 161 HOH HOH . H 4 HOH A 103 803 1 HOH HOH . H 4 HOH A 104 804 6 HOH HOH . H 4 HOH A 105 805 206 HOH HOH . H 4 HOH A 106 806 213 HOH HOH . H 4 HOH A 107 807 235 HOH HOH . H 4 HOH A 108 808 149 HOH HOH . H 4 HOH A 109 809 3 HOH HOH . H 4 HOH A 110 810 79 HOH HOH . H 4 HOH A 111 811 17 HOH HOH . H 4 HOH A 112 812 141 HOH HOH . H 4 HOH A 113 813 268 HOH HOH . H 4 HOH A 114 814 252 HOH HOH . H 4 HOH A 115 815 51 HOH HOH . H 4 HOH A 116 816 151 HOH HOH . H 4 HOH A 117 817 95 HOH HOH . H 4 HOH A 118 818 220 HOH HOH . H 4 HOH A 119 819 173 HOH HOH . H 4 HOH A 120 820 152 HOH HOH . H 4 HOH A 121 821 163 HOH HOH . H 4 HOH A 122 822 253 HOH HOH . H 4 HOH A 123 823 69 HOH HOH . H 4 HOH A 124 824 131 HOH HOH . H 4 HOH A 125 825 185 HOH HOH . H 4 HOH A 126 826 239 HOH HOH . H 4 HOH A 127 827 142 HOH HOH . H 4 HOH A 128 828 269 HOH HOH . H 4 HOH A 129 829 177 HOH HOH . H 4 HOH A 130 830 129 HOH HOH . H 4 HOH A 131 831 296 HOH HOH . H 4 HOH A 132 832 196 HOH HOH . H 4 HOH A 133 833 29 HOH HOH . H 4 HOH A 134 834 176 HOH HOH . H 4 HOH A 135 835 200 HOH HOH . H 4 HOH A 136 836 170 HOH HOH . H 4 HOH A 137 837 276 HOH HOH . H 4 HOH A 138 838 263 HOH HOH . H 4 HOH A 139 839 282 HOH HOH . H 4 HOH A 140 840 262 HOH HOH . H 4 HOH A 141 841 111 HOH HOH . H 4 HOH A 142 842 291 HOH HOH . H 4 HOH A 143 843 275 HOH HOH . H 4 HOH A 144 844 289 HOH HOH . H 4 HOH A 145 845 135 HOH HOH . H 4 HOH A 146 846 132 HOH HOH . H 4 HOH A 147 847 136 HOH HOH . H 4 HOH A 148 848 270 HOH HOH . H 4 HOH A 149 849 264 HOH HOH . H 4 HOH A 150 850 260 HOH HOH . H 4 HOH A 151 851 261 HOH HOH . H 4 HOH A 152 852 277 HOH HOH . H 4 HOH A 153 853 148 HOH HOH . H 4 HOH A 154 854 133 HOH HOH . H 4 HOH A 155 855 97 HOH HOH . H 4 HOH A 156 856 285 HOH HOH . H 4 HOH A 157 857 284 HOH HOH . I 4 HOH B 1 701 118 HOH HOH . I 4 HOH B 2 702 245 HOH HOH . I 4 HOH B 3 703 272 HOH HOH . I 4 HOH B 4 704 166 HOH HOH . I 4 HOH B 5 705 26 HOH HOH . I 4 HOH B 6 706 191 HOH HOH . I 4 HOH B 7 707 271 HOH HOH . I 4 HOH B 8 708 58 HOH HOH . I 4 HOH B 9 709 254 HOH HOH . I 4 HOH B 10 710 102 HOH HOH . I 4 HOH B 11 711 73 HOH HOH . I 4 HOH B 12 712 117 HOH HOH . I 4 HOH B 13 713 140 HOH HOH . I 4 HOH B 14 714 186 HOH HOH . I 4 HOH B 15 715 184 HOH HOH . I 4 HOH B 16 716 255 HOH HOH . I 4 HOH B 17 717 214 HOH HOH . I 4 HOH B 18 718 164 HOH HOH . I 4 HOH B 19 719 52 HOH HOH . I 4 HOH B 20 720 187 HOH HOH . I 4 HOH B 21 721 5 HOH HOH . I 4 HOH B 22 722 238 HOH HOH . I 4 HOH B 23 723 207 HOH HOH . I 4 HOH B 24 724 84 HOH HOH . I 4 HOH B 25 725 198 HOH HOH . I 4 HOH B 26 726 179 HOH HOH . I 4 HOH B 27 727 128 HOH HOH . I 4 HOH B 28 728 122 HOH HOH . I 4 HOH B 29 729 248 HOH HOH . I 4 HOH B 30 730 154 HOH HOH . I 4 HOH B 31 731 41 HOH HOH . I 4 HOH B 32 732 96 HOH HOH . I 4 HOH B 33 733 36 HOH HOH . I 4 HOH B 34 734 23 HOH HOH . I 4 HOH B 35 735 10 HOH HOH . I 4 HOH B 36 736 157 HOH HOH . I 4 HOH B 37 737 66 HOH HOH . I 4 HOH B 38 738 234 HOH HOH . I 4 HOH B 39 739 222 HOH HOH . I 4 HOH B 40 740 229 HOH HOH . I 4 HOH B 41 741 251 HOH HOH . I 4 HOH B 42 742 216 HOH HOH . I 4 HOH B 43 743 210 HOH HOH . I 4 HOH B 44 744 168 HOH HOH . I 4 HOH B 45 745 46 HOH HOH . I 4 HOH B 46 746 86 HOH HOH . I 4 HOH B 47 747 221 HOH HOH . I 4 HOH B 48 748 76 HOH HOH . I 4 HOH B 49 749 106 HOH HOH . I 4 HOH B 50 750 194 HOH HOH . I 4 HOH B 51 751 103 HOH HOH . I 4 HOH B 52 752 183 HOH HOH . I 4 HOH B 53 753 241 HOH HOH . I 4 HOH B 54 754 64 HOH HOH . I 4 HOH B 55 755 236 HOH HOH . I 4 HOH B 56 756 78 HOH HOH . I 4 HOH B 57 757 215 HOH HOH . I 4 HOH B 58 758 121 HOH HOH . I 4 HOH B 59 759 18 HOH HOH . I 4 HOH B 60 760 205 HOH HOH . I 4 HOH B 61 761 209 HOH HOH . I 4 HOH B 62 762 54 HOH HOH . I 4 HOH B 63 763 11 HOH HOH . I 4 HOH B 64 764 13 HOH HOH . I 4 HOH B 65 765 114 HOH HOH . I 4 HOH B 66 766 81 HOH HOH . I 4 HOH B 67 767 240 HOH HOH . I 4 HOH B 68 768 83 HOH HOH . I 4 HOH B 69 769 16 HOH HOH . I 4 HOH B 70 770 63 HOH HOH . I 4 HOH B 71 771 25 HOH HOH . I 4 HOH B 72 772 35 HOH HOH . I 4 HOH B 73 773 156 HOH HOH . I 4 HOH B 74 774 232 HOH HOH . I 4 HOH B 75 775 126 HOH HOH . I 4 HOH B 76 776 67 HOH HOH . I 4 HOH B 77 777 242 HOH HOH . I 4 HOH B 78 778 145 HOH HOH . I 4 HOH B 79 779 217 HOH HOH . I 4 HOH B 80 780 75 HOH HOH . I 4 HOH B 81 781 278 HOH HOH . I 4 HOH B 82 782 286 HOH HOH . I 4 HOH B 83 783 155 HOH HOH . I 4 HOH B 84 784 162 HOH HOH . I 4 HOH B 85 785 44 HOH HOH . I 4 HOH B 86 786 143 HOH HOH . I 4 HOH B 87 787 70 HOH HOH . I 4 HOH B 88 788 27 HOH HOH . I 4 HOH B 89 789 98 HOH HOH . I 4 HOH B 90 790 113 HOH HOH . I 4 HOH B 91 791 249 HOH HOH . I 4 HOH B 92 792 175 HOH HOH . I 4 HOH B 93 793 87 HOH HOH . I 4 HOH B 94 794 230 HOH HOH . I 4 HOH B 95 795 202 HOH HOH . I 4 HOH B 96 796 89 HOH HOH . I 4 HOH B 97 797 147 HOH HOH . I 4 HOH B 98 798 250 HOH HOH . I 4 HOH B 99 799 43 HOH HOH . I 4 HOH B 100 800 165 HOH HOH . I 4 HOH B 101 801 85 HOH HOH . I 4 HOH B 102 802 24 HOH HOH . I 4 HOH B 103 803 7 HOH HOH . I 4 HOH B 104 804 115 HOH HOH . I 4 HOH B 105 805 224 HOH HOH . I 4 HOH B 106 806 45 HOH HOH . I 4 HOH B 107 807 31 HOH HOH . I 4 HOH B 108 808 14 HOH HOH . I 4 HOH B 109 809 125 HOH HOH . I 4 HOH B 110 810 56 HOH HOH . I 4 HOH B 111 811 90 HOH HOH . I 4 HOH B 112 812 146 HOH HOH . I 4 HOH B 113 813 153 HOH HOH . I 4 HOH B 114 814 297 HOH HOH . I 4 HOH B 115 815 266 HOH HOH . I 4 HOH B 116 816 9 HOH HOH . I 4 HOH B 117 817 108 HOH HOH . I 4 HOH B 118 818 171 HOH HOH . I 4 HOH B 119 819 137 HOH HOH . I 4 HOH B 120 820 237 HOH HOH . I 4 HOH B 121 821 109 HOH HOH . I 4 HOH B 122 822 228 HOH HOH . I 4 HOH B 123 823 274 HOH HOH . I 4 HOH B 124 824 247 HOH HOH . I 4 HOH B 125 825 99 HOH HOH . I 4 HOH B 126 826 298 HOH HOH . I 4 HOH B 127 827 82 HOH HOH . I 4 HOH B 128 828 159 HOH HOH . I 4 HOH B 129 829 201 HOH HOH . I 4 HOH B 130 830 134 HOH HOH . I 4 HOH B 131 831 293 HOH HOH . I 4 HOH B 132 832 295 HOH HOH . I 4 HOH B 133 833 172 HOH HOH . I 4 HOH B 134 834 30 HOH HOH . I 4 HOH B 135 835 290 HOH HOH . I 4 HOH B 136 836 119 HOH HOH . I 4 HOH B 137 837 288 HOH HOH . I 4 HOH B 138 838 283 HOH HOH . I 4 HOH B 139 839 127 HOH HOH . I 4 HOH B 140 840 287 HOH HOH . I 4 HOH B 141 841 292 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 APO . . . C 2 -120.975 -0.894 -24.718 1 49.34 ? C1 APO 601 A 1 HETATM 2 N N2 APO . . . C 2 -119.828 -1.251 -25.532 1 48.59 ? N2 APO 601 A 1 HETATM 3 C C3 APO . . . C 2 -121.805 0.125 -25.448 1 47.03 ? C3 APO 601 A 1 HETATM 4 O O4 APO . . . C 2 -122.399 -0.193 -26.502 1 43.29 ? O4 APO 601 A 1 HETATM 5 O O5 APO . . . C 2 -121.868 1.263 -24.936 1 44.1 ? O5 APO 601 A 1 HETATM 6 C C6 APO . . . C 2 -121.878 -2.04 -24.256 1 47.37 ? C6 APO 601 A 1 HETATM 7 P P7 APO . . . C 2 -121.046 -3.582 -23.776 1 48.4 ? P7 APO 601 A 1 HETATM 8 O O8 APO . . . C 2 -121.194 -3.843 -22.198 1 48.95 ? O8 APO 601 A 1 HETATM 9 O O9 APO . . . C 2 -119.626 -3.659 -24.213 1 44.97 ? O9 APO 601 A 1 HETATM 10 O O10 APO . . . C 2 -121.886 -4.72 -24.574 1 49.6 ? O10 APO 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #