data_7LVC # _model_server_result.job_id w5yXdILYxLSksQosHZzMQg _model_server_result.datetime_utc '2024-11-24 01:05:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lvc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 7LVC # _exptl.entry_id 7LVC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LVC _cell.length_a 34.297 _cell.length_b 45.552 _cell.length_c 99.035 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LVC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 151 A TYR 151 1_555 A N CSD 152 A CSD 152 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C TYR 151 A TYR 151 1_555 A N CSD 152 A CSD 152 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C CSD 152 A CSD 152 1_555 A N PHE 153 A PHE 153 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C CSD 152 A CSD 152 1_555 A N PHE 153 A PHE 153 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A OD2 ASP 70 A ASP 70 1_555 F MN MN . A MN 205 4_466 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A OD1 ASP 79 A ASP 79 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc3 A OD1 ASP 87 A ASP 87 1_555 F MN MN . A MN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc4 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 203 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc5 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc6 A ND1 HIS 149 A HIS 149 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 A O ARG 159 A ARG 159 1_555 D MN MN . A MN 203 1_655 ? A ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 A O ARG 159 A ARG 159 1_555 D MN MN . A MN 203 1_655 ? B ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc9 C O2X NAP . A NAP 202 1_555 G MN MN . A MN 206 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc10 D MN MN . A MN 203 1_555 I O HOH . A HOH 329 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc11 D MN MN . A MN 203 1_555 I O HOH . A HOH 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc12 D MN MN . A MN 203 1_555 I O HOH . A HOH 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc13 E MN MN . A MN 204 1_555 I O HOH . A HOH 350 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc14 H MN MN . A MN 207 1_555 I O HOH . A HOH 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7LVC _atom_sites.fract_transf_matrix[1][1] 0.029157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOL A 1 201 201 FOL FOL . C 3 NAP A 1 202 202 NAP NAP . D 4 MN A 1 203 1 MN MN . E 4 MN A 1 204 2 MN MN . F 4 MN A 1 205 3 MN MN . G 4 MN A 1 206 4 MN MN . H 4 MN A 1 207 5 MN MN . I 5 HOH A 1 301 78 HOH HOH . I 5 HOH A 2 302 70 HOH HOH . I 5 HOH A 3 303 109 HOH HOH . I 5 HOH A 4 304 79 HOH HOH . I 5 HOH A 5 305 61 HOH HOH . I 5 HOH A 6 306 57 HOH HOH . I 5 HOH A 7 307 67 HOH HOH . I 5 HOH A 8 308 74 HOH HOH . I 5 HOH A 9 309 35 HOH HOH . I 5 HOH A 10 310 77 HOH HOH . I 5 HOH A 11 311 9 HOH HOH . I 5 HOH A 12 312 68 HOH HOH . I 5 HOH A 13 313 8 HOH HOH . I 5 HOH A 14 314 80 HOH HOH . I 5 HOH A 15 315 7 HOH HOH . I 5 HOH A 16 316 16 HOH HOH . I 5 HOH A 17 317 3 HOH HOH . I 5 HOH A 18 318 26 HOH HOH . I 5 HOH A 19 319 58 HOH HOH . I 5 HOH A 20 320 75 HOH HOH . I 5 HOH A 21 321 44 HOH HOH . I 5 HOH A 22 322 32 HOH HOH . I 5 HOH A 23 323 29 HOH HOH . I 5 HOH A 24 324 53 HOH HOH . I 5 HOH A 25 325 82 HOH HOH . I 5 HOH A 26 326 100 HOH HOH . I 5 HOH A 27 327 2 HOH HOH . I 5 HOH A 28 328 45 HOH HOH . I 5 HOH A 29 329 15 HOH HOH . I 5 HOH A 30 330 72 HOH HOH . I 5 HOH A 31 331 56 HOH HOH . I 5 HOH A 32 332 97 HOH HOH . I 5 HOH A 33 333 54 HOH HOH . I 5 HOH A 34 334 71 HOH HOH . I 5 HOH A 35 335 36 HOH HOH . I 5 HOH A 36 336 28 HOH HOH . I 5 HOH A 37 337 98 HOH HOH . I 5 HOH A 38 338 38 HOH HOH . I 5 HOH A 39 339 27 HOH HOH . I 5 HOH A 40 340 5 HOH HOH . I 5 HOH A 41 341 60 HOH HOH . I 5 HOH A 42 342 24 HOH HOH . I 5 HOH A 43 343 39 HOH HOH . I 5 HOH A 44 344 25 HOH HOH . I 5 HOH A 45 345 84 HOH HOH . I 5 HOH A 46 346 47 HOH HOH . I 5 HOH A 47 347 76 HOH HOH . I 5 HOH A 48 348 22 HOH HOH . I 5 HOH A 49 349 88 HOH HOH . I 5 HOH A 50 350 66 HOH HOH . I 5 HOH A 51 351 90 HOH HOH . I 5 HOH A 52 352 101 HOH HOH . I 5 HOH A 53 353 62 HOH HOH . I 5 HOH A 54 354 95 HOH HOH . I 5 HOH A 55 355 20 HOH HOH . I 5 HOH A 56 356 42 HOH HOH . I 5 HOH A 57 357 92 HOH HOH . I 5 HOH A 58 358 64 HOH HOH . I 5 HOH A 59 359 33 HOH HOH . I 5 HOH A 60 360 18 HOH HOH . I 5 HOH A 61 361 50 HOH HOH . I 5 HOH A 62 362 1 HOH HOH . I 5 HOH A 63 363 6 HOH HOH . I 5 HOH A 64 364 105 HOH HOH . I 5 HOH A 65 365 31 HOH HOH . I 5 HOH A 66 366 48 HOH HOH . I 5 HOH A 67 367 108 HOH HOH . I 5 HOH A 68 368 46 HOH HOH . I 5 HOH A 69 369 102 HOH HOH . I 5 HOH A 70 370 43 HOH HOH . I 5 HOH A 71 371 10 HOH HOH . I 5 HOH A 72 372 11 HOH HOH . I 5 HOH A 73 373 59 HOH HOH . I 5 HOH A 74 374 17 HOH HOH . I 5 HOH A 75 375 49 HOH HOH . I 5 HOH A 76 376 41 HOH HOH . I 5 HOH A 77 377 40 HOH HOH . I 5 HOH A 78 378 14 HOH HOH . I 5 HOH A 79 379 89 HOH HOH . I 5 HOH A 80 380 51 HOH HOH . I 5 HOH A 81 381 13 HOH HOH . I 5 HOH A 82 382 52 HOH HOH . I 5 HOH A 83 383 12 HOH HOH . I 5 HOH A 84 384 103 HOH HOH . I 5 HOH A 85 385 19 HOH HOH . I 5 HOH A 86 386 93 HOH HOH . I 5 HOH A 87 387 4 HOH HOH . I 5 HOH A 88 388 30 HOH HOH . I 5 HOH A 89 389 110 HOH HOH . I 5 HOH A 90 390 106 HOH HOH . I 5 HOH A 91 391 99 HOH HOH . I 5 HOH A 92 392 63 HOH HOH . I 5 HOH A 93 393 73 HOH HOH . I 5 HOH A 94 394 65 HOH HOH . I 5 HOH A 95 395 86 HOH HOH . I 5 HOH A 96 396 23 HOH HOH . I 5 HOH A 97 397 21 HOH HOH . I 5 HOH A 98 398 69 HOH HOH . I 5 HOH A 99 399 107 HOH HOH . I 5 HOH A 100 400 81 HOH HOH . I 5 HOH A 101 401 55 HOH HOH . I 5 HOH A 102 402 83 HOH HOH . I 5 HOH A 103 403 96 HOH HOH . I 5 HOH A 104 404 104 HOH HOH . I 5 HOH A 105 405 37 HOH HOH . I 5 HOH A 106 406 91 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 38.701 _atom_site.Cartn_y 32.818 _atom_site.Cartn_z 32.28 _atom_site.occupancy 0.52 _atom_site.B_iso_or_equiv 37.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 797 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #