data_7LVP # _model_server_result.job_id zKiJQglhsi1ZRNP6eY3bAQ _model_server_result.datetime_utc '2024-10-10 21:22:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 7LVP # _exptl.entry_id 7LVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.698 _cell.angle_gamma 90 _cell.entry_id 7LVP _cell.length_a 85.3 _cell.length_b 85.769 _cell.length_c 37.018 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1 0 0 0 1 0 0 0 -1 83.106213 0 74.00349 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 129 n n N H GLY sing 130 n n N H2 GLY sing 131 n n CA C GLY sing 132 n n CA HA2 GLY sing 133 n n CA HA3 GLY sing 134 n n C O GLY doub 135 n n C OXT GLY sing 136 n n OXT HXT GLY sing 137 n n # _atom_sites.entry_id 7LVP _atom_sites.fract_transf_matrix[1][1] 0.011723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000348 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 1 EDO EDO . C 2 EDO A 1 402 2 EDO EDO . D 3 SIN A 1 403 4 SIN SIN . E 4 PO4 A 1 404 6 PO4 PO4 . F 4 PO4 A 1 405 7 PO4 PO4 . G 5 GLY A 1 406 9 GLY GLY . H 2 EDO A 1 407 11 EDO EDO . I 6 HOH A 1 501 7 HOH HOH . I 6 HOH A 2 502 28 HOH HOH . I 6 HOH A 3 503 27 HOH HOH . I 6 HOH A 4 504 39 HOH HOH . I 6 HOH A 5 505 47 HOH HOH . I 6 HOH A 6 506 3 HOH HOH . I 6 HOH A 7 507 20 HOH HOH . I 6 HOH A 8 508 40 HOH HOH . I 6 HOH A 9 509 13 HOH HOH . I 6 HOH A 10 510 26 HOH HOH . I 6 HOH A 11 511 42 HOH HOH . I 6 HOH A 12 512 2 HOH HOH . I 6 HOH A 13 513 49 HOH HOH . I 6 HOH A 14 514 4 HOH HOH . I 6 HOH A 15 515 43 HOH HOH . I 6 HOH A 16 516 44 HOH HOH . I 6 HOH A 17 517 8 HOH HOH . I 6 HOH A 18 518 30 HOH HOH . I 6 HOH A 19 519 6 HOH HOH . I 6 HOH A 20 520 60 HOH HOH . I 6 HOH A 21 521 1 HOH HOH . I 6 HOH A 22 522 36 HOH HOH . I 6 HOH A 23 523 5 HOH HOH . I 6 HOH A 24 524 16 HOH HOH . I 6 HOH A 25 525 52 HOH HOH . I 6 HOH A 26 526 41 HOH HOH . I 6 HOH A 27 527 14 HOH HOH . I 6 HOH A 28 528 9 HOH HOH . I 6 HOH A 29 529 29 HOH HOH . I 6 HOH A 30 530 21 HOH HOH . I 6 HOH A 31 531 57 HOH HOH . I 6 HOH A 32 532 10 HOH HOH . I 6 HOH A 33 533 34 HOH HOH . I 6 HOH A 34 534 35 HOH HOH . I 6 HOH A 35 535 31 HOH HOH . I 6 HOH A 36 536 38 HOH HOH . I 6 HOH A 37 537 12 HOH HOH . I 6 HOH A 38 538 15 HOH HOH . I 6 HOH A 39 539 53 HOH HOH . I 6 HOH A 40 540 11 HOH HOH . I 6 HOH A 41 541 18 HOH HOH . I 6 HOH A 42 542 48 HOH HOH . I 6 HOH A 43 543 51 HOH HOH . I 6 HOH A 44 544 46 HOH HOH . I 6 HOH A 45 545 55 HOH HOH . I 6 HOH A 46 546 58 HOH HOH . I 6 HOH A 47 547 61 HOH HOH . I 6 HOH A 48 548 54 HOH HOH . I 6 HOH A 49 549 23 HOH HOH . I 6 HOH A 50 550 32 HOH HOH . I 6 HOH A 51 551 25 HOH HOH . I 6 HOH A 52 552 45 HOH HOH . I 6 HOH A 53 553 22 HOH HOH . I 6 HOH A 54 554 62 HOH HOH . I 6 HOH A 55 555 24 HOH HOH . I 6 HOH A 56 556 56 HOH HOH . I 6 HOH A 57 557 50 HOH HOH . I 6 HOH A 58 558 17 HOH HOH . I 6 HOH A 59 559 19 HOH HOH . I 6 HOH A 60 560 33 HOH HOH . I 6 HOH A 61 561 59 HOH HOH . I 6 HOH A 62 562 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . G 5 1.183 48.046 22.308 1 59.95 ? N GLY 406 A 1 HETATM 2 C CA GLY . . . G 5 1.766 46.733 22.106 1 48.37 ? CA GLY 406 A 1 HETATM 3 C C GLY . . . G 5 0.96 45.626 22.754 1 57.77 ? C GLY 406 A 1 HETATM 4 O O GLY . . . G 5 0.934 44.492 22.273 1 67.26 ? O GLY 406 A 1 HETATM 5 O OXT GLY . . . G 5 0.308 45.835 23.777 1 68.38 ? OXT GLY 406 A 1 HETATM 6 H H1 GLY . . . G 5 1.759 48.685 22.331 1 72.24 ? H1 GLY 406 A 1 HETATM 7 H H2 GLY . . . G 5 0.24 47.957 22.461 1 72.24 ? H2 GLY 406 A 1 HETATM 8 H H3 GLY . . . G 5 1.332 48.586 21.528 1 72.24 ? H3 GLY 406 A 1 HETATM 9 H HA2 GLY . . . G 5 2.66 46.719 22.483 1 58.34 ? HA2 GLY 406 A 1 HETATM 10 H HA3 GLY . . . G 5 1.822 46.552 21.155 1 58.34 ? HA3 GLY 406 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #