data_7LVQ # _model_server_result.job_id 22i6qQepTS6aUnm5ezjUww _model_server_result.datetime_utc '2025-08-31 21:23:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 7LVQ # _exptl.entry_id 7LVQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 71 A GLU 71 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc2 A OD2 ASP 98 A ASP 98 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc3 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc4 D O1B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc5 C OG SER 104 K SER 489 1_555 H MG MG . K MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc6 C OG SER 218 K SER 603 1_555 H MG MG . K MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc7 H MG MG . K MG 801 1_555 I O1G ANP . K ANP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc8 H MG MG . K MG 801 1_555 I O2G ANP . K ANP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc9 H MG MG . K MG 801 1_555 I O2B ANP . K ANP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 224 n n PG O2G GTP sing 225 n n PG O3G GTP sing 226 n n PG O3B GTP sing 227 n n O2G HOG2 GTP sing 228 n n O3G HOG3 GTP sing 229 n n O3B PB GTP sing 230 n n PB O1B GTP doub 231 n n PB O2B GTP sing 232 n n PB O3A GTP sing 233 n n O2B HOB2 GTP sing 234 n n O3A PA GTP sing 235 n n PA O1A GTP doub 236 n n PA O2A GTP sing 237 n n PA O5' GTP sing 238 n n O2A HOA2 GTP sing 239 n n O5' C5' GTP sing 240 n n C5' C4' GTP sing 241 n n C5' H5' GTP sing 242 n n C5' "H5''" GTP sing 243 n n C4' O4' GTP sing 244 n n C4' C3' GTP sing 245 n n C4' H4' GTP sing 246 n n O4' C1' GTP sing 247 n n C3' O3' GTP sing 248 n n C3' C2' GTP sing 249 n n C3' H3' GTP sing 250 n n O3' HO3' GTP sing 251 n n C2' O2' GTP sing 252 n n C2' C1' GTP sing 253 n n C2' H2' GTP sing 254 n n O2' HO2' GTP sing 255 n n C1' N9 GTP sing 256 n n C1' H1' GTP sing 257 n n N9 C8 GTP sing 258 n y N9 C4 GTP sing 259 n y C8 N7 GTP doub 260 n y C8 H8 GTP sing 261 n n N7 C5 GTP sing 262 n y C5 C6 GTP sing 263 n n C5 C4 GTP doub 264 n y C6 O6 GTP doub 265 n n C6 N1 GTP sing 266 n n N1 C2 GTP sing 267 n n N1 HN1 GTP sing 268 n n C2 N2 GTP sing 269 n n C2 N3 GTP doub 270 n n N2 HN21 GTP sing 271 n n N2 HN22 GTP sing 272 n n N3 C4 GTP sing 273 n n # _atom_sites.entry_id 7LVQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 6 GDP B 1 501 501 GDP GDP . G 7 TA1 B 1 502 502 TA1 TA1 . H 5 MG K 1 801 806 MG MG . I 8 ANP K 1 802 807 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 179.977 181.801 171.79 1 50.73 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . D 4 181.222 182.541 172.16 1 50.73 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . D 4 178.792 182.492 172.348 1 50.73 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . D 4 179.994 180.424 172.345 1 50.73 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . D 4 179.848 181.749 170.213 1 50.73 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . D 4 181.094 181.408 169.308 1 50.73 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . D 4 182.299 182.107 169.83 1 50.73 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . D 4 180.837 181.698 167.869 1 50.73 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . D 4 181.297 179.862 169.502 1 50.73 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . D 4 182.646 179.267 168.95 1 50.73 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . D 4 183.574 179.104 170.099 1 50.73 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . D 4 183.182 180.146 167.868 1 50.73 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . D 4 182.273 177.832 168.405 1 50.73 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . D 4 182.791 176.685 169.002 1 50.73 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . D 4 183.492 175.944 167.896 1 50.73 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . D 4 184.323 176.846 167.252 1 50.73 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . D 4 184.366 174.828 168.374 1 50.73 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . D 4 183.817 173.594 168.004 1 50.73 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . D 4 185.689 175.035 167.707 1 50.73 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . D 4 186.081 173.859 167.054 1 50.73 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . D 4 185.453 176.188 166.779 1 50.73 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . D 4 186.539 177.153 166.761 1 50.73 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . D 4 186.793 178.13 167.643 1 50.73 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . D 4 187.867 178.807 167.222 1 50.73 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . D 4 188.276 178.286 166.072 1 50.73 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . D 4 189.293 178.561 165.211 1 50.73 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . D 4 190.074 179.456 165.416 1 50.73 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . D 4 189.444 177.821 164.097 1 50.73 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . D 4 188.592 176.806 163.845 1 50.73 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . D 4 188.714 176.071 162.768 1 50.73 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . D 4 187.593 176.531 164.697 1 50.73 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . D 4 187.44 177.261 165.783 1 50.73 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #