data_7LW1 # _model_server_result.job_id -SSOscgWYD_UshtbJK1XOA _model_server_result.datetime_utc '2024-11-04 20:08:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lw1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":804}' # _entry.id 7LW1 # _exptl.entry_id 7LW1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 L N N ? 5 P N N ? 5 T N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7LW1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 YG1 A 1 801 1 YG1 NAL . F 3 FBP A 1 802 802 FBP FBP . G 4 F6P A 1 803 323 F6P F6P . H 5 ADP A 1 804 324 ADP ADP . I 2 YG1 D 1 801 1 YG1 NAL . J 3 FBP D 1 802 802 FBP FBP . K 4 F6P D 1 803 323 F6P F6P . L 5 ADP D 1 804 324 ADP ADP . M 2 YG1 E 1 801 1 YG1 NAL . N 3 FBP E 1 802 802 FBP FBP . O 4 F6P E 1 803 323 F6P F6P . P 5 ADP E 1 804 324 ADP ADP . Q 2 YG1 F 1 801 1 YG1 NAL . R 3 FBP F 1 802 802 FBP FBP . S 4 F6P F 1 803 323 F6P F6P . T 5 ADP F 1 804 324 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . P 5 105.658 163.535 179.494 0.5 62.82 ? PB ADP 804 E 1 HETATM 2 O O1B ADP . . . P 5 106.096 163.704 178.072 0.5 62.1 ? O1B ADP 804 E 1 HETATM 3 O O2B ADP . . . P 5 104.615 164.521 179.913 0.5 59.87 ? O2B ADP 804 E 1 HETATM 4 O O3B ADP . . . P 5 106.748 163.332 180.504 0.5 61.63 ? O3B ADP 804 E 1 HETATM 5 P PA ADP . . . P 5 103.611 161.819 180.361 0.5 51.1 ? PA ADP 804 E 1 HETATM 6 O O1A ADP . . . P 5 103.153 160.422 180.114 0.5 50.87 ? O1A ADP 804 E 1 HETATM 7 O O2A ADP . . . P 5 102.639 162.935 180.169 0.5 49.7 ? O2A ADP 804 E 1 HETATM 8 O O3A ADP . . . P 5 104.904 162.128 179.481 0.5 57.01 ? O3A ADP 804 E 1 HETATM 9 O O5' ADP . . . P 5 104.119 161.773 181.842 0.5 34.09 ? O5' ADP 804 E 1 HETATM 10 C C5' ADP . . . P 5 104.63 160.54 182.297 0.5 24.1 ? C5' ADP 804 E 1 HETATM 11 C C4' ADP . . . P 5 104.25 160.35 183.745 0.5 24.37 ? C4' ADP 804 E 1 HETATM 12 O O4' ADP . . . P 5 104.154 161.581 184.467 0.5 29.38 ? O4' ADP 804 E 1 HETATM 13 C C3' ADP . . . P 5 102.876 159.763 183.851 0.5 20.04 ? C3' ADP 804 E 1 HETATM 14 O O3' ADP . . . P 5 102.983 158.359 183.698 0.5 21.64 ? O3' ADP 804 E 1 HETATM 15 C C2' ADP . . . P 5 102.469 160.176 185.239 0.5 23.04 ? C2' ADP 804 E 1 HETATM 16 O O2' ADP . . . P 5 102.989 159.248 186.174 0.5 18.34 ? O2' ADP 804 E 1 HETATM 17 C C1' ADP . . . P 5 103.263 161.408 185.567 0.5 27.9 ? C1' ADP 804 E 1 HETATM 18 N N9 ADP . . . P 5 102.413 162.583 185.853 0.5 29.47 ? N9 ADP 804 E 1 HETATM 19 C C8 ADP . . . P 5 101.941 163.477 184.987 0.5 28.6 ? C8 ADP 804 E 1 HETATM 20 N N7 ADP . . . P 5 101.214 164.424 185.627 0.5 30.64 ? N7 ADP 804 E 1 HETATM 21 C C5 ADP . . . P 5 101.225 164.132 186.923 0.5 29.75 ? C5 ADP 804 E 1 HETATM 22 C C6 ADP . . . P 5 100.656 164.707 188.148 0.5 32.06 ? C6 ADP 804 E 1 HETATM 23 N N6 ADP . . . P 5 99.904 165.831 188.107 0.5 34.19 ? N6 ADP 804 E 1 HETATM 24 N N1 ADP . . . P 5 100.906 164.076 189.311 0.5 31.78 ? N1 ADP 804 E 1 HETATM 25 C C2 ADP . . . P 5 101.648 162.963 189.376 0.5 30.49 ? C2 ADP 804 E 1 HETATM 26 N N3 ADP . . . P 5 102.184 162.399 188.293 0.5 28.05 ? N3 ADP 804 E 1 HETATM 27 C C4 ADP . . . P 5 102.014 162.924 187.066 0.5 28.41 ? C4 ADP 804 E 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #