data_7LW3 # _model_server_result.job_id REbTGQ3uZWm2ArAq0j8XUg _model_server_result.datetime_utc '2025-01-29 00:12:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lw3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 7LW3 # _exptl.entry_id 7LW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7LW3 _cell.length_a 184.073 _cell.length_b 184.073 _cell.length_c 57.128 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 198 A ASN 198 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc2 D MG MG . A MG 702 1_555 J O HOH . A HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc3 D MG MG . A MG 702 1_555 J O HOH . A HOH 838 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 D MG MG . A MG 702 1_555 J O HOH . A HOH 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc5 D MG MG . A MG 702 1_555 J O HOH . A HOH 898 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc6 D MG MG . A MG 702 1_555 J O HOH . A HOH 920 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc7 B SG CYS 74 B CYS 74 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc8 B SG CYS 77 B CYS 77 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc9 B NE2 HIS 83 B HIS 83 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc10 B SG CYS 90 B CYS 90 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc11 B SG CYS 117 B CYS 117 1_555 I ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc12 B SG CYS 120 B CYS 120 1_555 I ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc13 B SG CYS 128 B CYS 128 1_555 I ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc14 B SG CYS 130 B CYS 130 1_555 I ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 311 n n N HN1 SAH sing 312 n n N HN2 SAH sing 313 n n CA CB SAH sing 314 n n CA C SAH sing 315 n n CA HA SAH sing 316 n n CB CG SAH sing 317 n n CB HB1 SAH sing 318 n n CB HB2 SAH sing 319 n n CG SD SAH sing 320 n n CG HG1 SAH sing 321 n n CG HG2 SAH sing 322 n n SD C5' SAH sing 323 n n C O SAH doub 324 n n C OXT SAH sing 325 n n OXT HXT SAH sing 326 n n C5' C4' SAH sing 327 n n C5' "H5'1" SAH sing 328 n n C5' "H5'2" SAH sing 329 n n C4' O4' SAH sing 330 n n C4' C3' SAH sing 331 n n C4' H4' SAH sing 332 n n O4' C1' SAH sing 333 n n C3' O3' SAH sing 334 n n C3' C2' SAH sing 335 n n C3' H3' SAH sing 336 n n O3' HO3' SAH sing 337 n n C2' O2' SAH sing 338 n n C2' C1' SAH sing 339 n n C2' H2' SAH sing 340 n n O2' HO2' SAH sing 341 n n C1' N9 SAH sing 342 n n C1' H1' SAH sing 343 n n N9 C8 SAH sing 344 n y N9 C4 SAH sing 345 n y C8 N7 SAH doub 346 n y C8 H8 SAH sing 347 n n N7 C5 SAH sing 348 n y C5 C6 SAH sing 349 n y C5 C4 SAH doub 350 n y C6 N6 SAH sing 351 n n C6 N1 SAH doub 352 n y N6 HN61 SAH sing 353 n n N6 HN62 SAH sing 354 n n N1 C2 SAH sing 355 n y C2 N3 SAH doub 356 n y C2 H2 SAH sing 357 n n N3 C4 SAH sing 358 n y # _atom_sites.entry_id 7LW3 _atom_sites.fract_transf_matrix[1][1] 0.005433 _atom_sites.fract_transf_matrix[1][2] 0.003137 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MES A 1 701 701 MES MES . D 4 MG A 1 702 1 MG MG . E 5 SAH A 1 703 1 SAH SAH . F 6 YG4 A 1 704 1 YG4 GAM . G 7 EDO B 1 201 201 EDO EDO . H 8 ZN B 1 202 133 ZN ZN . I 8 ZN B 1 203 134 ZN ZN . J 9 HOH A 1 801 109 HOH HOH . J 9 HOH A 2 802 147 HOH HOH . J 9 HOH A 3 803 50 HOH HOH . J 9 HOH A 4 804 82 HOH HOH . J 9 HOH A 5 805 90 HOH HOH . J 9 HOH A 6 806 146 HOH HOH . J 9 HOH A 7 807 69 HOH HOH . J 9 HOH A 8 808 71 HOH HOH . J 9 HOH A 9 809 54 HOH HOH . J 9 HOH A 10 810 59 HOH HOH . J 9 HOH A 11 811 92 HOH HOH . J 9 HOH A 12 812 103 HOH HOH . J 9 HOH A 13 813 96 HOH HOH . J 9 HOH A 14 814 53 HOH HOH . J 9 HOH A 15 815 75 HOH HOH . J 9 HOH A 16 816 62 HOH HOH . J 9 HOH A 17 817 21 HOH HOH . J 9 HOH A 18 818 7 HOH HOH . J 9 HOH A 19 819 48 HOH HOH . J 9 HOH A 20 820 155 HOH HOH . J 9 HOH A 21 821 44 HOH HOH . J 9 HOH A 22 822 10 HOH HOH . J 9 HOH A 23 823 37 HOH HOH . J 9 HOH A 24 824 1 HOH HOH . J 9 HOH A 25 825 128 HOH HOH . J 9 HOH A 26 826 60 HOH HOH . J 9 HOH A 27 827 150 HOH HOH . J 9 HOH A 28 828 77 HOH HOH . J 9 HOH A 29 829 14 HOH HOH . J 9 HOH A 30 830 123 HOH HOH . J 9 HOH A 31 831 31 HOH HOH . J 9 HOH A 32 832 131 HOH HOH . J 9 HOH A 33 833 67 HOH HOH . J 9 HOH A 34 834 18 HOH HOH . J 9 HOH A 35 835 49 HOH HOH . J 9 HOH A 36 836 36 HOH HOH . J 9 HOH A 37 837 63 HOH HOH . J 9 HOH A 38 838 4 HOH HOH . J 9 HOH A 39 839 11 HOH HOH . J 9 HOH A 40 840 8 HOH HOH . J 9 HOH A 41 841 20 HOH HOH . J 9 HOH A 42 842 135 HOH HOH . J 9 HOH A 43 843 5 HOH HOH . J 9 HOH A 44 844 51 HOH HOH . J 9 HOH A 45 845 98 HOH HOH . J 9 HOH A 46 846 23 HOH HOH . J 9 HOH A 47 847 124 HOH HOH . J 9 HOH A 48 848 27 HOH HOH . J 9 HOH A 49 849 61 HOH HOH . J 9 HOH A 50 850 134 HOH HOH . J 9 HOH A 51 851 26 HOH HOH . J 9 HOH A 52 852 15 HOH HOH . J 9 HOH A 53 853 138 HOH HOH . J 9 HOH A 54 854 22 HOH HOH . J 9 HOH A 55 855 28 HOH HOH . J 9 HOH A 56 856 91 HOH HOH . J 9 HOH A 57 857 66 HOH HOH . J 9 HOH A 58 858 95 HOH HOH . J 9 HOH A 59 859 166 HOH HOH . J 9 HOH A 60 860 38 HOH HOH . J 9 HOH A 61 861 149 HOH HOH . J 9 HOH A 62 862 34 HOH HOH . J 9 HOH A 63 863 6 HOH HOH . J 9 HOH A 64 864 99 HOH HOH . J 9 HOH A 65 865 70 HOH HOH . J 9 HOH A 66 866 164 HOH HOH . J 9 HOH A 67 867 116 HOH HOH . J 9 HOH A 68 868 120 HOH HOH . J 9 HOH A 69 869 97 HOH HOH . J 9 HOH A 70 870 79 HOH HOH . J 9 HOH A 71 871 24 HOH HOH . J 9 HOH A 72 872 148 HOH HOH . J 9 HOH A 73 873 125 HOH HOH . J 9 HOH A 74 874 141 HOH HOH . J 9 HOH A 75 875 165 HOH HOH . J 9 HOH A 76 876 168 HOH HOH . J 9 HOH A 77 877 52 HOH HOH . J 9 HOH A 78 878 13 HOH HOH . J 9 HOH A 79 879 32 HOH HOH . J 9 HOH A 80 880 145 HOH HOH . J 9 HOH A 81 881 122 HOH HOH . J 9 HOH A 82 882 170 HOH HOH . J 9 HOH A 83 883 121 HOH HOH . J 9 HOH A 84 884 83 HOH HOH . J 9 HOH A 85 885 159 HOH HOH . J 9 HOH A 86 886 173 HOH HOH . J 9 HOH A 87 887 139 HOH HOH . J 9 HOH A 88 888 169 HOH HOH . J 9 HOH A 89 889 142 HOH HOH . J 9 HOH A 90 890 140 HOH HOH . J 9 HOH A 91 891 33 HOH HOH . J 9 HOH A 92 892 29 HOH HOH . J 9 HOH A 93 893 132 HOH HOH . J 9 HOH A 94 894 84 HOH HOH . J 9 HOH A 95 895 12 HOH HOH . J 9 HOH A 96 896 105 HOH HOH . J 9 HOH A 97 897 2 HOH HOH . J 9 HOH A 98 898 153 HOH HOH . J 9 HOH A 99 899 100 HOH HOH . J 9 HOH A 100 900 137 HOH HOH . J 9 HOH A 101 901 78 HOH HOH . J 9 HOH A 102 902 118 HOH HOH . J 9 HOH A 103 903 85 HOH HOH . J 9 HOH A 104 904 64 HOH HOH . J 9 HOH A 105 905 80 HOH HOH . J 9 HOH A 106 906 158 HOH HOH . J 9 HOH A 107 907 106 HOH HOH . J 9 HOH A 108 908 88 HOH HOH . J 9 HOH A 109 909 129 HOH HOH . J 9 HOH A 110 910 156 HOH HOH . J 9 HOH A 111 911 126 HOH HOH . J 9 HOH A 112 912 102 HOH HOH . J 9 HOH A 113 913 162 HOH HOH . J 9 HOH A 114 914 40 HOH HOH . J 9 HOH A 115 915 167 HOH HOH . J 9 HOH A 116 916 144 HOH HOH . J 9 HOH A 117 917 35 HOH HOH . J 9 HOH A 118 918 171 HOH HOH . J 9 HOH A 119 919 157 HOH HOH . J 9 HOH A 120 920 152 HOH HOH . J 9 HOH A 121 921 163 HOH HOH . J 9 HOH A 122 922 143 HOH HOH . J 9 HOH A 123 923 114 HOH HOH . J 9 HOH A 124 924 111 HOH HOH . J 9 HOH A 125 925 81 HOH HOH . J 9 HOH A 126 926 172 HOH HOH . J 9 HOH A 127 927 133 HOH HOH . J 9 HOH A 128 928 73 HOH HOH . J 9 HOH A 129 929 160 HOH HOH . J 9 HOH A 130 930 89 HOH HOH . J 9 HOH A 131 931 115 HOH HOH . J 9 HOH A 132 932 154 HOH HOH . J 9 HOH A 133 933 57 HOH HOH . K 9 HOH B 1 301 112 HOH HOH . K 9 HOH B 2 302 72 HOH HOH . K 9 HOH B 3 303 41 HOH HOH . K 9 HOH B 4 304 104 HOH HOH . K 9 HOH B 5 305 16 HOH HOH . K 9 HOH B 6 306 86 HOH HOH . K 9 HOH B 7 307 47 HOH HOH . K 9 HOH B 8 308 65 HOH HOH . K 9 HOH B 9 309 19 HOH HOH . K 9 HOH B 10 310 45 HOH HOH . K 9 HOH B 11 311 110 HOH HOH . K 9 HOH B 12 312 107 HOH HOH . K 9 HOH B 13 313 58 HOH HOH . K 9 HOH B 14 314 151 HOH HOH . K 9 HOH B 15 315 42 HOH HOH . K 9 HOH B 16 316 68 HOH HOH . K 9 HOH B 17 317 56 HOH HOH . K 9 HOH B 18 318 17 HOH HOH . K 9 HOH B 19 319 25 HOH HOH . K 9 HOH B 20 320 76 HOH HOH . K 9 HOH B 21 321 130 HOH HOH . K 9 HOH B 22 322 113 HOH HOH . K 9 HOH B 23 323 127 HOH HOH . K 9 HOH B 24 324 108 HOH HOH . K 9 HOH B 25 325 161 HOH HOH . K 9 HOH B 26 326 136 HOH HOH . K 9 HOH B 27 327 87 HOH HOH . K 9 HOH B 28 328 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 5 96.745 -20.553 28.456 1 87.17 ? N SAH 703 A 1 HETATM 2 C CA SAH . . . E 5 95.299 -20.819 28.422 1 70.18 ? CA SAH 703 A 1 HETATM 3 C CB SAH . . . E 5 94.574 -19.853 29.37 1 75.29 ? CB SAH 703 A 1 HETATM 4 C CG SAH . . . E 5 95.133 -19.948 30.785 1 89.6 ? CG SAH 703 A 1 HETATM 5 S SD SAH . . . E 5 94.681 -18.596 31.908 1 136.17 ? SD SAH 703 A 1 HETATM 6 C C SAH . . . E 5 94.729 -20.725 26.997 1 82.31 ? C SAH 703 A 1 HETATM 7 O O SAH . . . E 5 93.631 -20.27 26.766 1 95.78 ? O SAH 703 A 1 HETATM 8 O OXT SAH . . . E 5 95.539 -21.196 26.074 1 73.54 ? OXT SAH 703 A 1 HETATM 9 C C5' SAH . . . E 5 92.895 -18.446 31.675 1 74.59 ? C5' SAH 703 A 1 HETATM 10 C C4' SAH . . . E 5 92.716 -17.018 31.195 1 83.29 ? C4' SAH 703 A 1 HETATM 11 O O4' SAH . . . E 5 91.42 -16.511 31.57 1 83.44 ? O4' SAH 703 A 1 HETATM 12 C C3' SAH . . . E 5 93.741 -16.053 31.813 1 85.56 ? C3' SAH 703 A 1 HETATM 13 O O3' SAH . . . E 5 94.788 -15.717 30.897 1 64.13 ? O3' SAH 703 A 1 HETATM 14 C C2' SAH . . . E 5 92.893 -14.834 32.241 1 86.68 ? C2' SAH 703 A 1 HETATM 15 O O2' SAH . . . E 5 93.488 -13.612 31.814 1 81.66 ? O2' SAH 703 A 1 HETATM 16 C C1' SAH . . . E 5 91.537 -15.107 31.574 1 87.14 ? C1' SAH 703 A 1 HETATM 17 N N9 SAH . . . E 5 90.381 -14.548 32.255 1 89.71 ? N9 SAH 703 A 1 HETATM 18 C C8 SAH . . . E 5 89.925 -14.854 33.518 1 76.59 ? C8 SAH 703 A 1 HETATM 19 N N7 SAH . . . E 5 88.911 -14.144 33.927 1 81.52 ? N7 SAH 703 A 1 HETATM 20 C C5 SAH . . . E 5 88.654 -13.298 32.862 1 88.37 ? C5 SAH 703 A 1 HETATM 21 C C6 SAH . . . E 5 87.705 -12.263 32.664 1 93.01 ? C6 SAH 703 A 1 HETATM 22 N N6 SAH . . . E 5 86.834 -11.861 33.604 1 79.89 ? N6 SAH 703 A 1 HETATM 23 N N1 SAH . . . E 5 87.707 -11.622 31.474 1 77.38 ? N1 SAH 703 A 1 HETATM 24 C C2 SAH . . . E 5 88.603 -11.986 30.547 1 78.81 ? C2 SAH 703 A 1 HETATM 25 N N3 SAH . . . E 5 89.557 -12.926 30.619 1 79.13 ? N3 SAH 703 A 1 HETATM 26 C C4 SAH . . . E 5 89.53 -13.539 31.814 1 96.73 ? C4 SAH 703 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #