data_7LW6 # _model_server_result.job_id P7bGSVAcSrYj1cG9NLVW0w _model_server_result.datetime_utc '2024-11-16 04:41:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7LW6 # _exptl.entry_id 7LW6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.416 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LW6 _cell.length_a 89.515 _cell.length_b 89.515 _cell.length_c 133.802 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 89.515 89.515 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 89.515 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 89.515 0 5 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 89.515 0 0 6 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 89.515 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 89.515 89.515 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc5 A OE1 GLU 120 A GLU 119 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc7 B OAG RLT . A RLT 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc8 B OAH RLT . A RLT 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? metalc ? metalc9 B OAE RLT . A RLT 201 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? # _chem_comp.formula 'C20 H21 F N6 O5' _chem_comp.formula_weight 444.416 _chem_comp.id RLT _chem_comp.mon_nstd_flag . _chem_comp.name 'N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RALTEGRAVIR, MK0518' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAW RLT sing 386 n n CAB NBE RLT sing 387 n n CAC CBF RLT sing 388 n n CAD CBF RLT sing 389 n n OAE CAU RLT doub 390 n n OAF CAV RLT doub 391 n n OAG CBD RLT doub 392 n n OAH CAZ RLT sing 393 n n FAI CAX RLT sing 394 n n CAJ CAL RLT doub 395 n y CAJ CAX RLT sing 396 n y CAK CAM RLT sing 397 n y CAK CAX RLT doub 398 n y CAL CAY RLT sing 399 n y CAM CAY RLT doub 400 n y CAN NAR RLT sing 401 n n CAN CAY RLT sing 402 n n NAO NAP RLT sing 403 n y NAO CAW RLT doub 404 n y NAP CBA RLT doub 405 n y NAQ CBB RLT sing 406 n n NAQ CBC RLT doub 407 n n NAR CAU RLT sing 408 n n NAS CAV RLT sing 409 n n NAS CBF RLT sing 410 n n OAT CAW RLT sing 411 n y OAT CBA RLT sing 412 n y CAU CBB RLT sing 413 n n CAV CBA RLT sing 414 n n CAZ CBB RLT doub 415 n n CAZ CBD RLT sing 416 n n CBC NBE RLT sing 417 n n CBC CBF RLT sing 418 n n CBD NBE RLT sing 419 n n CAA HAA RLT sing 420 n n CAA HAAA RLT sing 421 n n CAA HAAB RLT sing 422 n n CAB HAB RLT sing 423 n n CAB HABA RLT sing 424 n n CAB HABB RLT sing 425 n n CAC HAC RLT sing 426 n n CAC HACA RLT sing 427 n n CAC HACB RLT sing 428 n n CAD HAD RLT sing 429 n n CAD HADA RLT sing 430 n n CAD HADB RLT sing 431 n n OAH HOAH RLT sing 432 n n CAJ HAJ RLT sing 433 n n CAK HAK RLT sing 434 n n CAL HAL RLT sing 435 n n CAM HAM RLT sing 436 n n CAN HAN RLT sing 437 n n CAN HANA RLT sing 438 n n NAR HNAR RLT sing 439 n n NAS HNAS RLT sing 440 n n # _atom_sites.entry_id 7LW6 _atom_sites.fract_transf_matrix[1][1] 0.011171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RLT A 1 201 239 RLT RLT . C 3 QQ4 A 1 202 439 QQ4 PVP . D 4 MN A 1 203 1 MN MN . E 4 MN A 1 204 2 MN MN . F 5 SO4 A 1 205 1 SO4 SO4 . G 6 HOH A 1 301 1 HOH HOH . G 6 HOH A 2 302 19 HOH HOH . G 6 HOH A 3 303 5 HOH HOH . G 6 HOH A 4 304 2 HOH HOH . G 6 HOH A 5 305 3 HOH HOH . G 6 HOH A 6 306 6 HOH HOH . G 6 HOH A 7 307 14 HOH HOH . G 6 HOH A 8 308 11 HOH HOH . G 6 HOH A 9 309 15 HOH HOH . G 6 HOH A 10 310 9 HOH HOH . G 6 HOH A 11 311 7 HOH HOH . G 6 HOH A 12 312 13 HOH HOH . G 6 HOH A 13 313 8 HOH HOH . G 6 HOH A 14 314 16 HOH HOH . G 6 HOH A 15 315 17 HOH HOH . G 6 HOH A 16 316 18 HOH HOH . G 6 HOH A 17 317 4 HOH HOH . G 6 HOH A 18 318 10 HOH HOH . G 6 HOH A 19 319 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA RLT . . . B 2 47.462 9.88 17.378 1 116.15 ? CAA RLT 201 A 1 HETATM 2 C CAB RLT . . . B 2 38.056 13.156 17.24 1 118.36 ? CAB RLT 201 A 1 HETATM 3 C CAC RLT . . . B 2 39.386 10.441 16.113 1 129.55 ? CAC RLT 201 A 1 HETATM 4 C CAD RLT . . . B 2 40.255 11.783 14.184 1 146.55 ? CAD RLT 201 A 1 HETATM 5 O OAE RLT . . . B 2 43.657 16.358 17.798 1 118.82 ? OAE RLT 201 A 1 HETATM 6 O OAF RLT . . . B 2 41.979 10.699 18.055 1 147.69 ? OAF RLT 201 A 1 HETATM 7 O OAG RLT . . . B 2 38.712 15.262 18.425 1 110.38 ? OAG RLT 201 A 1 HETATM 8 O OAH RLT . . . B 2 41.082 16.452 18.652 1 110.55 ? OAH RLT 201 A 1 HETATM 9 N NAO RLT . . . B 2 45.509 8.457 16.723 1 169.29 ? NAO RLT 201 A 1 HETATM 10 N NAP RLT . . . B 2 44.104 8.593 16.6 1 168.22 ? NAP RLT 201 A 1 HETATM 11 N NAQ RLT . . . B 2 41.726 13.447 16.604 1 140.06 ? NAQ RLT 201 A 1 HETATM 12 N NAR RLT . . . B 2 44.302 14.393 16.85 1 125.53 ? NAR RLT 201 A 1 HETATM 13 N NAS RLT . . . B 2 41.764 10.753 15.801 1 147.95 ? NAS RLT 201 A 1 HETATM 14 O OAT RLT . . . B 2 44.973 10.528 17.275 1 147.69 ? OAT RLT 201 A 1 HETATM 15 C CAU RLT . . . B 2 43.371 15.213 17.343 1 126.37 ? CAU RLT 201 A 1 HETATM 16 C CAV RLT . . . B 2 42.451 10.473 16.939 1 151.29 ? CAV RLT 201 A 1 HETATM 17 C CAW RLT . . . B 2 46.016 9.58 17.113 1 153.87 ? CAW RLT 201 A 1 HETATM 18 C CAZ RLT . . . B 2 40.951 15.294 17.943 1 115.65 ? CAZ RLT 201 A 1 HETATM 19 C CBA RLT . . . B 2 43.831 9.829 16.889 1 158.24 ? CBA RLT 201 A 1 HETATM 20 C CBB RLT . . . B 2 41.953 14.628 17.296 1 128.8 ? CBB RLT 201 A 1 HETATM 21 C CBC RLT . . . B 2 40.547 12.851 16.516 1 140.35 ? CBC RLT 201 A 1 HETATM 22 C CBD RLT . . . B 2 39.674 14.731 17.878 1 121.62 ? CBD RLT 201 A 1 HETATM 23 N NBE RLT . . . B 2 39.484 13.528 17.169 1 130.18 ? NBE RLT 201 A 1 HETATM 24 C CBF RLT . . . B 2 40.446 11.453 15.666 1 135.23 ? CBF RLT 201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 24 #