data_7LWA # _model_server_result.job_id qLyn4dVqpQu49WkAezAKRQ _model_server_result.datetime_utc '2025-02-20 15:03:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lwa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7LWA # _exptl.entry_id 7LWA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LWA _cell.length_a 50.512 _cell.length_b 84.722 _cell.length_c 95.034 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LWA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 65 A CYS 92 1_555 C FE3 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A OD1 ASP 155 A ASP 182 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc3 A OD2 ASP 155 A ASP 182 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 A OE1 GLU 169 A GLU 196 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 A OE2 GLU 169 A GLU 196 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc6 A SG CYS 316 A CYS 343 1_555 C FE2 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc7 A SG CYS 319 A CYS 346 1_555 C FE1 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc8 A SG CYS 325 A CYS 352 1_555 C FE4 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc9 E MG MG . A MG 403 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc10 E MG MG . A MG 403 1_555 B O3' DT 2 B DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc11 E MG MG . A MG 403 1_555 B OP1 DT 3 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc12 E MG MG . A MG 403 1_555 G O HOH . B HOH 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 120 n n C1 C2 EDO sing 121 n n C1 H11 EDO sing 122 n n C1 H12 EDO sing 123 n n O1 HO1 EDO sing 124 n n C2 O2 EDO sing 125 n n C2 H21 EDO sing 126 n n C2 H22 EDO sing 127 n n O2 HO2 EDO sing 128 n n # _atom_sites.entry_id 7LWA _atom_sites.fract_transf_matrix[1][1] 0.019797 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SF4 A 1 401 502 SF4 SF4 . D 4 EDO A 1 402 503 EDO EDO . E 5 MG A 1 403 504 MG MG . F 6 HOH A 1 501 528 HOH HOH . F 6 HOH A 2 502 506 HOH HOH . F 6 HOH A 3 503 507 HOH HOH . F 6 HOH A 4 504 523 HOH HOH . F 6 HOH A 5 505 513 HOH HOH . F 6 HOH A 6 506 521 HOH HOH . F 6 HOH A 7 507 508 HOH HOH . F 6 HOH A 8 508 511 HOH HOH . F 6 HOH A 9 509 516 HOH HOH . F 6 HOH A 10 510 524 HOH HOH . F 6 HOH A 11 511 525 HOH HOH . F 6 HOH A 12 512 515 HOH HOH . F 6 HOH A 13 513 517 HOH HOH . F 6 HOH A 14 514 522 HOH HOH . F 6 HOH A 15 515 514 HOH HOH . F 6 HOH A 16 516 510 HOH HOH . F 6 HOH A 17 517 519 HOH HOH . F 6 HOH A 18 518 520 HOH HOH . F 6 HOH A 19 519 527 HOH HOH . F 6 HOH A 20 520 505 HOH HOH . F 6 HOH A 21 521 518 HOH HOH . F 6 HOH A 22 522 509 HOH HOH . F 6 HOH A 23 523 526 HOH HOH . F 6 HOH A 24 524 512 HOH HOH . G 6 HOH B 1 101 529 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 40.47 51.102 10.425 1 45.11 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . D 4 41.513 51.852 9.792 1 51.23 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . D 4 39.919 51.897 11.603 1 50.84 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . D 4 39.526 53.198 11.154 1 60.01 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #