data_7LWB # _model_server_result.job_id zrW8Tfkcx7dvW92KHZbCpA _model_server_result.datetime_utc '2024-11-15 15:43:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 7LWB # _exptl.entry_id 7LWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7LWB _cell.length_a 62.773 _cell.length_b 68.43 _cell.length_c 128.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -64.05 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 74 A ARG 71 1_555 A N TPO 75 A TPO 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C TPO 75 A TPO 72 1_555 A N ILE 76 A ILE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 A OG1 THR 25 A THR 22 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 A OG1 THR 43 A THR 40 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 C O3G GTP . A GTP 900 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc4 C O2B GTP . A GTP 900 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 D MG MG . A MG 901 1_555 E O HOH . A HOH 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 D MG MG . A MG 901 1_555 E O HOH . A HOH 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 7LWB _atom_sites.fract_transf_matrix[1][1] 0.01593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP A 1 900 900 GTP GTP . D 4 MG A 1 901 901 MG MG . E 5 HOH A 1 1001 51 HOH HOH . E 5 HOH A 2 1002 55 HOH HOH . E 5 HOH A 3 1003 14 HOH HOH . E 5 HOH A 4 1004 26 HOH HOH . E 5 HOH A 5 1005 4 HOH HOH . E 5 HOH A 6 1006 6 HOH HOH . E 5 HOH A 7 1007 48 HOH HOH . E 5 HOH A 8 1008 31 HOH HOH . E 5 HOH A 9 1009 52 HOH HOH . E 5 HOH A 10 1010 1 HOH HOH . E 5 HOH A 11 1011 70 HOH HOH . E 5 HOH A 12 1012 34 HOH HOH . E 5 HOH A 13 1013 7 HOH HOH . E 5 HOH A 14 1014 9 HOH HOH . E 5 HOH A 15 1015 16 HOH HOH . E 5 HOH A 16 1016 59 HOH HOH . E 5 HOH A 17 1017 3 HOH HOH . E 5 HOH A 18 1018 17 HOH HOH . E 5 HOH A 19 1019 71 HOH HOH . E 5 HOH A 20 1020 32 HOH HOH . E 5 HOH A 21 1021 65 HOH HOH . E 5 HOH A 22 1022 13 HOH HOH . E 5 HOH A 23 1023 66 HOH HOH . E 5 HOH A 24 1024 20 HOH HOH . E 5 HOH A 25 1025 67 HOH HOH . E 5 HOH A 26 1026 11 HOH HOH . E 5 HOH A 27 1027 2 HOH HOH . E 5 HOH A 28 1028 36 HOH HOH . E 5 HOH A 29 1029 40 HOH HOH . E 5 HOH A 30 1030 23 HOH HOH . E 5 HOH A 31 1031 42 HOH HOH . E 5 HOH A 32 1032 5 HOH HOH . E 5 HOH A 33 1033 29 HOH HOH . E 5 HOH A 34 1034 25 HOH HOH . E 5 HOH A 35 1035 47 HOH HOH . E 5 HOH A 36 1036 49 HOH HOH . E 5 HOH A 37 1037 30 HOH HOH . E 5 HOH A 38 1038 35 HOH HOH . E 5 HOH A 39 1039 50 HOH HOH . E 5 HOH A 40 1040 15 HOH HOH . E 5 HOH A 41 1041 10 HOH HOH . E 5 HOH A 42 1042 39 HOH HOH . E 5 HOH A 43 1043 45 HOH HOH . E 5 HOH A 44 1044 69 HOH HOH . E 5 HOH A 45 1045 54 HOH HOH . E 5 HOH A 46 1046 12 HOH HOH . E 5 HOH A 47 1047 60 HOH HOH . E 5 HOH A 48 1048 58 HOH HOH . E 5 HOH A 49 1049 24 HOH HOH . E 5 HOH A 50 1050 56 HOH HOH . E 5 HOH A 51 1051 64 HOH HOH . E 5 HOH A 52 1052 62 HOH HOH . E 5 HOH A 53 1053 22 HOH HOH . E 5 HOH A 54 1054 38 HOH HOH . F 5 HOH D 1 201 63 HOH HOH . F 5 HOH D 2 202 53 HOH HOH . F 5 HOH D 3 203 8 HOH HOH . F 5 HOH D 4 204 43 HOH HOH . F 5 HOH D 5 205 19 HOH HOH . F 5 HOH D 6 206 41 HOH HOH . F 5 HOH D 7 207 18 HOH HOH . F 5 HOH D 8 208 68 HOH HOH . F 5 HOH D 9 209 57 HOH HOH . F 5 HOH D 10 210 33 HOH HOH . F 5 HOH D 11 211 28 HOH HOH . F 5 HOH D 12 212 21 HOH HOH . F 5 HOH D 13 213 27 HOH HOH . F 5 HOH D 14 214 37 HOH HOH . F 5 HOH D 15 215 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 -3.972 -9.514 -16.504 1 41.56 ? PG GTP 900 A 1 HETATM 2 O O1G GTP . . . C 3 -3.085 -8.375 -16.844 1 41.42 ? O1G GTP 900 A 1 HETATM 3 O O2G GTP . . . C 3 -5.45 -9.144 -16.603 1 41.5 ? O2G GTP 900 A 1 HETATM 4 O O3G GTP . . . C 3 -3.556 -10.682 -17.372 1 40.08 ? O3G GTP 900 A 1 HETATM 5 O O3B GTP . . . C 3 -3.648 -9.798 -14.937 1 42.9 ? O3B GTP 900 A 1 HETATM 6 P PB GTP . . . C 3 -3.983 -11.102 -14.054 1 42.21 ? PB GTP 900 A 1 HETATM 7 O O1B GTP . . . C 3 -5.309 -10.882 -13.41 1 40.8 ? O1B GTP 900 A 1 HETATM 8 O O2B GTP . . . C 3 -3.952 -12.397 -14.904 1 38.86 ? O2B GTP 900 A 1 HETATM 9 O O3A GTP . . . C 3 -2.827 -11.228 -12.998 1 44.87 ? O3A GTP 900 A 1 HETATM 10 P PA GTP . . . C 3 -1.727 -12.371 -12.732 1 47.65 ? PA GTP 900 A 1 HETATM 11 O O1A GTP . . . C 3 -2.371 -13.701 -12.537 1 47.2 ? O1A GTP 900 A 1 HETATM 12 O O2A GTP . . . C 3 -0.604 -12.311 -13.735 1 46.89 ? O2A GTP 900 A 1 HETATM 13 O O5' GTP . . . C 3 -1.205 -11.811 -11.268 1 49.63 ? O5' GTP 900 A 1 HETATM 14 C C5' GTP . . . C 3 -0.72 -10.492 -11.053 1 50.01 ? C5' GTP 900 A 1 HETATM 15 C C4' GTP . . . C 3 0.436 -10.523 -10.041 1 51.36 ? C4' GTP 900 A 1 HETATM 16 O O4' GTP . . . C 3 -0.096 -10.867 -8.769 1 51.37 ? O4' GTP 900 A 1 HETATM 17 C C3' GTP . . . C 3 1.476 -11.587 -10.369 1 51.91 ? C3' GTP 900 A 1 HETATM 18 O O3' GTP . . . C 3 2.756 -11.052 -10.15 1 52.7 ? O3' GTP 900 A 1 HETATM 19 C C2' GTP . . . C 3 1.26 -12.684 -9.33 1 52.27 ? C2' GTP 900 A 1 HETATM 20 O O2' GTP . . . C 3 2.428 -13.358 -8.897 1 51.44 ? O2' GTP 900 A 1 HETATM 21 C C1' GTP . . . C 3 0.554 -11.975 -8.197 1 51.87 ? C1' GTP 900 A 1 HETATM 22 N N9 GTP . . . C 3 -0.463 -12.895 -7.658 1 52.89 ? N9 GTP 900 A 1 HETATM 23 C C8 GTP . . . C 3 -1.501 -13.479 -8.33 1 52.67 ? C8 GTP 900 A 1 HETATM 24 N N7 GTP . . . C 3 -2.223 -14.23 -7.47 1 52.27 ? N7 GTP 900 A 1 HETATM 25 C C5 GTP . . . C 3 -1.667 -14.14 -6.231 1 52.68 ? C5 GTP 900 A 1 HETATM 26 C C6 GTP . . . C 3 -1.995 -14.703 -4.981 1 52.11 ? C6 GTP 900 A 1 HETATM 27 O O6 GTP . . . C 3 -2.971 -15.472 -4.816 1 50.73 ? O6 GTP 900 A 1 HETATM 28 N N1 GTP . . . C 3 -1.206 -14.347 -3.899 1 52.05 ? N1 GTP 900 A 1 HETATM 29 C C2 GTP . . . C 3 -0.104 -13.522 -4.035 1 51.99 ? C2 GTP 900 A 1 HETATM 30 N N2 GTP . . . C 3 0.665 -13.208 -2.99 1 50.68 ? N2 GTP 900 A 1 HETATM 31 N N3 GTP . . . C 3 0.196 -12.974 -5.271 1 52.74 ? N3 GTP 900 A 1 HETATM 32 C C4 GTP . . . C 3 -0.564 -13.288 -6.347 1 53.13 ? C4 GTP 900 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 32 #