data_7LWF # _model_server_result.job_id FNEt0qyl9up_TBcXgl-dlA _model_server_result.datetime_utc '2025-08-31 03:11:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7LWF # _exptl.entry_id 7LWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.307 _cell.angle_gamma 90 _cell.entry_id 7LWF _cell.length_a 30.473 _cell.length_b 72.42 _cell.length_c 55.592 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 15.609342 0 -53.355589 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7LWF _atom_sites.fract_transf_matrix[1][1] 0.032816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0096 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YNA A 1 201 201 YNA YNA . C 3 GOL A 1 202 202 GOL GOL . D 4 HOH A 1 301 412 HOH HOH . D 4 HOH A 2 302 368 HOH HOH . D 4 HOH A 3 303 433 HOH HOH . D 4 HOH A 4 304 337 HOH HOH . D 4 HOH A 5 305 386 HOH HOH . D 4 HOH A 6 306 382 HOH HOH . D 4 HOH A 7 307 395 HOH HOH . D 4 HOH A 8 308 328 HOH HOH . D 4 HOH A 9 309 389 HOH HOH . D 4 HOH A 10 310 407 HOH HOH . D 4 HOH A 11 311 410 HOH HOH . D 4 HOH A 12 312 313 HOH HOH . D 4 HOH A 13 313 335 HOH HOH . D 4 HOH A 14 314 380 HOH HOH . D 4 HOH A 15 315 361 HOH HOH . D 4 HOH A 16 316 343 HOH HOH . D 4 HOH A 17 317 303 HOH HOH . D 4 HOH A 18 318 322 HOH HOH . D 4 HOH A 19 319 403 HOH HOH . D 4 HOH A 20 320 419 HOH HOH . D 4 HOH A 21 321 421 HOH HOH . D 4 HOH A 22 322 339 HOH HOH . D 4 HOH A 23 323 381 HOH HOH . D 4 HOH A 24 324 354 HOH HOH . D 4 HOH A 25 325 334 HOH HOH . D 4 HOH A 26 326 409 HOH HOH . D 4 HOH A 27 327 414 HOH HOH . D 4 HOH A 28 328 308 HOH HOH . D 4 HOH A 29 329 388 HOH HOH . D 4 HOH A 30 330 323 HOH HOH . D 4 HOH A 31 331 320 HOH HOH . D 4 HOH A 32 332 345 HOH HOH . D 4 HOH A 33 333 362 HOH HOH . D 4 HOH A 34 334 363 HOH HOH . D 4 HOH A 35 335 304 HOH HOH . D 4 HOH A 36 336 327 HOH HOH . D 4 HOH A 37 337 314 HOH HOH . D 4 HOH A 38 338 357 HOH HOH . D 4 HOH A 39 339 423 HOH HOH . D 4 HOH A 40 340 310 HOH HOH . D 4 HOH A 41 341 311 HOH HOH . D 4 HOH A 42 342 372 HOH HOH . D 4 HOH A 43 343 428 HOH HOH . D 4 HOH A 44 344 312 HOH HOH . D 4 HOH A 45 345 301 HOH HOH . D 4 HOH A 46 346 307 HOH HOH . D 4 HOH A 47 347 391 HOH HOH . D 4 HOH A 48 348 367 HOH HOH . D 4 HOH A 49 349 374 HOH HOH . D 4 HOH A 50 350 330 HOH HOH . D 4 HOH A 51 351 353 HOH HOH . D 4 HOH A 52 352 319 HOH HOH . D 4 HOH A 53 353 430 HOH HOH . D 4 HOH A 54 354 352 HOH HOH . D 4 HOH A 55 355 340 HOH HOH . D 4 HOH A 56 356 408 HOH HOH . D 4 HOH A 57 357 369 HOH HOH . D 4 HOH A 58 358 371 HOH HOH . D 4 HOH A 59 359 333 HOH HOH . D 4 HOH A 60 360 324 HOH HOH . D 4 HOH A 61 361 418 HOH HOH . D 4 HOH A 62 362 420 HOH HOH . D 4 HOH A 63 363 415 HOH HOH . D 4 HOH A 64 364 325 HOH HOH . D 4 HOH A 65 365 373 HOH HOH . D 4 HOH A 66 366 346 HOH HOH . D 4 HOH A 67 367 401 HOH HOH . D 4 HOH A 68 368 347 HOH HOH . D 4 HOH A 69 369 302 HOH HOH . D 4 HOH A 70 370 309 HOH HOH . D 4 HOH A 71 371 306 HOH HOH . D 4 HOH A 72 372 432 HOH HOH . D 4 HOH A 73 373 305 HOH HOH . D 4 HOH A 74 374 405 HOH HOH . D 4 HOH A 75 375 315 HOH HOH . D 4 HOH A 76 376 375 HOH HOH . D 4 HOH A 77 377 355 HOH HOH . D 4 HOH A 78 378 329 HOH HOH . D 4 HOH A 79 379 332 HOH HOH . D 4 HOH A 80 380 359 HOH HOH . D 4 HOH A 81 381 341 HOH HOH . D 4 HOH A 82 382 358 HOH HOH . D 4 HOH A 83 383 321 HOH HOH . D 4 HOH A 84 384 376 HOH HOH . D 4 HOH A 85 385 384 HOH HOH . D 4 HOH A 86 386 365 HOH HOH . D 4 HOH A 87 387 338 HOH HOH . D 4 HOH A 88 388 351 HOH HOH . D 4 HOH A 89 389 316 HOH HOH . D 4 HOH A 90 390 383 HOH HOH . D 4 HOH A 91 391 349 HOH HOH . D 4 HOH A 92 392 326 HOH HOH . D 4 HOH A 93 393 364 HOH HOH . D 4 HOH A 94 394 350 HOH HOH . D 4 HOH A 95 395 344 HOH HOH . D 4 HOH A 96 396 331 HOH HOH . D 4 HOH A 97 397 356 HOH HOH . D 4 HOH A 98 398 360 HOH HOH . D 4 HOH A 99 399 317 HOH HOH . D 4 HOH A 100 400 427 HOH HOH . D 4 HOH A 101 401 431 HOH HOH . D 4 HOH A 102 402 377 HOH HOH . D 4 HOH A 103 403 385 HOH HOH . D 4 HOH A 104 404 348 HOH HOH . D 4 HOH A 105 405 378 HOH HOH . D 4 HOH A 106 406 370 HOH HOH . D 4 HOH A 107 407 434 HOH HOH . D 4 HOH A 108 408 425 HOH HOH . D 4 HOH A 109 409 413 HOH HOH . D 4 HOH A 110 410 366 HOH HOH . D 4 HOH A 111 411 411 HOH HOH . D 4 HOH A 112 412 398 HOH HOH . D 4 HOH A 113 413 394 HOH HOH . D 4 HOH A 114 414 387 HOH HOH . D 4 HOH A 115 415 400 HOH HOH . D 4 HOH A 116 416 429 HOH HOH . D 4 HOH A 117 417 397 HOH HOH . D 4 HOH A 118 418 406 HOH HOH . D 4 HOH A 119 419 379 HOH HOH . D 4 HOH A 120 420 336 HOH HOH . D 4 HOH A 121 421 426 HOH HOH . D 4 HOH A 122 422 390 HOH HOH . D 4 HOH A 123 423 417 HOH HOH . D 4 HOH A 124 424 416 HOH HOH . D 4 HOH A 125 425 435 HOH HOH . D 4 HOH A 126 426 399 HOH HOH . D 4 HOH A 127 427 436 HOH HOH . D 4 HOH A 128 428 404 HOH HOH . D 4 HOH A 129 429 422 HOH HOH . D 4 HOH A 130 430 392 HOH HOH . D 4 HOH A 131 431 318 HOH HOH . D 4 HOH A 132 432 396 HOH HOH . D 4 HOH A 133 433 393 HOH HOH . D 4 HOH A 134 434 402 HOH HOH . D 4 HOH A 135 435 342 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 8.605 -12.483 -26.958 0.5 22.59 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . C 3 9.463 -12.481 -25.826 0.5 23.47 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . C 3 7.372 -11.657 -26.696 0.5 21.17 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . C 3 7.736 -10.282 -26.659 0.5 23.58 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . C 3 6.656 -12.04 -25.422 0.5 16.62 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . C 3 7.422 -11.805 -24.236 0.5 13.57 ? O3 GOL 202 A 1 HETATM 7 H H11 GOL . . . C 3 8.339 -13.411 -27.168 0.5 27.14 ? H11 GOL 202 A 1 HETATM 8 H H12 GOL . . . C 3 9.088 -12.112 -27.736 0.5 27.14 ? H12 GOL 202 A 1 HETATM 9 H H2 GOL . . . C 3 6.748 -11.793 -27.449 0.5 25.44 ? H2 GOL 202 A 1 HETATM 10 H HO2 GOL . . . C 3 7.028 -9.823 -26.738 0.5 28.32 ? HO2 GOL 202 A 1 HETATM 11 H H31 GOL . . . C 3 6.436 -12.994 -25.479 0.5 19.97 ? H31 GOL 202 A 1 HETATM 12 H H32 GOL . . . C 3 5.821 -11.545 -25.364 0.5 19.97 ? H32 GOL 202 A 1 HETATM 13 H HO3 GOL . . . C 3 7.629 -12.554 -23.9 0.5 16.31 ? HO3 GOL 202 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #