data_7LXB
#
_model_server_result.job_id            97g5DUwqhbsCOfyCIj1irw 
_model_server_result.datetime_utc      '2024-10-20 00:33:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lxb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GA","auth_seq_id":1201}' 
#
_entry.id    7LXB 
#
_exptl.entry_id    7LXB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              669.204 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Cryptophycin 52' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LXB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LXB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 R N N 
? 4 U N N 
? 4 X N N 
? 4 AA N N 
? 4 DA N N 
? 4 GA N N 
? 4 JA N N 
? 4 MA N N 
#
_chem_comp.formula           'C36 H45 Cl N2 O8' 
_chem_comp.formula_weight    669.204 
_chem_comp.id                YGY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Cryptophycin 52' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (3S,10S,13Z,16S)-10-[(3-chloro-4-methoxyphenyl)methyl]-6,6-dimethyl-3-(2-methylpropyl)-16-{(1S)-1-[(2R,3R)-3-phenyloxiran-2-yl]ethyl}-1,4-dioxa-8,11-diazacyclohexadec-13-ene-2,5,9,12-tetrone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C24 YGY doub 469 n y 
C25 C26 YGY sing 470 n y 
C24 C23 YGY sing 471 n y 
C26 C27 YGY doub 472 n y 
C23 C22 YGY doub 473 n y 
C27 C22 YGY sing 474 n y 
C17 C15 YGY sing 475 n n 
C22 C21 YGY sing 476 n n 
C15 C16 YGY sing 477 n n 
C15 C14 YGY sing 478 n n 
C21 O7 YGY sing 479 n n 
C21 C20 YGY sing 480 n n 
O7 C20 YGY sing 481 n n 
C14 C12 YGY sing 482 n n 
C20 C18 YGY sing 483 n n 
C12 C11 YGY sing 484 n n 
C12 O5 YGY sing 485 n n 
C11 O3 YGY sing 486 n n 
C11 O4 YGY doub 487 n n 
C18 C10 YGY sing 488 n n 
C18 C19 YGY sing 489 n n 
O5 C13 YGY sing 490 n n 
O3 C10 YGY sing 491 n n 
O6 C13 YGY doub 492 n n 
C13 C2 YGY sing 493 n n 
C10 C9 YGY sing 494 n n 
C49 C2 YGY sing 495 n n 
C2 C1 YGY sing 496 n n 
C2 C3 YGY sing 497 n n 
C9 C8 YGY sing 498 n n 
O2 C6 YGY doub 499 n n 
C3 N1 YGY sing 500 n n 
C8 C7 YGY doub 501 z n 
C6 C7 YGY sing 502 n n 
C6 N2 YGY sing 503 n n 
N1 C4 YGY sing 504 n n 
N2 C5 YGY sing 505 n n 
C4 C5 YGY sing 506 n n 
C4 O1 YGY doub 507 n n 
C5 C28 YGY sing 508 n n 
C34 C33 YGY doub 509 n y 
C34 C29 YGY sing 510 n y 
C33 C32 YGY sing 511 n y 
C28 C29 YGY sing 512 n n 
C29 C30 YGY doub 513 n y 
C32 O8 YGY sing 514 n n 
C32 C31 YGY doub 515 n y 
O8 C35 YGY sing 516 n n 
C30 C31 YGY sing 517 n y 
C31 CL1 YGY sing 518 n n 
C8 H1 YGY sing 519 n n 
C3 H2 YGY sing 520 n n 
C3 H3 YGY sing 521 n n 
N2 H4 YGY sing 522 n n 
C1 H5 YGY sing 523 n n 
C1 H6 YGY sing 524 n n 
C1 H7 YGY sing 525 n n 
N1 H8 YGY sing 526 n n 
C5 H9 YGY sing 527 n n 
C7 H10 YGY sing 528 n n 
C9 H11 YGY sing 529 n n 
C9 H12 YGY sing 530 n n 
C10 H13 YGY sing 531 n n 
C14 H14 YGY sing 532 n n 
C14 H15 YGY sing 533 n n 
C12 H16 YGY sing 534 n n 
C15 H17 YGY sing 535 n n 
C16 H18 YGY sing 536 n n 
C16 H19 YGY sing 537 n n 
C16 H20 YGY sing 538 n n 
C20 H21 YGY sing 539 n n 
C19 H22 YGY sing 540 n n 
C19 H23 YGY sing 541 n n 
C19 H24 YGY sing 542 n n 
C18 H25 YGY sing 543 n n 
C17 H26 YGY sing 544 n n 
C17 H27 YGY sing 545 n n 
C17 H28 YGY sing 546 n n 
C21 H29 YGY sing 547 n n 
C23 H30 YGY sing 548 n n 
C24 H31 YGY sing 549 n n 
C25 H32 YGY sing 550 n n 
C26 H33 YGY sing 551 n n 
C27 H34 YGY sing 552 n n 
C28 H35 YGY sing 553 n n 
C28 H36 YGY sing 554 n n 
C30 H37 YGY sing 555 n n 
C33 H38 YGY sing 556 n n 
C34 H39 YGY sing 557 n n 
C35 H40 YGY sing 558 n n 
C35 H41 YGY sing 559 n n 
C35 H42 YGY sing 560 n n 
C49 H43 YGY sing 561 n n 
C49 H44 YGY sing 562 n n 
C49 H45 YGY sing 563 n n 
#
_atom_sites.entry_id                     7LXB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 3 GTP A 1 601 601 GTP GTP . 
R 4 YGY B 1 1201 1201 YGY YGY . 
S 5 GDP B 1 1202 1202 GDP GDP . 
T 3 GTP C 1 601 601 GTP GTP . 
U 4 YGY D 1 1201 1201 YGY YGY . 
V 5 GDP D 1 1202 1202 GDP GDP . 
W 3 GTP E 1 601 601 GTP GTP . 
X 4 YGY F 1 1201 1201 YGY YGY . 
Y 5 GDP F 1 1202 1202 GDP GDP . 
Z 3 GTP G 1 601 601 GTP GTP . 
AA 4 YGY H 1 1201 1201 YGY YGY . 
BA 5 GDP H 1 1202 1202 GDP GDP . 
CA 3 GTP I 1 601 601 GTP GTP . 
DA 4 YGY J 1 1201 1201 YGY YGY . 
EA 5 GDP J 1 1202 1202 GDP GDP . 
FA 3 GTP K 1 601 601 GTP GTP . 
GA 4 YGY L 1 1201 1201 YGY YGY . 
HA 5 GDP L 1 1202 1202 GDP GDP . 
IA 3 GTP M 1 601 601 GTP GTP . 
JA 4 YGY N 1 1201 1201 YGY YGY . 
KA 5 GDP N 1 1202 1202 GDP GDP . 
LA 3 GTP O 1 601 601 GTP GTP . 
MA 4 YGY P 1 1201 1201 YGY YGY . 
NA 5 GDP P 1 1202 1202 GDP GDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 YGY . . . GA 4 160.518 156.008 226.802 1 93.23 ? C8 YGY 1201 L 1 
HETATM 2 C C3 YGY . . . GA 4 157.5 152.005 226.802 1 93.23 ? C3 YGY 1201 L 1 
HETATM 3 C C4 YGY . . . GA 4 158.936 151.002 229.12 1 93.23 ? C4 YGY 1201 L 1 
HETATM 4 N N2 YGY . . . GA 4 160.674 152.595 228.418 1 93.23 ? N2 YGY 1201 L 1 
HETATM 5 C C1 YGY . . . GA 4 159.211 150.422 225.894 1 93.23 ? C1 YGY 1201 L 1 
HETATM 6 N N1 YGY . . . GA 4 158.115 151.454 228.002 1 93.23 ? N1 YGY 1201 L 1 
HETATM 7 C C2 YGY . . . GA 4 157.958 151.232 225.559 1 93.23 ? C2 YGY 1201 L 1 
HETATM 8 C C5 YGY . . . GA 4 160.38 151.484 229.317 1 93.23 ? C5 YGY 1201 L 1 
HETATM 9 C C6 YGY . . . GA 4 160.759 153.575 227.34 1 93.23 ? C6 YGY 1201 L 1 
HETATM 10 C C7 YGY . . . GA 4 160.063 154.939 227.436 1 93.23 ? C7 YGY 1201 L 1 
HETATM 11 C C9 YGY . . . GA 4 161.773 155.947 225.925 1 93.23 ? C9 YGY 1201 L 1 
HETATM 12 C C10 YGY . . . GA 4 161.466 156.175 224.44 1 93.23 ? C10 YGY 1201 L 1 
HETATM 13 O O1 YGY . . . GA 4 158.378 150.102 230.038 1 93.23 ? O1 YGY 1201 L 1 
HETATM 14 C C13 YGY . . . GA 4 158.277 152.22 224.428 1 93.23 ? C13 YGY 1201 L 1 
HETATM 15 C C14 YGY . . . GA 4 158.735 153.255 221.765 1 93.23 ? C14 YGY 1201 L 1 
HETATM 16 C C12 YGY . . . GA 4 159.82 153.156 222.844 1 93.23 ? C12 YGY 1201 L 1 
HETATM 17 C C11 YGY . . . GA 4 160.068 154.465 223.613 1 93.23 ? C11 YGY 1201 L 1 
HETATM 18 C C15 YGY . . . GA 4 159.204 152.721 220.407 1 93.23 ? C15 YGY 1201 L 1 
HETATM 19 C C16 YGY . . . GA 4 160.619 152.143 220.453 1 93.23 ? C16 YGY 1201 L 1 
HETATM 20 C C20 YGY . . . GA 4 162.053 157.617 222.408 1 93.23 ? C20 YGY 1201 L 1 
HETATM 21 C C19 YGY . . . GA 4 163.231 158.01 224.64 1 93.23 ? C19 YGY 1201 L 1 
HETATM 22 C C18 YGY . . . GA 4 162.548 156.995 223.721 1 93.23 ? C18 YGY 1201 L 1 
HETATM 23 C C17 YGY . . . GA 4 158.196 151.77 219.762 1 93.23 ? C17 YGY 1201 L 1 
HETATM 24 C C21 YGY . . . GA 4 162.409 156.647 221.198 1 93.23 ? C21 YGY 1201 L 1 
HETATM 25 C C22 YGY . . . GA 4 162.475 156.013 219.804 1 93.23 ? C22 YGY 1201 L 1 
HETATM 26 C C23 YGY . . . GA 4 163.683 155.95 219.125 1 93.23 ? C23 YGY 1201 L 1 
HETATM 27 C C24 YGY . . . GA 4 163.737 155.37 217.854 1 93.23 ? C24 YGY 1201 L 1 
HETATM 28 C C25 YGY . . . GA 4 162.572 154.857 217.276 1 93.23 ? C25 YGY 1201 L 1 
HETATM 29 C C26 YGY . . . GA 4 161.37 154.928 217.967 1 93.23 ? C26 YGY 1201 L 1 
HETATM 30 C C27 YGY . . . GA 4 161.334 155.503 219.219 1 93.23 ? C27 YGY 1201 L 1 
HETATM 31 C C28 YGY . . . GA 4 160.679 151.867 230.771 1 93.23 ? C28 YGY 1201 L 1 
HETATM 32 C C29 YGY . . . GA 4 162.182 151.915 231.085 1 93.23 ? C29 YGY 1201 L 1 
HETATM 33 C C30 YGY . . . GA 4 162.657 152.527 232.253 1 93.23 ? C30 YGY 1201 L 1 
HETATM 34 C C31 YGY . . . GA 4 164.02 152.566 232.529 1 93.23 ? C31 YGY 1201 L 1 
HETATM 35 C C32 YGY . . . GA 4 164.923 152 231.653 1 93.23 ? C32 YGY 1201 L 1 
HETATM 36 C C33 YGY . . . GA 4 164.48 151.393 230.5 1 93.23 ? C33 YGY 1201 L 1 
HETATM 37 C C34 YGY . . . GA 4 163.123 151.35 230.217 1 93.23 ? C34 YGY 1201 L 1 
HETATM 38 C C35 YGY . . . GA 4 166.618 152.951 232.96 1 93.23 ? C35 YGY 1201 L 1 
HETATM 39 C C49 YGY . . . GA 4 156.844 150.285 225.109 1 93.23 ? C49 YGY 1201 L 1 
HETATM 40 O O2 YGY . . . GA 4 161.491 153.232 226.196 1 93.23 ? O2 YGY 1201 L 1 
HETATM 41 O O3 YGY . . . GA 4 161.384 154.917 223.814 1 93.23 ? O3 YGY 1201 L 1 
HETATM 42 O O4 YGY . . . GA 4 159.156 155.097 224.036 1 93.23 ? O4 YGY 1201 L 1 
HETATM 43 O O5 YGY . . . GA 4 159.508 152.118 223.747 1 93.23 ? O5 YGY 1201 L 1 
HETATM 44 O O6 YGY . . . GA 4 157.484 153.055 224.141 1 93.23 ? O6 YGY 1201 L 1 
HETATM 45 O O7 YGY . . . GA 4 163.093 157.794 221.576 1 93.23 ? O7 YGY 1201 L 1 
HETATM 46 O O8 YGY . . . GA 4 166.294 152.046 231.943 1 93.23 ? O8 YGY 1201 L 1 
HETATM 47 CL CL1 YGY . . . GA 4 164.606 153.352 234.023 1 93.23 ? CL1 YGY 1201 L 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    76 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           47 
#