data_7LXI # _model_server_result.job_id y_slif2K76LY1W-zkgI2jQ _model_server_result.datetime_utc '2024-12-12 18:49:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 7LXI # _exptl.entry_id 7LXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7LXI _cell.length_a 103.22 _cell.length_b 103.22 _cell.length_c 49.15 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 337 n n N HN1 SAH sing 338 n n N HN2 SAH sing 339 n n CA CB SAH sing 340 n n CA C SAH sing 341 n n CA HA SAH sing 342 n n CB CG SAH sing 343 n n CB HB1 SAH sing 344 n n CB HB2 SAH sing 345 n n CG SD SAH sing 346 n n CG HG1 SAH sing 347 n n CG HG2 SAH sing 348 n n SD C5' SAH sing 349 n n C O SAH doub 350 n n C OXT SAH sing 351 n n OXT HXT SAH sing 352 n n C5' C4' SAH sing 353 n n C5' "H5'1" SAH sing 354 n n C5' "H5'2" SAH sing 355 n n C4' O4' SAH sing 356 n n C4' C3' SAH sing 357 n n C4' H4' SAH sing 358 n n O4' C1' SAH sing 359 n n C3' O3' SAH sing 360 n n C3' C2' SAH sing 361 n n C3' H3' SAH sing 362 n n O3' HO3' SAH sing 363 n n C2' O2' SAH sing 364 n n C2' C1' SAH sing 365 n n C2' H2' SAH sing 366 n n O2' HO2' SAH sing 367 n n C1' N9 SAH sing 368 n n C1' H1' SAH sing 369 n n N9 C8 SAH sing 370 n y N9 C4 SAH sing 371 n y C8 N7 SAH doub 372 n y C8 H8 SAH sing 373 n n N7 C5 SAH sing 374 n y C5 C6 SAH sing 375 n y C5 C4 SAH doub 376 n y C6 N6 SAH sing 377 n n C6 N1 SAH doub 378 n y N6 HN61 SAH sing 379 n n N6 HN62 SAH sing 380 n n N1 C2 SAH sing 381 n y C2 N3 SAH doub 382 n y C2 H2 SAH sing 383 n n N3 C4 SAH sing 384 n y # _atom_sites.entry_id 7LXI _atom_sites.fract_transf_matrix[1][1] 0.009688 _atom_sites.fract_transf_matrix[1][2] 0.005593 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P6G A 1 301 302 P6G P12 . C 3 NO3 A 1 302 303 NO3 NO3 . D 4 EDO A 1 303 304 EDO EDO . E 5 PO4 A 1 304 305 PO4 PO4 . F 3 NO3 A 1 305 306 NO3 NO3 . G 6 SAH A 1 306 301 SAH SAH . H 7 CL A 1 307 1 CL CL . I 8 HOH A 1 401 86 HOH HOH . I 8 HOH A 2 402 35 HOH HOH . I 8 HOH A 3 403 146 HOH HOH . I 8 HOH A 4 404 60 HOH HOH . I 8 HOH A 5 405 11 HOH HOH . I 8 HOH A 6 406 128 HOH HOH . I 8 HOH A 7 407 213 HOH HOH . I 8 HOH A 8 408 27 HOH HOH . I 8 HOH A 9 409 79 HOH HOH . I 8 HOH A 10 410 188 HOH HOH . I 8 HOH A 11 411 129 HOH HOH . I 8 HOH A 12 412 138 HOH HOH . I 8 HOH A 13 413 89 HOH HOH . I 8 HOH A 14 414 163 HOH HOH . I 8 HOH A 15 415 22 HOH HOH . I 8 HOH A 16 416 162 HOH HOH . I 8 HOH A 17 417 49 HOH HOH . I 8 HOH A 18 418 159 HOH HOH . I 8 HOH A 19 419 189 HOH HOH . I 8 HOH A 20 420 113 HOH HOH . I 8 HOH A 21 421 156 HOH HOH . I 8 HOH A 22 422 118 HOH HOH . I 8 HOH A 23 423 31 HOH HOH . I 8 HOH A 24 424 165 HOH HOH . I 8 HOH A 25 425 217 HOH HOH . I 8 HOH A 26 426 55 HOH HOH . I 8 HOH A 27 427 71 HOH HOH . I 8 HOH A 28 428 13 HOH HOH . I 8 HOH A 29 429 125 HOH HOH . I 8 HOH A 30 430 223 HOH HOH . I 8 HOH A 31 431 158 HOH HOH . I 8 HOH A 32 432 6 HOH HOH . I 8 HOH A 33 433 41 HOH HOH . I 8 HOH A 34 434 42 HOH HOH . I 8 HOH A 35 435 14 HOH HOH . I 8 HOH A 36 436 94 HOH HOH . I 8 HOH A 37 437 130 HOH HOH . I 8 HOH A 38 438 7 HOH HOH . I 8 HOH A 39 439 200 HOH HOH . I 8 HOH A 40 440 207 HOH HOH . I 8 HOH A 41 441 107 HOH HOH . I 8 HOH A 42 442 124 HOH HOH . I 8 HOH A 43 443 21 HOH HOH . I 8 HOH A 44 444 116 HOH HOH . I 8 HOH A 45 445 222 HOH HOH . I 8 HOH A 46 446 131 HOH HOH . I 8 HOH A 47 447 145 HOH HOH . I 8 HOH A 48 448 63 HOH HOH . I 8 HOH A 49 449 108 HOH HOH . I 8 HOH A 50 450 32 HOH HOH . I 8 HOH A 51 451 58 HOH HOH . I 8 HOH A 52 452 90 HOH HOH . I 8 HOH A 53 453 93 HOH HOH . I 8 HOH A 54 454 177 HOH HOH . I 8 HOH A 55 455 180 HOH HOH . I 8 HOH A 56 456 73 HOH HOH . I 8 HOH A 57 457 135 HOH HOH . I 8 HOH A 58 458 105 HOH HOH . I 8 HOH A 59 459 87 HOH HOH . I 8 HOH A 60 460 51 HOH HOH . I 8 HOH A 61 461 45 HOH HOH . I 8 HOH A 62 462 231 HOH HOH . I 8 HOH A 63 463 204 HOH HOH . I 8 HOH A 64 464 33 HOH HOH . I 8 HOH A 65 465 18 HOH HOH . I 8 HOH A 66 466 101 HOH HOH . I 8 HOH A 67 467 15 HOH HOH . I 8 HOH A 68 468 83 HOH HOH . I 8 HOH A 69 469 50 HOH HOH . I 8 HOH A 70 470 195 HOH HOH . I 8 HOH A 71 471 39 HOH HOH . I 8 HOH A 72 472 61 HOH HOH . I 8 HOH A 73 473 120 HOH HOH . I 8 HOH A 74 474 112 HOH HOH . I 8 HOH A 75 475 29 HOH HOH . I 8 HOH A 76 476 44 HOH HOH . I 8 HOH A 77 477 26 HOH HOH . I 8 HOH A 78 478 157 HOH HOH . I 8 HOH A 79 479 72 HOH HOH . I 8 HOH A 80 480 149 HOH HOH . I 8 HOH A 81 481 48 HOH HOH . I 8 HOH A 82 482 92 HOH HOH . I 8 HOH A 83 483 16 HOH HOH . I 8 HOH A 84 484 43 HOH HOH . I 8 HOH A 85 485 202 HOH HOH . I 8 HOH A 86 486 106 HOH HOH . I 8 HOH A 87 487 81 HOH HOH . I 8 HOH A 88 488 111 HOH HOH . I 8 HOH A 89 489 24 HOH HOH . I 8 HOH A 90 490 20 HOH HOH . I 8 HOH A 91 491 193 HOH HOH . I 8 HOH A 92 492 212 HOH HOH . I 8 HOH A 93 493 184 HOH HOH . I 8 HOH A 94 494 77 HOH HOH . I 8 HOH A 95 495 102 HOH HOH . I 8 HOH A 96 496 115 HOH HOH . I 8 HOH A 97 497 36 HOH HOH . I 8 HOH A 98 498 8 HOH HOH . I 8 HOH A 99 499 137 HOH HOH . I 8 HOH A 100 500 80 HOH HOH . I 8 HOH A 101 501 25 HOH HOH . I 8 HOH A 102 502 68 HOH HOH . I 8 HOH A 103 503 46 HOH HOH . I 8 HOH A 104 504 40 HOH HOH . I 8 HOH A 105 505 196 HOH HOH . I 8 HOH A 106 506 123 HOH HOH . I 8 HOH A 107 507 88 HOH HOH . I 8 HOH A 108 508 210 HOH HOH . I 8 HOH A 109 509 69 HOH HOH . I 8 HOH A 110 510 109 HOH HOH . I 8 HOH A 111 511 176 HOH HOH . I 8 HOH A 112 512 62 HOH HOH . I 8 HOH A 113 513 67 HOH HOH . I 8 HOH A 114 514 110 HOH HOH . I 8 HOH A 115 515 198 HOH HOH . I 8 HOH A 116 516 65 HOH HOH . I 8 HOH A 117 517 121 HOH HOH . I 8 HOH A 118 518 74 HOH HOH . I 8 HOH A 119 519 141 HOH HOH . I 8 HOH A 120 520 166 HOH HOH . I 8 HOH A 121 521 59 HOH HOH . I 8 HOH A 122 522 54 HOH HOH . I 8 HOH A 123 523 114 HOH HOH . I 8 HOH A 124 524 96 HOH HOH . I 8 HOH A 125 525 150 HOH HOH . I 8 HOH A 126 526 104 HOH HOH . I 8 HOH A 127 527 70 HOH HOH . I 8 HOH A 128 528 47 HOH HOH . I 8 HOH A 129 529 64 HOH HOH . I 8 HOH A 130 530 119 HOH HOH . I 8 HOH A 131 531 139 HOH HOH . I 8 HOH A 132 532 136 HOH HOH . I 8 HOH A 133 533 230 HOH HOH . I 8 HOH A 134 534 52 HOH HOH . I 8 HOH A 135 535 133 HOH HOH . I 8 HOH A 136 536 132 HOH HOH . I 8 HOH A 137 537 126 HOH HOH . I 8 HOH A 138 538 84 HOH HOH . I 8 HOH A 139 539 75 HOH HOH . I 8 HOH A 140 540 226 HOH HOH . I 8 HOH A 141 541 23 HOH HOH . I 8 HOH A 142 542 220 HOH HOH . I 8 HOH A 143 543 99 HOH HOH . I 8 HOH A 144 544 206 HOH HOH . I 8 HOH A 145 545 224 HOH HOH . I 8 HOH A 146 546 181 HOH HOH . I 8 HOH A 147 547 201 HOH HOH . I 8 HOH A 148 548 127 HOH HOH . I 8 HOH A 149 549 151 HOH HOH . I 8 HOH A 150 550 155 HOH HOH . I 8 HOH A 151 551 170 HOH HOH . I 8 HOH A 152 552 216 HOH HOH . I 8 HOH A 153 553 190 HOH HOH . I 8 HOH A 154 554 185 HOH HOH . I 8 HOH A 155 555 95 HOH HOH . I 8 HOH A 156 556 178 HOH HOH . I 8 HOH A 157 557 122 HOH HOH . I 8 HOH A 158 558 179 HOH HOH . I 8 HOH A 159 559 117 HOH HOH . I 8 HOH A 160 560 56 HOH HOH . I 8 HOH A 161 561 97 HOH HOH . I 8 HOH A 162 562 134 HOH HOH . I 8 HOH A 163 563 37 HOH HOH . I 8 HOH A 164 564 100 HOH HOH . I 8 HOH A 165 565 161 HOH HOH . I 8 HOH A 166 566 154 HOH HOH . I 8 HOH A 167 567 228 HOH HOH . I 8 HOH A 168 568 57 HOH HOH . I 8 HOH A 169 569 191 HOH HOH . I 8 HOH A 170 570 175 HOH HOH . I 8 HOH A 171 571 194 HOH HOH . I 8 HOH A 172 572 205 HOH HOH . I 8 HOH A 173 573 186 HOH HOH . I 8 HOH A 174 574 215 HOH HOH . I 8 HOH A 175 575 76 HOH HOH . I 8 HOH A 176 576 218 HOH HOH . I 8 HOH A 177 577 192 HOH HOH . I 8 HOH A 178 578 103 HOH HOH . I 8 HOH A 179 579 214 HOH HOH . I 8 HOH A 180 580 171 HOH HOH . I 8 HOH A 181 581 168 HOH HOH . I 8 HOH A 182 582 187 HOH HOH . I 8 HOH A 183 583 227 HOH HOH . I 8 HOH A 184 584 82 HOH HOH . I 8 HOH A 185 585 199 HOH HOH . I 8 HOH A 186 586 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . G 6 30.914 14.052 -0.147 1 23.5 ? N SAH 306 A 1 HETATM 2 C CA SAH . . . G 6 31.652 13.24 0.84 1 23.65 ? CA SAH 306 A 1 HETATM 3 C CB SAH . . . G 6 33.105 13.683 1.072 1 26.02 ? CB SAH 306 A 1 HETATM 4 C CG SAH . . . G 6 33.239 15.152 1.459 1 23.36 ? CG SAH 306 A 1 HETATM 5 S SD SAH . . . G 6 35.039 15.401 1.637 1 27.1 ? SD SAH 306 A 1 HETATM 6 C C SAH . . . G 6 30.814 13.386 2.116 1 24.98 ? C SAH 306 A 1 HETATM 7 O O SAH . . . G 6 29.81 14.041 2.168 1 24.87 ? O SAH 306 A 1 HETATM 8 O OXT SAH . . . G 6 31.298 12.716 3.119 1 23.86 ? OXT SAH 306 A 1 HETATM 9 C C5' SAH . . . G 6 35.445 16.327 0.135 1 22.51 ? C5' SAH 306 A 1 HETATM 10 C C4' SAH . . . G 6 35.696 15.417 -1.052 1 25.11 ? C4' SAH 306 A 1 HETATM 11 O O4' SAH . . . G 6 35.911 16.227 -2.235 1 26.59 ? O4' SAH 306 A 1 HETATM 12 C C3' SAH . . . G 6 36.932 14.512 -0.939 1 24.07 ? C3' SAH 306 A 1 HETATM 13 O O3' SAH . . . G 6 36.659 13.247 -1.537 1 23.61 ? O3' SAH 306 A 1 HETATM 14 C C2' SAH . . . G 6 37.974 15.268 -1.777 1 27.78 ? C2' SAH 306 A 1 HETATM 15 O O2' SAH . . . G 6 38.979 14.419 -2.319 1 27.16 ? O2' SAH 306 A 1 HETATM 16 C C1' SAH . . . G 6 37.075 15.77 -2.891 1 23.52 ? C1' SAH 306 A 1 HETATM 17 N N9 SAH . . . G 6 37.615 16.856 -3.705 1 29.61 ? N9 SAH 306 A 1 HETATM 18 C C8 SAH . . . G 6 38.236 18.002 -3.292 1 32.6 ? C8 SAH 306 A 1 HETATM 19 N N7 SAH . . . G 6 38.591 18.809 -4.267 1 32.95 ? N7 SAH 306 A 1 HETATM 20 C C5 SAH . . . G 6 38.175 18.13 -5.41 1 31 ? C5 SAH 306 A 1 HETATM 21 C C6 SAH . . . G 6 38.275 18.44 -6.78 1 33.12 ? C6 SAH 306 A 1 HETATM 22 N N6 SAH . . . G 6 38.825 19.567 -7.257 1 31.5 ? N6 SAH 306 A 1 HETATM 23 N N1 SAH . . . G 6 37.769 17.545 -7.66 1 31.66 ? N1 SAH 306 A 1 HETATM 24 C C2 SAH . . . G 6 37.194 16.432 -7.192 1 31.86 ? C2 SAH 306 A 1 HETATM 25 N N3 SAH . . . G 6 37.042 16.036 -5.924 1 29.16 ? N3 SAH 306 A 1 HETATM 26 C C4 SAH . . . G 6 37.567 16.935 -5.075 1 32.12 ? C4 SAH 306 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #