data_7LYH # _model_server_result.job_id 8NS1WUZiCd_zjEKp5zNTDA _model_server_result.datetime_utc '2024-11-21 08:47:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7LYH # _exptl.entry_id 7LYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.71 _cell.angle_gamma 90 _cell.entry_id 7LYH _cell.length_a 45.62 _cell.length_b 53.02 _cell.length_c 112.959 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C29 _struct_conn.ptnr2_label_comp_id YHJ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id YHJ _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.682 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7LYH _atom_sites.fract_transf_matrix[1][1] 0.02192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004146 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YHJ A 1 401 401 YHJ LIG . C 3 GOL A 1 402 501 GOL GOL . D 3 GOL A 1 403 601 GOL GOL . E 4 HOH A 1 501 129 HOH HOH . E 4 HOH A 2 502 66 HOH HOH . E 4 HOH A 3 503 37 HOH HOH . E 4 HOH A 4 504 304 HOH HOH . E 4 HOH A 5 505 17 HOH HOH . E 4 HOH A 6 506 78 HOH HOH . E 4 HOH A 7 507 297 HOH HOH . E 4 HOH A 8 508 26 HOH HOH . E 4 HOH A 9 509 267 HOH HOH . E 4 HOH A 10 510 161 HOH HOH . E 4 HOH A 11 511 20 HOH HOH . E 4 HOH A 12 512 303 HOH HOH . E 4 HOH A 13 513 160 HOH HOH . E 4 HOH A 14 514 77 HOH HOH . E 4 HOH A 15 515 173 HOH HOH . E 4 HOH A 16 516 287 HOH HOH . E 4 HOH A 17 517 83 HOH HOH . E 4 HOH A 18 518 2 HOH HOH . E 4 HOH A 19 519 285 HOH HOH . E 4 HOH A 20 520 68 HOH HOH . E 4 HOH A 21 521 11 HOH HOH . E 4 HOH A 22 522 185 HOH HOH . E 4 HOH A 23 523 168 HOH HOH . E 4 HOH A 24 524 239 HOH HOH . E 4 HOH A 25 525 99 HOH HOH . E 4 HOH A 26 526 278 HOH HOH . E 4 HOH A 27 527 85 HOH HOH . E 4 HOH A 28 528 89 HOH HOH . E 4 HOH A 29 529 290 HOH HOH . E 4 HOH A 30 530 123 HOH HOH . E 4 HOH A 31 531 79 HOH HOH . E 4 HOH A 32 532 137 HOH HOH . E 4 HOH A 33 533 58 HOH HOH . E 4 HOH A 34 534 60 HOH HOH . E 4 HOH A 35 535 33 HOH HOH . E 4 HOH A 36 536 32 HOH HOH . E 4 HOH A 37 537 179 HOH HOH . E 4 HOH A 38 538 295 HOH HOH . E 4 HOH A 39 539 15 HOH HOH . E 4 HOH A 40 540 91 HOH HOH . E 4 HOH A 41 541 284 HOH HOH . E 4 HOH A 42 542 75 HOH HOH . E 4 HOH A 43 543 301 HOH HOH . E 4 HOH A 44 544 9 HOH HOH . E 4 HOH A 45 545 81 HOH HOH . E 4 HOH A 46 546 134 HOH HOH . E 4 HOH A 47 547 18 HOH HOH . E 4 HOH A 48 548 141 HOH HOH . E 4 HOH A 49 549 192 HOH HOH . E 4 HOH A 50 550 51 HOH HOH . E 4 HOH A 51 551 23 HOH HOH . E 4 HOH A 52 552 223 HOH HOH . E 4 HOH A 53 553 231 HOH HOH . E 4 HOH A 54 554 127 HOH HOH . E 4 HOH A 55 555 133 HOH HOH . E 4 HOH A 56 556 62 HOH HOH . E 4 HOH A 57 557 293 HOH HOH . E 4 HOH A 58 558 204 HOH HOH . E 4 HOH A 59 559 59 HOH HOH . E 4 HOH A 60 560 176 HOH HOH . E 4 HOH A 61 561 199 HOH HOH . E 4 HOH A 62 562 87 HOH HOH . E 4 HOH A 63 563 154 HOH HOH . E 4 HOH A 64 564 19 HOH HOH . E 4 HOH A 65 565 286 HOH HOH . E 4 HOH A 66 566 4 HOH HOH . E 4 HOH A 67 567 128 HOH HOH . E 4 HOH A 68 568 56 HOH HOH . E 4 HOH A 69 569 39 HOH HOH . E 4 HOH A 70 570 169 HOH HOH . E 4 HOH A 71 571 55 HOH HOH . E 4 HOH A 72 572 10 HOH HOH . E 4 HOH A 73 573 171 HOH HOH . E 4 HOH A 74 574 3 HOH HOH . E 4 HOH A 75 575 48 HOH HOH . E 4 HOH A 76 576 30 HOH HOH . E 4 HOH A 77 577 211 HOH HOH . E 4 HOH A 78 578 22 HOH HOH . E 4 HOH A 79 579 28 HOH HOH . E 4 HOH A 80 580 112 HOH HOH . E 4 HOH A 81 581 35 HOH HOH . E 4 HOH A 82 582 86 HOH HOH . E 4 HOH A 83 583 175 HOH HOH . E 4 HOH A 84 584 90 HOH HOH . E 4 HOH A 85 585 88 HOH HOH . E 4 HOH A 86 586 65 HOH HOH . E 4 HOH A 87 587 194 HOH HOH . E 4 HOH A 88 588 46 HOH HOH . E 4 HOH A 89 589 96 HOH HOH . E 4 HOH A 90 590 111 HOH HOH . E 4 HOH A 91 591 203 HOH HOH . E 4 HOH A 92 592 110 HOH HOH . E 4 HOH A 93 593 124 HOH HOH . E 4 HOH A 94 594 220 HOH HOH . E 4 HOH A 95 595 131 HOH HOH . E 4 HOH A 96 596 302 HOH HOH . E 4 HOH A 97 597 12 HOH HOH . E 4 HOH A 98 598 95 HOH HOH . E 4 HOH A 99 599 24 HOH HOH . E 4 HOH A 100 600 269 HOH HOH . E 4 HOH A 101 601 27 HOH HOH . E 4 HOH A 102 602 105 HOH HOH . E 4 HOH A 103 603 98 HOH HOH . E 4 HOH A 104 604 1 HOH HOH . E 4 HOH A 105 605 150 HOH HOH . E 4 HOH A 106 606 238 HOH HOH . E 4 HOH A 107 607 248 HOH HOH . E 4 HOH A 108 608 140 HOH HOH . E 4 HOH A 109 609 36 HOH HOH . E 4 HOH A 110 610 93 HOH HOH . E 4 HOH A 111 611 104 HOH HOH . E 4 HOH A 112 612 72 HOH HOH . E 4 HOH A 113 613 119 HOH HOH . E 4 HOH A 114 614 209 HOH HOH . E 4 HOH A 115 615 166 HOH HOH . E 4 HOH A 116 616 16 HOH HOH . E 4 HOH A 117 617 61 HOH HOH . E 4 HOH A 118 618 283 HOH HOH . E 4 HOH A 119 619 42 HOH HOH . E 4 HOH A 120 620 44 HOH HOH . E 4 HOH A 121 621 25 HOH HOH . E 4 HOH A 122 622 187 HOH HOH . E 4 HOH A 123 623 97 HOH HOH . E 4 HOH A 124 624 84 HOH HOH . E 4 HOH A 125 625 14 HOH HOH . E 4 HOH A 126 626 50 HOH HOH . E 4 HOH A 127 627 122 HOH HOH . E 4 HOH A 128 628 29 HOH HOH . E 4 HOH A 129 629 296 HOH HOH . E 4 HOH A 130 630 94 HOH HOH . E 4 HOH A 131 631 82 HOH HOH . E 4 HOH A 132 632 222 HOH HOH . E 4 HOH A 133 633 7 HOH HOH . E 4 HOH A 134 634 138 HOH HOH . E 4 HOH A 135 635 67 HOH HOH . E 4 HOH A 136 636 41 HOH HOH . E 4 HOH A 137 637 195 HOH HOH . E 4 HOH A 138 638 70 HOH HOH . E 4 HOH A 139 639 5 HOH HOH . E 4 HOH A 140 640 201 HOH HOH . E 4 HOH A 141 641 202 HOH HOH . E 4 HOH A 142 642 49 HOH HOH . E 4 HOH A 143 643 273 HOH HOH . E 4 HOH A 144 644 291 HOH HOH . E 4 HOH A 145 645 13 HOH HOH . E 4 HOH A 146 646 266 HOH HOH . E 4 HOH A 147 647 76 HOH HOH . E 4 HOH A 148 648 114 HOH HOH . E 4 HOH A 149 649 54 HOH HOH . E 4 HOH A 150 650 237 HOH HOH . E 4 HOH A 151 651 43 HOH HOH . E 4 HOH A 152 652 148 HOH HOH . E 4 HOH A 153 653 213 HOH HOH . E 4 HOH A 154 654 221 HOH HOH . E 4 HOH A 155 655 268 HOH HOH . E 4 HOH A 156 656 289 HOH HOH . E 4 HOH A 157 657 280 HOH HOH . E 4 HOH A 158 658 115 HOH HOH . E 4 HOH A 159 659 125 HOH HOH . E 4 HOH A 160 660 64 HOH HOH . E 4 HOH A 161 661 250 HOH HOH . E 4 HOH A 162 662 288 HOH HOH . E 4 HOH A 163 663 6 HOH HOH . E 4 HOH A 164 664 69 HOH HOH . E 4 HOH A 165 665 130 HOH HOH . E 4 HOH A 166 666 92 HOH HOH . E 4 HOH A 167 667 274 HOH HOH . E 4 HOH A 168 668 272 HOH HOH . E 4 HOH A 169 669 8 HOH HOH . E 4 HOH A 170 670 21 HOH HOH . E 4 HOH A 171 671 277 HOH HOH . E 4 HOH A 172 672 233 HOH HOH . E 4 HOH A 173 673 152 HOH HOH . E 4 HOH A 174 674 120 HOH HOH . E 4 HOH A 175 675 74 HOH HOH . E 4 HOH A 176 676 282 HOH HOH . E 4 HOH A 177 677 101 HOH HOH . E 4 HOH A 178 678 300 HOH HOH . E 4 HOH A 179 679 292 HOH HOH . E 4 HOH A 180 680 143 HOH HOH . E 4 HOH A 181 681 270 HOH HOH . E 4 HOH A 182 682 63 HOH HOH . E 4 HOH A 183 683 271 HOH HOH . E 4 HOH A 184 684 298 HOH HOH . E 4 HOH A 185 685 73 HOH HOH . E 4 HOH A 186 686 100 HOH HOH . E 4 HOH A 187 687 163 HOH HOH . E 4 HOH A 188 688 276 HOH HOH . E 4 HOH A 189 689 294 HOH HOH . E 4 HOH A 190 690 109 HOH HOH . E 4 HOH A 191 691 142 HOH HOH . E 4 HOH A 192 692 153 HOH HOH . E 4 HOH A 193 693 275 HOH HOH . E 4 HOH A 194 694 145 HOH HOH . E 4 HOH A 195 695 265 HOH HOH . E 4 HOH A 196 696 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 3.765 -14.324 21.45 1 34.57 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 3 4.02 -14.03 22.82 1 37.29 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 3 2.287 -14.497 21.176 1 30.3 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 3 1.505 -13.821 22.156 1 37.3 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 3 1.856 -15.941 21.082 1 33.08 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 3 0.437 -16.065 21.102 1 32.65 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #