data_7LYI # _model_server_result.job_id SW61TiFAiJpNJecI_FzxsQ _model_server_result.datetime_utc '2024-11-16 08:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7LYI # _exptl.entry_id 7LYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.1 _cell.angle_gamma 90 _cell.entry_id 7LYI _cell.length_a 113.9 _cell.length_b 54.31 _cell.length_c 45.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 147 A CYS 145 1_555 D C29 YHI . A YHI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? metalc ? metalc1 A O VAL 79 A VAL 77 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc2 C NA NA . A NA 502 1_555 E O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? metalc ? metalc3 C NA NA . A NA 502 1_555 E O HOH . A HOH 665 1_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7LYI _atom_sites.fract_transf_matrix[1][1] 0.00878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001722 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 501 GOL GOL . C 3 NA A 1 502 502 NA NA . D 4 YHI A 1 503 601 YHI LIG . E 5 HOH A 1 601 233 HOH HOH . E 5 HOH A 2 602 234 HOH HOH . E 5 HOH A 3 603 238 HOH HOH . E 5 HOH A 4 604 91 HOH HOH . E 5 HOH A 5 605 241 HOH HOH . E 5 HOH A 6 606 243 HOH HOH . E 5 HOH A 7 607 26 HOH HOH . E 5 HOH A 8 608 129 HOH HOH . E 5 HOH A 9 609 235 HOH HOH . E 5 HOH A 10 610 42 HOH HOH . E 5 HOH A 11 611 237 HOH HOH . E 5 HOH A 12 612 4 HOH HOH . E 5 HOH A 13 613 101 HOH HOH . E 5 HOH A 14 614 95 HOH HOH . E 5 HOH A 15 615 17 HOH HOH . E 5 HOH A 16 616 43 HOH HOH . E 5 HOH A 17 617 56 HOH HOH . E 5 HOH A 18 618 24 HOH HOH . E 5 HOH A 19 619 9 HOH HOH . E 5 HOH A 20 620 166 HOH HOH . E 5 HOH A 21 621 45 HOH HOH . E 5 HOH A 22 622 53 HOH HOH . E 5 HOH A 23 623 94 HOH HOH . E 5 HOH A 24 624 21 HOH HOH . E 5 HOH A 25 625 71 HOH HOH . E 5 HOH A 26 626 92 HOH HOH . E 5 HOH A 27 627 16 HOH HOH . E 5 HOH A 28 628 20 HOH HOH . E 5 HOH A 29 629 87 HOH HOH . E 5 HOH A 30 630 76 HOH HOH . E 5 HOH A 31 631 15 HOH HOH . E 5 HOH A 32 632 22 HOH HOH . E 5 HOH A 33 633 39 HOH HOH . E 5 HOH A 34 634 63 HOH HOH . E 5 HOH A 35 635 28 HOH HOH . E 5 HOH A 36 636 2 HOH HOH . E 5 HOH A 37 637 64 HOH HOH . E 5 HOH A 38 638 31 HOH HOH . E 5 HOH A 39 639 34 HOH HOH . E 5 HOH A 40 640 12 HOH HOH . E 5 HOH A 41 641 23 HOH HOH . E 5 HOH A 42 642 38 HOH HOH . E 5 HOH A 43 643 75 HOH HOH . E 5 HOH A 44 644 33 HOH HOH . E 5 HOH A 45 645 1 HOH HOH . E 5 HOH A 46 646 127 HOH HOH . E 5 HOH A 47 647 82 HOH HOH . E 5 HOH A 48 648 67 HOH HOH . E 5 HOH A 49 649 112 HOH HOH . E 5 HOH A 50 650 5 HOH HOH . E 5 HOH A 51 651 35 HOH HOH . E 5 HOH A 52 652 44 HOH HOH . E 5 HOH A 53 653 242 HOH HOH . E 5 HOH A 54 654 230 HOH HOH . E 5 HOH A 55 655 10 HOH HOH . E 5 HOH A 56 656 29 HOH HOH . E 5 HOH A 57 657 47 HOH HOH . E 5 HOH A 58 658 70 HOH HOH . E 5 HOH A 59 659 3 HOH HOH . E 5 HOH A 60 660 223 HOH HOH . E 5 HOH A 61 661 65 HOH HOH . E 5 HOH A 62 662 186 HOH HOH . E 5 HOH A 63 663 58 HOH HOH . E 5 HOH A 64 664 128 HOH HOH . E 5 HOH A 65 665 231 HOH HOH . E 5 HOH A 66 666 57 HOH HOH . E 5 HOH A 67 667 136 HOH HOH . E 5 HOH A 68 668 60 HOH HOH . E 5 HOH A 69 669 48 HOH HOH . E 5 HOH A 70 670 25 HOH HOH . E 5 HOH A 71 671 147 HOH HOH . E 5 HOH A 72 672 96 HOH HOH . E 5 HOH A 73 673 69 HOH HOH . E 5 HOH A 74 674 232 HOH HOH . E 5 HOH A 75 675 228 HOH HOH . E 5 HOH A 76 676 18 HOH HOH . E 5 HOH A 77 677 74 HOH HOH . E 5 HOH A 78 678 116 HOH HOH . E 5 HOH A 79 679 13 HOH HOH . E 5 HOH A 80 680 37 HOH HOH . E 5 HOH A 81 681 7 HOH HOH . E 5 HOH A 82 682 27 HOH HOH . E 5 HOH A 83 683 8 HOH HOH . E 5 HOH A 84 684 14 HOH HOH . E 5 HOH A 85 685 244 HOH HOH . E 5 HOH A 86 686 246 HOH HOH . E 5 HOH A 87 687 226 HOH HOH . E 5 HOH A 88 688 124 HOH HOH . E 5 HOH A 89 689 221 HOH HOH . E 5 HOH A 90 690 229 HOH HOH . E 5 HOH A 91 691 148 HOH HOH . E 5 HOH A 92 692 40 HOH HOH . E 5 HOH A 93 693 236 HOH HOH . E 5 HOH A 94 694 114 HOH HOH . E 5 HOH A 95 695 83 HOH HOH . E 5 HOH A 96 696 109 HOH HOH . E 5 HOH A 97 697 49 HOH HOH . E 5 HOH A 98 698 99 HOH HOH . E 5 HOH A 99 699 152 HOH HOH . E 5 HOH A 100 700 239 HOH HOH . E 5 HOH A 101 701 104 HOH HOH . E 5 HOH A 102 702 219 HOH HOH . E 5 HOH A 103 703 247 HOH HOH . E 5 HOH A 104 704 220 HOH HOH . E 5 HOH A 105 705 222 HOH HOH . E 5 HOH A 106 706 225 HOH HOH . E 5 HOH A 107 707 121 HOH HOH . E 5 HOH A 108 708 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -15.085 -55.016 -27.818 1 48.29 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -16.262 -55.528 -27.198 1 58.38 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -14.779 -53.625 -27.317 1 56.53 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -13.805 -52.985 -28.141 1 69.69 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -16.014 -52.757 -27.241 1 51.57 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -15.677 -51.386 -27.427 1 66.59 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #