data_7LZ4 # _model_server_result.job_id QcKjCVQp83AgGTVWHkJzpA _model_server_result.datetime_utc '2025-08-28 22:48:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":402}' # _entry.id 7LZ4 # _exptl.entry_id 7LZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7LZ4 _cell.length_a 176.786 _cell.length_b 176.786 _cell.length_c 345.503 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J 1 1 B,K,L 2 1 C,M,N 3 1 D,O,P 4 1 E,Q,R 5 1 F,S,T 6 1 G,U,V 7 1 H,W,X 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 7LZ4 _atom_sites.fract_transf_matrix[1][1] 0.005657 _atom_sites.fract_transf_matrix[1][2] 0.003266 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 CMP A 1 401 401 CMP CMP . J 2 CMP A 1 402 601 CMP CMP . K 2 CMP B 1 401 401 CMP CMP . L 2 CMP B 1 402 601 CMP CMP . M 2 CMP C 1 401 401 CMP CMP . N 2 CMP C 1 402 601 CMP CMP . O 2 CMP D 1 401 401 CMP CMP . P 2 CMP D 1 402 601 CMP CMP . Q 2 CMP E 1 401 401 CMP CMP . R 2 CMP E 1 402 601 CMP CMP . S 2 CMP F 1 401 401 CMP CMP . T 2 CMP F 1 402 601 CMP CMP . U 2 CMP G 1 401 401 CMP CMP . V 2 CMP G 1 402 601 CMP CMP . W 2 CMP H 1 401 401 CMP CMP . X 2 CMP H 1 402 601 CMP CMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . R 2 -78.176 29.095 16.236 1 210.13 ? P CMP 402 E 1 HETATM 2 O O1P CMP . . . R 2 -76.819 28.49 16.604 1 118.02 ? O1P CMP 402 E 1 HETATM 3 O O2P CMP . . . R 2 -79.16 29.375 17.341 1 206 ? O2P CMP 402 E 1 HETATM 4 O O5' CMP . . . R 2 -78.904 28.215 15.076 1 201.34 ? O5' CMP 402 E 1 HETATM 5 C C5' CMP . . . R 2 -79.916 28.787 14.232 1 174.54 ? C5' CMP 402 E 1 HETATM 6 C C4' CMP . . . R 2 -79.482 30.161 13.817 1 189.85 ? C4' CMP 402 E 1 HETATM 7 O O4' CMP . . . R 2 -80.513 30.919 13.153 1 186.06 ? O4' CMP 402 E 1 HETATM 8 C C3' CMP . . . R 2 -79.115 31.075 14.949 1 182.39 ? C3' CMP 402 E 1 HETATM 9 O O3' CMP . . . R 2 -77.964 30.628 15.654 1 150.45 ? O3' CMP 402 E 1 HETATM 10 C C2' CMP . . . R 2 -78.992 32.425 14.231 1 174.11 ? C2' CMP 402 E 1 HETATM 11 O O2' CMP . . . R 2 -77.723 32.573 13.63 1 148.69 ? O2' CMP 402 E 1 HETATM 12 C C1' CMP . . . R 2 -80.034 32.262 13.102 1 186.1 ? C1' CMP 402 E 1 HETATM 13 N N9 CMP . . . R 2 -81.142 33.241 13.199 1 212.2 ? N9 CMP 402 E 1 HETATM 14 C C8 CMP . . . R 2 -81.87 33.687 12.157 1 204.47 ? C8 CMP 402 E 1 HETATM 15 N N7 CMP . . . R 2 -82.782 34.628 12.53 1 201.57 ? N7 CMP 402 E 1 HETATM 16 C C5 CMP . . . R 2 -82.626 34.845 13.859 1 233.52 ? C5 CMP 402 E 1 HETATM 17 C C6 CMP . . . R 2 -83.258 35.715 14.914 1 242.27 ? C6 CMP 402 E 1 HETATM 18 N N6 CMP . . . R 2 -84.275 36.583 14.656 1 228.25 ? N6 CMP 402 E 1 HETATM 19 N N1 CMP . . . R 2 -82.781 35.616 16.181 1 225.72 ? N1 CMP 402 E 1 HETATM 20 C C2 CMP . . . R 2 -81.775 34.77 16.496 1 205.15 ? C2 CMP 402 E 1 HETATM 21 N N3 CMP . . . R 2 -81.16 33.959 15.605 1 216.87 ? N3 CMP 402 E 1 HETATM 22 C C4 CMP . . . R 2 -81.527 33.939 14.288 1 227.87 ? C4 CMP 402 E 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 417 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #