data_7LZ5
#
_model_server_result.job_id            WJQB-f3-ajOniag-nRM1xA 
_model_server_result.datetime_utc      '2025-08-31 11:55:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lz5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    7LZ5 
#
_exptl.entry_id    7LZ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              521.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7LZ5 
_cell.length_a            94.413 
_cell.length_b            94.413 
_cell.length_c            119.326 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LZ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    'R 3 2"' 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc2 B O2G GCP . A GCP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc3 B O2B GCP . A GCP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc4 C MG MG . A MG 202 1_555 D O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc5 C MG MG . A MG 202 1_555 D O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc6 C MG MG . A MG 202 1_555 D O HOH . A HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
#
_chem_comp.formula           'C11 H18 N5 O13 P3' 
_chem_comp.formula_weight    521.208 
_chem_comp.id                GCP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GCP doub 83 n n 
PG O2G GCP sing 84 n n 
PG O3G GCP sing 85 n n 
PG C3B GCP sing 86 n n 
O2G HOG2 GCP sing 87 n n 
O3G HOG3 GCP sing 88 n n 
C3B PB GCP sing 89 n n 
C3B H3B1 GCP sing 90 n n 
C3B H3B2 GCP sing 91 n n 
PB O1B GCP doub 92 n n 
PB O2B GCP sing 93 n n 
PB O3A GCP sing 94 n n 
O2B HOB2 GCP sing 95 n n 
O3A PA GCP sing 96 n n 
PA O1A GCP doub 97 n n 
PA O2A GCP sing 98 n n 
PA O5' GCP sing 99 n n 
O2A HOA2 GCP sing 100 n n 
O5' C5' GCP sing 101 n n 
C5' C4' GCP sing 102 n n 
C5' "H5'2" GCP sing 103 n n 
C5' "H5'1" GCP sing 104 n n 
C4' O4' GCP sing 105 n n 
C4' C3' GCP sing 106 n n 
C4' H4' GCP sing 107 n n 
O4' C1' GCP sing 108 n n 
C3' O3' GCP sing 109 n n 
C3' C2' GCP sing 110 n n 
C3' H3' GCP sing 111 n n 
O3' HO3' GCP sing 112 n n 
C2' O2' GCP sing 113 n n 
C2' C1' GCP sing 114 n n 
C2' H2' GCP sing 115 n n 
O2' HO2' GCP sing 116 n n 
C1' N9 GCP sing 117 n n 
C1' H1' GCP sing 118 n n 
N9 C8 GCP sing 119 n y 
N9 C4 GCP sing 120 n y 
C8 N7 GCP doub 121 n y 
C8 H8 GCP sing 122 n n 
N7 C5 GCP sing 123 n y 
C5 C6 GCP sing 124 n y 
C5 C4 GCP doub 125 n y 
C6 O6 GCP doub 126 n n 
C6 N1 GCP sing 127 n y 
N1 C2 GCP sing 128 n y 
N1 HN1 GCP sing 129 n n 
C2 N2 GCP sing 130 n n 
C2 N3 GCP doub 131 n y 
N2 HN21 GCP sing 132 n n 
N2 HN22 GCP sing 133 n n 
N3 C4 GCP sing 134 n y 
#
_atom_sites.entry_id                     7LZ5 
_atom_sites.fract_transf_matrix[1][1]    0.010592 
_atom_sites.fract_transf_matrix[1][2]    0.006115 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01223 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00838 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GCP A 1 201 201 GCP GCP . 
C 3 MG A 1 202 1 MG MG . 
D 4 HOH A 1 301 133 HOH HOH . 
D 4 HOH A 2 302 99 HOH HOH . 
D 4 HOH A 3 303 19 HOH HOH . 
D 4 HOH A 4 304 12 HOH HOH . 
D 4 HOH A 5 305 86 HOH HOH . 
D 4 HOH A 6 306 53 HOH HOH . 
D 4 HOH A 7 307 43 HOH HOH . 
D 4 HOH A 8 308 61 HOH HOH . 
D 4 HOH A 9 309 67 HOH HOH . 
D 4 HOH A 10 310 141 HOH HOH . 
D 4 HOH A 11 311 57 HOH HOH . 
D 4 HOH A 12 312 82 HOH HOH . 
D 4 HOH A 13 313 55 HOH HOH . 
D 4 HOH A 14 314 120 HOH HOH . 
D 4 HOH A 15 315 7 HOH HOH . 
D 4 HOH A 16 316 17 HOH HOH . 
D 4 HOH A 17 317 97 HOH HOH . 
D 4 HOH A 18 318 41 HOH HOH . 
D 4 HOH A 19 319 63 HOH HOH . 
D 4 HOH A 20 320 60 HOH HOH . 
D 4 HOH A 21 321 59 HOH HOH . 
D 4 HOH A 22 322 109 HOH HOH . 
D 4 HOH A 23 323 10 HOH HOH . 
D 4 HOH A 24 324 20 HOH HOH . 
D 4 HOH A 25 325 108 HOH HOH . 
D 4 HOH A 26 326 118 HOH HOH . 
D 4 HOH A 27 327 26 HOH HOH . 
D 4 HOH A 28 328 139 HOH HOH . 
D 4 HOH A 29 329 130 HOH HOH . 
D 4 HOH A 30 330 88 HOH HOH . 
D 4 HOH A 31 331 39 HOH HOH . 
D 4 HOH A 32 332 48 HOH HOH . 
D 4 HOH A 33 333 46 HOH HOH . 
D 4 HOH A 34 334 9 HOH HOH . 
D 4 HOH A 35 335 15 HOH HOH . 
D 4 HOH A 36 336 45 HOH HOH . 
D 4 HOH A 37 337 32 HOH HOH . 
D 4 HOH A 38 338 34 HOH HOH . 
D 4 HOH A 39 339 76 HOH HOH . 
D 4 HOH A 40 340 98 HOH HOH . 
D 4 HOH A 41 341 8 HOH HOH . 
D 4 HOH A 42 342 124 HOH HOH . 
D 4 HOH A 43 343 107 HOH HOH . 
D 4 HOH A 44 344 87 HOH HOH . 
D 4 HOH A 45 345 131 HOH HOH . 
D 4 HOH A 46 346 40 HOH HOH . 
D 4 HOH A 47 347 24 HOH HOH . 
D 4 HOH A 48 348 64 HOH HOH . 
D 4 HOH A 49 349 27 HOH HOH . 
D 4 HOH A 50 350 4 HOH HOH . 
D 4 HOH A 51 351 121 HOH HOH . 
D 4 HOH A 52 352 16 HOH HOH . 
D 4 HOH A 53 353 112 HOH HOH . 
D 4 HOH A 54 354 149 HOH HOH . 
D 4 HOH A 55 355 106 HOH HOH . 
D 4 HOH A 56 356 58 HOH HOH . 
D 4 HOH A 57 357 3 HOH HOH . 
D 4 HOH A 58 358 36 HOH HOH . 
D 4 HOH A 59 359 89 HOH HOH . 
D 4 HOH A 60 360 138 HOH HOH . 
D 4 HOH A 61 361 50 HOH HOH . 
D 4 HOH A 62 362 119 HOH HOH . 
D 4 HOH A 63 363 30 HOH HOH . 
D 4 HOH A 64 364 77 HOH HOH . 
D 4 HOH A 65 365 91 HOH HOH . 
D 4 HOH A 66 366 38 HOH HOH . 
D 4 HOH A 67 367 72 HOH HOH . 
D 4 HOH A 68 368 73 HOH HOH . 
D 4 HOH A 69 369 2 HOH HOH . 
D 4 HOH A 70 370 6 HOH HOH . 
D 4 HOH A 71 371 110 HOH HOH . 
D 4 HOH A 72 372 54 HOH HOH . 
D 4 HOH A 73 373 147 HOH HOH . 
D 4 HOH A 74 374 25 HOH HOH . 
D 4 HOH A 75 375 140 HOH HOH . 
D 4 HOH A 76 376 11 HOH HOH . 
D 4 HOH A 77 377 33 HOH HOH . 
D 4 HOH A 78 378 71 HOH HOH . 
D 4 HOH A 79 379 94 HOH HOH . 
D 4 HOH A 80 380 22 HOH HOH . 
D 4 HOH A 81 381 18 HOH HOH . 
D 4 HOH A 82 382 150 HOH HOH . 
D 4 HOH A 83 383 52 HOH HOH . 
D 4 HOH A 84 384 75 HOH HOH . 
D 4 HOH A 85 385 145 HOH HOH . 
D 4 HOH A 86 386 14 HOH HOH . 
D 4 HOH A 87 387 129 HOH HOH . 
D 4 HOH A 88 388 13 HOH HOH . 
D 4 HOH A 89 389 68 HOH HOH . 
D 4 HOH A 90 390 70 HOH HOH . 
D 4 HOH A 91 391 85 HOH HOH . 
D 4 HOH A 92 392 42 HOH HOH . 
D 4 HOH A 93 393 5 HOH HOH . 
D 4 HOH A 94 394 66 HOH HOH . 
D 4 HOH A 95 395 23 HOH HOH . 
D 4 HOH A 96 396 44 HOH HOH . 
D 4 HOH A 97 397 47 HOH HOH . 
D 4 HOH A 98 398 74 HOH HOH . 
D 4 HOH A 99 399 123 HOH HOH . 
D 4 HOH A 100 400 134 HOH HOH . 
D 4 HOH A 101 401 56 HOH HOH . 
D 4 HOH A 102 402 100 HOH HOH . 
D 4 HOH A 103 403 128 HOH HOH . 
D 4 HOH A 104 404 49 HOH HOH . 
D 4 HOH A 105 405 127 HOH HOH . 
D 4 HOH A 106 406 51 HOH HOH . 
D 4 HOH A 107 407 28 HOH HOH . 
D 4 HOH A 108 408 103 HOH HOH . 
D 4 HOH A 109 409 90 HOH HOH . 
D 4 HOH A 110 410 132 HOH HOH . 
D 4 HOH A 111 411 117 HOH HOH . 
D 4 HOH A 112 412 151 HOH HOH . 
D 4 HOH A 113 413 37 HOH HOH . 
D 4 HOH A 114 414 135 HOH HOH . 
D 4 HOH A 115 415 122 HOH HOH . 
D 4 HOH A 116 416 136 HOH HOH . 
D 4 HOH A 117 417 113 HOH HOH . 
D 4 HOH A 118 418 104 HOH HOH . 
D 4 HOH A 119 419 146 HOH HOH . 
D 4 HOH A 120 420 65 HOH HOH . 
D 4 HOH A 121 421 144 HOH HOH . 
D 4 HOH A 122 422 83 HOH HOH . 
D 4 HOH A 123 423 102 HOH HOH . 
D 4 HOH A 124 424 148 HOH HOH . 
D 4 HOH A 125 425 92 HOH HOH . 
D 4 HOH A 126 426 69 HOH HOH . 
D 4 HOH A 127 427 111 HOH HOH . 
D 4 HOH A 128 428 153 HOH HOH . 
D 4 HOH A 129 429 31 HOH HOH . 
D 4 HOH A 130 430 154 HOH HOH . 
D 4 HOH A 131 431 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GCP . . . B 2 -8.166 -42.173 20.975 0.94 15.08 ? PG GCP 201 A 1 
HETATM 2 O O1G GCP . . . B 2 -9.007 -43.361 20.326 0.81 13.05 ? O1G GCP 201 A 1 
HETATM 3 O O2G GCP . . . B 2 -9.136 -40.999 21.569 1 14.82 ? O2G GCP 201 A 1 
HETATM 4 O O3G GCP . . . B 2 -7.246 -42.779 22.163 0.98 16.39 -1 O3G GCP 201 A 1 
HETATM 5 C C3B GCP . . . B 2 -7.002 -41.459 19.755 1 12.49 ? C3B GCP 201 A 1 
HETATM 6 P PB GCP . . . B 2 -7.8 -40.643 18.312 0.97 11.6 ? PB GCP 201 A 1 
HETATM 7 O O1B GCP . . . B 2 -8.29 -41.631 17.296 0.95 11.43 ? O1B GCP 201 A 1 
HETATM 8 O O2B GCP . . . B 2 -8.861 -39.677 18.817 0.87 10.62 -1 O2B GCP 201 A 1 
HETATM 9 O O3A GCP . . . B 2 -6.626 -39.813 17.56 0.93 11.43 ? O3A GCP 201 A 1 
HETATM 10 P PA GCP . . . B 2 -6.215 -38.255 17.765 0.98 12.71 ? PA GCP 201 A 1 
HETATM 11 O O1A GCP . . . B 2 -5.91 -37.988 19.217 0.95 14.76 ? O1A GCP 201 A 1 
HETATM 12 O O2A GCP . . . B 2 -7.215 -37.42 17.151 1 12.08 -1 O2A GCP 201 A 1 
HETATM 13 O O5' GCP . . . B 2 -4.842 -38.171 16.855 1 13.3 ? O5' GCP 201 A 1 
HETATM 14 C C5' GCP . . . B 2 -3.779 -39.099 17.099 1 15.08 ? C5' GCP 201 A 1 
HETATM 15 C C4' GCP . . . B 2 -2.501 -38.496 16.351 1 14.07 ? C4' GCP 201 A 1 
HETATM 16 O O4' GCP . . . B 2 -2.68 -38.483 15.035 0.86 11.85 ? O4' GCP 201 A 1 
HETATM 17 C C3' GCP . . . B 2 -2.246 -36.969 16.868 0.97 16.63 ? C3' GCP 201 A 1 
HETATM 18 O O3' GCP . . . B 2 -0.865 -36.745 17.029 0.96 18.81 ? O3' GCP 201 A 1 
HETATM 19 C C2' GCP . . . B 2 -2.76 -36.221 15.924 0.89 12.87 ? C2' GCP 201 A 1 
HETATM 20 O O2' GCP . . . B 2 -2.28 -34.949 15.745 1 15.65 ? O2' GCP 201 A 1 
HETATM 21 C C1' GCP . . . B 2 -2.527 -37.024 14.62 1 13.47 ? C1' GCP 201 A 1 
HETATM 22 N N9 GCP . . . B 2 -3.47 -36.958 13.515 0.8 7.61 ? N9 GCP 201 A 1 
HETATM 23 C C8 GCP . . . B 2 -4.81 -37.044 13.593 0.84 10.06 ? C8 GCP 201 A 1 
HETATM 24 N N7 GCP . . . B 2 -5.332 -36.85 12.391 0.79 8.17 ? N7 GCP 201 A 1 
HETATM 25 C C5 GCP . . . B 2 -4.317 -36.58 11.531 0.81 8.41 ? C5 GCP 201 A 1 
HETATM 26 C C6 GCP . . . B 2 -4.227 -36.29 10.159 1 11.48 ? C6 GCP 201 A 1 
HETATM 27 O O6 GCP . . . B 2 -5.353 -36.231 9.411 0.88 9.43 -1 O6 GCP 201 A 1 
HETATM 28 N N1 GCP . . . B 2 -3.053 -36.067 9.62 0.8 7.48 ? N1 GCP 201 A 1 
HETATM 29 C C2 GCP . . . B 2 -1.942 -36.148 10.383 1 12.09 ? C2 GCP 201 A 1 
HETATM 30 N N2 GCP . . . B 2 -0.676 -35.909 9.705 1 14.31 ? N2 GCP 201 A 1 
HETATM 31 N N3 GCP . . . B 2 -1.946 -36.418 11.669 0.92 9.94 ? N3 GCP 201 A 1 
HETATM 32 C C4 GCP . . . B 2 -3.142 -36.635 12.263 0.95 8.36 ? C4 GCP 201 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#