data_7LZN
#
_model_server_result.job_id            NKNYwMKL3VMLRsb4pgz7FA 
_model_server_result.datetime_utc      '2024-11-15 08:37:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lzn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":204}' 
#
_entry.id    7LZN 
#
_exptl.entry_id    7LZN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7LZN 
_cell.length_a            59.602 
_cell.length_b            67.772 
_cell.length_c            67.554 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LZN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 142 n n 
C1 C2 GOL sing 143 n n 
C1 H11 GOL sing 144 n n 
C1 H12 GOL sing 145 n n 
O1 HO1 GOL sing 146 n n 
C2 O2 GOL sing 147 n n 
C2 C3 GOL sing 148 n n 
C2 H2 GOL sing 149 n n 
O2 HO2 GOL sing 150 n n 
C3 O3 GOL sing 151 n n 
C3 H31 GOL sing 152 n n 
C3 H32 GOL sing 153 n n 
O3 HO3 GOL sing 154 n n 
#
_atom_sites.entry_id                     7LZN 
_atom_sites.fract_transf_matrix[1][1]    0.016778 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014755 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014803 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 201 201 HEM HEM . 
D 3 SO4 A 1 202 202 SO4 SO4 . 
E 4 5JC A 1 203 203 5JC 5JC . 
F 5 GOL A 1 204 204 GOL GOL . 
G 2 HEM B 1 201 201 HEM HEM . 
H 3 SO4 B 1 202 202 SO4 SO4 . 
I 4 5JC B 1 203 203 5JC 5JC . 
J 6 HOH A 1 301 301 HOH HOH . 
J 6 HOH A 2 302 302 HOH HOH . 
J 6 HOH A 3 303 303 HOH HOH . 
J 6 HOH A 4 304 304 HOH HOH . 
J 6 HOH A 5 305 305 HOH HOH . 
J 6 HOH A 6 306 306 HOH HOH . 
J 6 HOH A 7 307 307 HOH HOH . 
J 6 HOH A 8 308 308 HOH HOH . 
J 6 HOH A 9 309 309 HOH HOH . 
J 6 HOH A 10 310 310 HOH HOH . 
J 6 HOH A 11 311 311 HOH HOH . 
J 6 HOH A 12 312 312 HOH HOH . 
J 6 HOH A 13 313 313 HOH HOH . 
J 6 HOH A 14 314 314 HOH HOH . 
J 6 HOH A 15 315 315 HOH HOH . 
J 6 HOH A 16 316 316 HOH HOH . 
J 6 HOH A 17 317 317 HOH HOH . 
J 6 HOH A 18 318 318 HOH HOH . 
J 6 HOH A 19 319 319 HOH HOH . 
J 6 HOH A 20 320 320 HOH HOH . 
J 6 HOH A 21 321 321 HOH HOH . 
J 6 HOH A 22 322 322 HOH HOH . 
J 6 HOH A 23 323 323 HOH HOH . 
J 6 HOH A 24 324 324 HOH HOH . 
J 6 HOH A 25 325 325 HOH HOH . 
J 6 HOH A 26 326 326 HOH HOH . 
J 6 HOH A 27 327 327 HOH HOH . 
J 6 HOH A 28 328 328 HOH HOH . 
J 6 HOH A 29 329 329 HOH HOH . 
J 6 HOH A 30 330 330 HOH HOH . 
J 6 HOH A 31 331 331 HOH HOH . 
J 6 HOH A 32 332 332 HOH HOH . 
J 6 HOH A 33 333 333 HOH HOH . 
J 6 HOH A 34 334 334 HOH HOH . 
J 6 HOH A 35 335 335 HOH HOH . 
J 6 HOH A 36 336 336 HOH HOH . 
J 6 HOH A 37 337 337 HOH HOH . 
J 6 HOH A 38 338 338 HOH HOH . 
J 6 HOH A 39 339 339 HOH HOH . 
J 6 HOH A 40 340 340 HOH HOH . 
J 6 HOH A 41 341 341 HOH HOH . 
J 6 HOH A 42 342 342 HOH HOH . 
J 6 HOH A 43 343 343 HOH HOH . 
J 6 HOH A 44 344 344 HOH HOH . 
J 6 HOH A 45 345 345 HOH HOH . 
J 6 HOH A 46 346 346 HOH HOH . 
J 6 HOH A 47 347 347 HOH HOH . 
J 6 HOH A 48 348 348 HOH HOH . 
J 6 HOH A 49 349 349 HOH HOH . 
J 6 HOH A 50 350 350 HOH HOH . 
J 6 HOH A 51 351 351 HOH HOH . 
J 6 HOH A 52 352 352 HOH HOH . 
J 6 HOH A 53 353 353 HOH HOH . 
J 6 HOH A 54 354 354 HOH HOH . 
J 6 HOH A 55 355 355 HOH HOH . 
J 6 HOH A 56 356 356 HOH HOH . 
J 6 HOH A 57 357 357 HOH HOH . 
J 6 HOH A 58 358 358 HOH HOH . 
J 6 HOH A 59 359 359 HOH HOH . 
J 6 HOH A 60 360 360 HOH HOH . 
J 6 HOH A 61 361 361 HOH HOH . 
J 6 HOH A 62 362 362 HOH HOH . 
J 6 HOH A 63 363 363 HOH HOH . 
J 6 HOH A 64 364 364 HOH HOH . 
J 6 HOH A 65 365 365 HOH HOH . 
K 6 HOH B 1 301 301 HOH HOH . 
K 6 HOH B 2 302 302 HOH HOH . 
K 6 HOH B 3 303 303 HOH HOH . 
K 6 HOH B 4 304 304 HOH HOH . 
K 6 HOH B 5 305 305 HOH HOH . 
K 6 HOH B 6 306 306 HOH HOH . 
K 6 HOH B 7 307 307 HOH HOH . 
K 6 HOH B 8 308 308 HOH HOH . 
K 6 HOH B 9 309 309 HOH HOH . 
K 6 HOH B 10 310 310 HOH HOH . 
K 6 HOH B 11 311 311 HOH HOH . 
K 6 HOH B 12 312 312 HOH HOH . 
K 6 HOH B 13 313 313 HOH HOH . 
K 6 HOH B 14 314 314 HOH HOH . 
K 6 HOH B 15 315 315 HOH HOH . 
K 6 HOH B 16 316 316 HOH HOH . 
K 6 HOH B 17 317 317 HOH HOH . 
K 6 HOH B 18 318 318 HOH HOH . 
K 6 HOH B 19 319 319 HOH HOH . 
K 6 HOH B 20 320 320 HOH HOH . 
K 6 HOH B 21 321 321 HOH HOH . 
K 6 HOH B 22 322 322 HOH HOH . 
K 6 HOH B 23 323 323 HOH HOH . 
K 6 HOH B 24 324 324 HOH HOH . 
K 6 HOH B 25 325 325 HOH HOH . 
K 6 HOH B 26 326 326 HOH HOH . 
K 6 HOH B 27 327 327 HOH HOH . 
K 6 HOH B 28 328 328 HOH HOH . 
K 6 HOH B 29 329 329 HOH HOH . 
K 6 HOH B 30 330 330 HOH HOH . 
K 6 HOH B 31 331 331 HOH HOH . 
K 6 HOH B 32 332 332 HOH HOH . 
K 6 HOH B 33 333 333 HOH HOH . 
K 6 HOH B 34 334 334 HOH HOH . 
K 6 HOH B 35 335 335 HOH HOH . 
K 6 HOH B 36 336 336 HOH HOH . 
K 6 HOH B 37 337 337 HOH HOH . 
K 6 HOH B 38 338 338 HOH HOH . 
K 6 HOH B 39 339 339 HOH HOH . 
K 6 HOH B 40 340 340 HOH HOH . 
K 6 HOH B 41 341 341 HOH HOH . 
K 6 HOH B 42 342 342 HOH HOH . 
K 6 HOH B 43 343 343 HOH HOH . 
K 6 HOH B 44 344 344 HOH HOH . 
K 6 HOH B 45 345 345 HOH HOH . 
K 6 HOH B 46 346 346 HOH HOH . 
K 6 HOH B 47 347 347 HOH HOH . 
K 6 HOH B 48 348 348 HOH HOH . 
K 6 HOH B 49 349 349 HOH HOH . 
K 6 HOH B 50 350 350 HOH HOH . 
K 6 HOH B 51 351 351 HOH HOH . 
K 6 HOH B 52 352 352 HOH HOH . 
K 6 HOH B 53 353 353 HOH HOH . 
K 6 HOH B 54 354 354 HOH HOH . 
K 6 HOH B 55 355 355 HOH HOH . 
K 6 HOH B 56 356 356 HOH HOH . 
K 6 HOH B 57 357 357 HOH HOH . 
K 6 HOH B 58 358 358 HOH HOH . 
K 6 HOH B 59 359 359 HOH HOH . 
K 6 HOH B 60 360 360 HOH HOH . 
K 6 HOH B 61 361 361 HOH HOH . 
K 6 HOH B 62 362 362 HOH HOH . 
K 6 HOH B 63 363 363 HOH HOH . 
K 6 HOH B 64 364 364 HOH HOH . 
K 6 HOH B 65 365 365 HOH HOH . 
K 6 HOH B 66 366 366 HOH HOH . 
K 6 HOH B 67 367 367 HOH HOH . 
K 6 HOH B 68 368 368 HOH HOH . 
K 6 HOH B 69 369 369 HOH HOH . 
K 6 HOH B 70 370 370 HOH HOH . 
K 6 HOH B 71 371 371 HOH HOH . 
K 6 HOH B 72 372 372 HOH HOH . 
K 6 HOH B 73 373 373 HOH HOH . 
K 6 HOH B 74 374 374 HOH HOH . 
K 6 HOH B 75 375 375 HOH HOH . 
K 6 HOH B 76 376 376 HOH HOH . 
K 6 HOH B 77 377 377 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 5 7.305 -4.077 10.838 1 55.24 ? C1 GOL 204 A 1 
HETATM 2 O O1 GOL . . . F 5 6.33 -3.542 9.974 1 37.58 ? O1 GOL 204 A 1 
HETATM 3 C C2 GOL . . . F 5 6.895 -3.884 12.308 1 53.48 ? C2 GOL 204 A 1 
HETATM 4 O O2 GOL . . . F 5 6.791 -2.503 12.564 1 54.2 ? O2 GOL 204 A 1 
HETATM 5 C C3 GOL . . . F 5 7.891 -4.468 13.323 1 49.51 ? C3 GOL 204 A 1 
HETATM 6 O O3 GOL . . . F 5 7.839 -5.875 13.369 1 32.34 ? O3 GOL 204 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#