data_7LZY # _model_server_result.job_id KsMNKmrveyMfVqmJPR0tiQ _model_server_result.datetime_utc '2024-11-08 09:35:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7lzy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7LZY # _exptl.entry_id 7LZY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 519.652 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.55 _cell.angle_gamma 90 _cell.entry_id 7LZY _cell.length_a 114.166 _cell.length_b 53.234 _cell.length_c 46.001 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LZY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 149 A CYS 145 1_555 B C14 YMJ . A YMJ 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.794 ? covale ? covale2 A SG CYS 149 A CYS 145 1_555 C C14 YMM . A YMM 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.812 ? # _chem_comp.formula 'C23 H41 N3 O8 S' _chem_comp.formula_weight 519.652 _chem_comp.id YMJ _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C11 YMJ doub 376 n n C11 N3 YMJ sing 377 n n C11 C10 YMJ sing 378 n n N3 C12 YMJ sing 379 n n C9 C10 YMJ sing 380 n n C9 C8 YMJ sing 381 n n C10 C13 YMJ sing 382 n n C14 C8 YMJ sing 383 n n C14 O3 YMJ sing 384 n n C12 C13 YMJ sing 385 n n C8 N2 YMJ sing 386 n n N2 C7 YMJ sing 387 n n O1 C1 YMJ doub 388 n n C7 C2 YMJ sing 389 n n C7 O4 YMJ doub 390 n n C5 C4 YMJ sing 391 n n C2 N1 YMJ sing 392 n n C2 C3 YMJ sing 393 n n C1 N1 YMJ sing 394 n n C1 O5 YMJ sing 395 n n C22 C23 YMJ sing 396 n n C22 C18 YMJ sing 397 n n C15 C23 YMJ sing 398 n n C15 O5 YMJ sing 399 n n C15 C16 YMJ sing 400 n n C19 C18 YMJ sing 401 n n C19 C20 YMJ sing 402 n n C17 C18 YMJ sing 403 n n C17 C16 YMJ sing 404 n n C3 C4 YMJ sing 405 n n C4 C6 YMJ sing 406 n n C21 C20 YMJ sing 407 n n C21 H1 YMJ sing 408 n n C21 H2 YMJ sing 409 n n C21 H3 YMJ sing 410 n n C14 S1 YMJ sing 411 n n C14 H5 YMJ sing 412 n n C13 H6 YMJ sing 413 n n C13 H7 YMJ sing 414 n n C12 H8 YMJ sing 415 n n C12 H9 YMJ sing 416 n n C16 H10 YMJ sing 417 n n C16 H11 YMJ sing 418 n n C15 H12 YMJ sing 419 n n C18 H13 YMJ sing 420 n n C19 H14 YMJ sing 421 n n C19 H15 YMJ sing 422 n n C10 H16 YMJ sing 423 n n C17 H17 YMJ sing 424 n n C17 H18 YMJ sing 425 n n C2 H19 YMJ sing 426 n n C20 H20 YMJ sing 427 n n C20 H21 YMJ sing 428 n n C22 H22 YMJ sing 429 n n C22 H23 YMJ sing 430 n n C23 H24 YMJ sing 431 n n C23 H25 YMJ sing 432 n n C3 H26 YMJ sing 433 n n C3 H27 YMJ sing 434 n n C4 H28 YMJ sing 435 n n C5 H29 YMJ sing 436 n n C5 H30 YMJ sing 437 n n C5 H31 YMJ sing 438 n n C6 H32 YMJ sing 439 n n C6 H33 YMJ sing 440 n n C6 H34 YMJ sing 441 n n C8 H35 YMJ sing 442 n n C9 H36 YMJ sing 443 n n C9 H37 YMJ sing 444 n n N1 H38 YMJ sing 445 n n N2 H39 YMJ sing 446 n n N3 H40 YMJ sing 447 n n O3 H41 YMJ sing 448 n n S1 O7 YMJ doub 449 n n S1 O6 YMJ doub 450 n n S1 O8 YMJ sing 451 n n O8 H4 YMJ sing 452 n n # _atom_sites.entry_id 7LZY _atom_sites.fract_transf_matrix[1][1] 0.008759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00195 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YMJ A 1 401 1 YMJ R59 . C 3 YMM A 1 402 2 YMM S59 . D 4 HOH A 1 501 81 HOH HOH . D 4 HOH A 2 502 70 HOH HOH . D 4 HOH A 3 503 89 HOH HOH . D 4 HOH A 4 504 32 HOH HOH . D 4 HOH A 5 505 13 HOH HOH . D 4 HOH A 6 506 61 HOH HOH . D 4 HOH A 7 507 9 HOH HOH . D 4 HOH A 8 508 77 HOH HOH . D 4 HOH A 9 509 34 HOH HOH . D 4 HOH A 10 510 5 HOH HOH . D 4 HOH A 11 511 136 HOH HOH . D 4 HOH A 12 512 87 HOH HOH . D 4 HOH A 13 513 52 HOH HOH . D 4 HOH A 14 514 8 HOH HOH . D 4 HOH A 15 515 42 HOH HOH . D 4 HOH A 16 516 83 HOH HOH . D 4 HOH A 17 517 57 HOH HOH . D 4 HOH A 18 518 106 HOH HOH . D 4 HOH A 19 519 49 HOH HOH . D 4 HOH A 20 520 36 HOH HOH . D 4 HOH A 21 521 58 HOH HOH . D 4 HOH A 22 522 117 HOH HOH . D 4 HOH A 23 523 71 HOH HOH . D 4 HOH A 24 524 66 HOH HOH . D 4 HOH A 25 525 128 HOH HOH . D 4 HOH A 26 526 2 HOH HOH . D 4 HOH A 27 527 1 HOH HOH . D 4 HOH A 28 528 19 HOH HOH . D 4 HOH A 29 529 103 HOH HOH . D 4 HOH A 30 530 118 HOH HOH . D 4 HOH A 31 531 72 HOH HOH . D 4 HOH A 32 532 25 HOH HOH . D 4 HOH A 33 533 111 HOH HOH . D 4 HOH A 34 534 20 HOH HOH . D 4 HOH A 35 535 125 HOH HOH . D 4 HOH A 36 536 68 HOH HOH . D 4 HOH A 37 537 11 HOH HOH . D 4 HOH A 38 538 53 HOH HOH . D 4 HOH A 39 539 45 HOH HOH . D 4 HOH A 40 540 130 HOH HOH . D 4 HOH A 41 541 48 HOH HOH . D 4 HOH A 42 542 30 HOH HOH . D 4 HOH A 43 543 102 HOH HOH . D 4 HOH A 44 544 110 HOH HOH . D 4 HOH A 45 545 62 HOH HOH . D 4 HOH A 46 546 94 HOH HOH . D 4 HOH A 47 547 35 HOH HOH . D 4 HOH A 48 548 37 HOH HOH . D 4 HOH A 49 549 14 HOH HOH . D 4 HOH A 50 550 4 HOH HOH . D 4 HOH A 51 551 69 HOH HOH . D 4 HOH A 52 552 38 HOH HOH . D 4 HOH A 53 553 47 HOH HOH . D 4 HOH A 54 554 105 HOH HOH . D 4 HOH A 55 555 63 HOH HOH . D 4 HOH A 56 556 24 HOH HOH . D 4 HOH A 57 557 127 HOH HOH . D 4 HOH A 58 558 115 HOH HOH . D 4 HOH A 59 559 10 HOH HOH . D 4 HOH A 60 560 17 HOH HOH . D 4 HOH A 61 561 82 HOH HOH . D 4 HOH A 62 562 40 HOH HOH . D 4 HOH A 63 563 3 HOH HOH . D 4 HOH A 64 564 124 HOH HOH . D 4 HOH A 65 565 16 HOH HOH . D 4 HOH A 66 566 135 HOH HOH . D 4 HOH A 67 567 54 HOH HOH . D 4 HOH A 68 568 76 HOH HOH . D 4 HOH A 69 569 85 HOH HOH . D 4 HOH A 70 570 74 HOH HOH . D 4 HOH A 71 571 98 HOH HOH . D 4 HOH A 72 572 51 HOH HOH . D 4 HOH A 73 573 29 HOH HOH . D 4 HOH A 74 574 22 HOH HOH . D 4 HOH A 75 575 101 HOH HOH . D 4 HOH A 76 576 107 HOH HOH . D 4 HOH A 77 577 113 HOH HOH . D 4 HOH A 78 578 39 HOH HOH . D 4 HOH A 79 579 27 HOH HOH . D 4 HOH A 80 580 6 HOH HOH . D 4 HOH A 81 581 12 HOH HOH . D 4 HOH A 82 582 55 HOH HOH . D 4 HOH A 83 583 133 HOH HOH . D 4 HOH A 84 584 15 HOH HOH . D 4 HOH A 85 585 114 HOH HOH . D 4 HOH A 86 586 84 HOH HOH . D 4 HOH A 87 587 60 HOH HOH . D 4 HOH A 88 588 129 HOH HOH . D 4 HOH A 89 589 41 HOH HOH . D 4 HOH A 90 590 108 HOH HOH . D 4 HOH A 91 591 33 HOH HOH . D 4 HOH A 92 592 90 HOH HOH . D 4 HOH A 93 593 121 HOH HOH . D 4 HOH A 94 594 46 HOH HOH . D 4 HOH A 95 595 79 HOH HOH . D 4 HOH A 96 596 75 HOH HOH . D 4 HOH A 97 597 80 HOH HOH . D 4 HOH A 98 598 104 HOH HOH . D 4 HOH A 99 599 26 HOH HOH . D 4 HOH A 100 600 78 HOH HOH . D 4 HOH A 101 601 86 HOH HOH . D 4 HOH A 102 602 99 HOH HOH . D 4 HOH A 103 603 43 HOH HOH . D 4 HOH A 104 604 18 HOH HOH . D 4 HOH A 105 605 23 HOH HOH . D 4 HOH A 106 606 28 HOH HOH . D 4 HOH A 107 607 31 HOH HOH . D 4 HOH A 108 608 109 HOH HOH . D 4 HOH A 109 609 88 HOH HOH . D 4 HOH A 110 610 126 HOH HOH . D 4 HOH A 111 611 131 HOH HOH . D 4 HOH A 112 612 64 HOH HOH . D 4 HOH A 113 613 92 HOH HOH . D 4 HOH A 114 614 95 HOH HOH . D 4 HOH A 115 615 44 HOH HOH . D 4 HOH A 116 616 97 HOH HOH . D 4 HOH A 117 617 50 HOH HOH . D 4 HOH A 118 618 123 HOH HOH . D 4 HOH A 119 619 119 HOH HOH . D 4 HOH A 120 620 112 HOH HOH . D 4 HOH A 121 621 67 HOH HOH . D 4 HOH A 122 622 7 HOH HOH . D 4 HOH A 123 623 59 HOH HOH . D 4 HOH A 124 624 21 HOH HOH . D 4 HOH A 125 625 91 HOH HOH . D 4 HOH A 126 626 100 HOH HOH . D 4 HOH A 127 627 56 HOH HOH . D 4 HOH A 128 628 65 HOH HOH . D 4 HOH A 129 629 73 HOH HOH . D 4 HOH A 130 630 96 HOH HOH . D 4 HOH A 131 631 137 HOH HOH . D 4 HOH A 132 632 122 HOH HOH . D 4 HOH A 133 633 120 HOH HOH . D 4 HOH A 134 634 132 HOH HOH . D 4 HOH A 135 635 116 HOH HOH . D 4 HOH A 136 636 93 HOH HOH . D 4 HOH A 137 637 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 YMJ . A . B 2 9.523 16.575 23.297 0.5 41.87 ? C21 YMJ 401 A 1 HETATM 2 C C14 YMJ . A . B 2 7.976 2.28 19.564 0.5 24.65 ? C14 YMJ 401 A 1 HETATM 3 C C13 YMJ . A . B 2 6.147 6.252 20.261 0.5 28.61 ? C13 YMJ 401 A 1 HETATM 4 C C12 YMJ . A . B 2 5.52 7.594 19.929 0.5 28.72 ? C12 YMJ 401 A 1 HETATM 5 C C16 YMJ . A . B 2 11.272 10.815 23.272 0.5 37.88 ? C16 YMJ 401 A 1 HETATM 6 C C15 YMJ . A . B 2 10.336 9.887 22.536 0.5 28.91 ? C15 YMJ 401 A 1 HETATM 7 C C11 YMJ . A . B 2 6.817 6.993 18.094 0.5 26.03 ? C11 YMJ 401 A 1 HETATM 8 C C18 YMJ . A . B 2 9.594 12.693 23.078 0.5 34.96 ? C18 YMJ 401 A 1 HETATM 9 C C19 YMJ . A . B 2 9.357 14.144 22.671 0.5 41.28 ? C19 YMJ 401 A 1 HETATM 10 C C1 YMJ . A . B 2 10.484 7.528 22.15 0.5 32.54 ? C1 YMJ 401 A 1 HETATM 11 C C10 YMJ . A . B 2 7.254 6.086 19.227 0.5 24.89 ? C10 YMJ 401 A 1 HETATM 12 C C17 YMJ . A . B 2 11.04 12.267 22.854 0.5 41.13 ? C17 YMJ 401 A 1 HETATM 13 C C2 YMJ . A . B 2 10.78 5.117 22.106 0.5 27.73 ? C2 YMJ 401 A 1 HETATM 14 C C20 YMJ . A . B 2 10.072 15.185 23.515 0.5 40.3 ? C20 YMJ 401 A 1 HETATM 15 C C22 YMJ . A . B 2 8.654 11.736 22.354 0.5 39.28 ? C22 YMJ 401 A 1 HETATM 16 C C23 YMJ . A . B 2 8.893 10.281 22.757 0.5 34.6 ? C23 YMJ 401 A 1 HETATM 17 C C3 YMJ . A . B 2 11.443 4.077 23.002 0.5 29.5 ? C3 YMJ 401 A 1 HETATM 18 C C4 YMJ . A . B 2 12.951 4.262 23.165 0.5 28.56 ? C4 YMJ 401 A 1 HETATM 19 C C5 YMJ . A . B 2 13.685 3.848 21.898 0.5 35.32 ? C5 YMJ 401 A 1 HETATM 20 C C6 YMJ . A . B 2 13.472 3.48 24.356 0.5 34.3 ? C6 YMJ 401 A 1 HETATM 21 C C7 YMJ . A . B 2 9.368 4.7 21.712 0.5 28.08 ? C7 YMJ 401 A 1 HETATM 22 C C8 YMJ . A . B 2 7.927 3.745 19.957 0.5 25.61 ? C8 YMJ 401 A 1 HETATM 23 C C9 YMJ . A . B 2 7.539 4.649 18.79 0.5 23.3 ? C9 YMJ 401 A 1 HETATM 24 N N1 YMJ . A . B 2 10.793 6.4 22.777 0.5 26.2 ? N1 YMJ 401 A 1 HETATM 25 N N2 YMJ . A . B 2 9.222 4.161 20.499 0.5 25.88 ? N2 YMJ 401 A 1 HETATM 26 N N3 YMJ . A . B 2 5.772 7.706 18.497 0.5 26.43 ? N3 YMJ 401 A 1 HETATM 27 O O1 YMJ . A . B 2 10.239 7.653 20.965 0.5 27.88 ? O1 YMJ 401 A 1 HETATM 28 O O2 YMJ . A . B 2 7.365 7.074 16.987 0.5 25.53 ? O2 YMJ 401 A 1 HETATM 29 O O3 YMJ . A . B 2 8.365 1.464 20.647 0.5 18.96 ? O3 YMJ 401 A 1 HETATM 30 O O4 YMJ . A . B 2 8.429 4.882 22.481 0.5 24.35 ? O4 YMJ 401 A 1 HETATM 31 O O5 YMJ . A . B 2 10.513 8.532 23.051 0.5 28.23 ? O5 YMJ 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #