data_7LZY
#
_model_server_result.job_id            9OqIotON4C4199BP8Da5uQ 
_model_server_result.datetime_utc      '2024-11-08 09:55:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lzy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    7LZY 
#
_exptl.entry_id    7LZY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              519.652 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.55 
_cell.angle_gamma         90 
_cell.entry_id            7LZY 
_cell.length_a            114.166 
_cell.length_b            53.234 
_cell.length_c            46.001 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LZY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 149 A CYS 145 1_555 B C14 YMJ . A YMJ 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.794 ? 
covale ? covale2 A SG CYS 149 A CYS 145 1_555 C C14 YMM . A YMM 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.812 ? 
#
_chem_comp.formula           'C23 H41 N3 O8 S' 
_chem_comp.formula_weight    519.652 
_chem_comp.id                YMM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C11 YMM doub 453 n n 
C11 N3 YMM sing 454 n n 
C11 C10 YMM sing 455 n n 
N3 C12 YMM sing 456 n n 
C9 C10 YMM sing 457 n n 
C9 C8 YMM sing 458 n n 
C10 C13 YMM sing 459 n n 
O3 C14 YMM sing 460 n n 
C14 C8 YMM sing 461 n n 
C12 C13 YMM sing 462 n n 
C8 N2 YMM sing 463 n n 
N2 C7 YMM sing 464 n n 
O1 C1 YMM doub 465 n n 
C7 C2 YMM sing 466 n n 
C7 O4 YMM doub 467 n n 
C5 C4 YMM sing 468 n n 
C2 N1 YMM sing 469 n n 
C2 C3 YMM sing 470 n n 
C1 N1 YMM sing 471 n n 
C1 O5 YMM sing 472 n n 
C22 C23 YMM sing 473 n n 
C22 C18 YMM sing 474 n n 
C15 C23 YMM sing 475 n n 
C15 O5 YMM sing 476 n n 
C15 C16 YMM sing 477 n n 
C19 C18 YMM sing 478 n n 
C19 C20 YMM sing 479 n n 
C17 C18 YMM sing 480 n n 
C17 C16 YMM sing 481 n n 
C3 C4 YMM sing 482 n n 
C4 C6 YMM sing 483 n n 
C21 C20 YMM sing 484 n n 
C10 H1 YMM sing 485 n n 
C12 H2 YMM sing 486 n n 
C12 H3 YMM sing 487 n n 
C13 H4 YMM sing 488 n n 
C13 H5 YMM sing 489 n n 
C14 S1 YMM sing 490 n n 
C14 H7 YMM sing 491 n n 
C15 H8 YMM sing 492 n n 
C16 H9 YMM sing 493 n n 
C16 H10 YMM sing 494 n n 
C17 H11 YMM sing 495 n n 
C17 H12 YMM sing 496 n n 
C18 H13 YMM sing 497 n n 
C19 H14 YMM sing 498 n n 
C19 H15 YMM sing 499 n n 
C2 H16 YMM sing 500 n n 
C20 H17 YMM sing 501 n n 
C20 H18 YMM sing 502 n n 
C21 H19 YMM sing 503 n n 
C21 H20 YMM sing 504 n n 
C21 H21 YMM sing 505 n n 
C22 H22 YMM sing 506 n n 
C22 H23 YMM sing 507 n n 
C23 H24 YMM sing 508 n n 
C23 H25 YMM sing 509 n n 
C3 H26 YMM sing 510 n n 
C3 H27 YMM sing 511 n n 
C4 H28 YMM sing 512 n n 
C5 H29 YMM sing 513 n n 
C5 H30 YMM sing 514 n n 
C5 H31 YMM sing 515 n n 
C6 H32 YMM sing 516 n n 
C6 H33 YMM sing 517 n n 
C6 H34 YMM sing 518 n n 
C8 H35 YMM sing 519 n n 
C9 H36 YMM sing 520 n n 
C9 H37 YMM sing 521 n n 
N1 H38 YMM sing 522 n n 
N2 H39 YMM sing 523 n n 
N3 H40 YMM sing 524 n n 
O3 H41 YMM sing 525 n n 
S1 O6 YMM doub 526 n n 
S1 O7 YMM doub 527 n n 
S1 O8 YMM sing 528 n n 
O8 H6 YMM sing 529 n n 
#
_atom_sites.entry_id                     7LZY 
_atom_sites.fract_transf_matrix[1][1]    0.008759 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00195 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018785 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022271 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 YMJ A 1 401 1 YMJ R59 . 
C 3 YMM A 1 402 2 YMM S59 . 
D 4 HOH A 1 501 81 HOH HOH . 
D 4 HOH A 2 502 70 HOH HOH . 
D 4 HOH A 3 503 89 HOH HOH . 
D 4 HOH A 4 504 32 HOH HOH . 
D 4 HOH A 5 505 13 HOH HOH . 
D 4 HOH A 6 506 61 HOH HOH . 
D 4 HOH A 7 507 9 HOH HOH . 
D 4 HOH A 8 508 77 HOH HOH . 
D 4 HOH A 9 509 34 HOH HOH . 
D 4 HOH A 10 510 5 HOH HOH . 
D 4 HOH A 11 511 136 HOH HOH . 
D 4 HOH A 12 512 87 HOH HOH . 
D 4 HOH A 13 513 52 HOH HOH . 
D 4 HOH A 14 514 8 HOH HOH . 
D 4 HOH A 15 515 42 HOH HOH . 
D 4 HOH A 16 516 83 HOH HOH . 
D 4 HOH A 17 517 57 HOH HOH . 
D 4 HOH A 18 518 106 HOH HOH . 
D 4 HOH A 19 519 49 HOH HOH . 
D 4 HOH A 20 520 36 HOH HOH . 
D 4 HOH A 21 521 58 HOH HOH . 
D 4 HOH A 22 522 117 HOH HOH . 
D 4 HOH A 23 523 71 HOH HOH . 
D 4 HOH A 24 524 66 HOH HOH . 
D 4 HOH A 25 525 128 HOH HOH . 
D 4 HOH A 26 526 2 HOH HOH . 
D 4 HOH A 27 527 1 HOH HOH . 
D 4 HOH A 28 528 19 HOH HOH . 
D 4 HOH A 29 529 103 HOH HOH . 
D 4 HOH A 30 530 118 HOH HOH . 
D 4 HOH A 31 531 72 HOH HOH . 
D 4 HOH A 32 532 25 HOH HOH . 
D 4 HOH A 33 533 111 HOH HOH . 
D 4 HOH A 34 534 20 HOH HOH . 
D 4 HOH A 35 535 125 HOH HOH . 
D 4 HOH A 36 536 68 HOH HOH . 
D 4 HOH A 37 537 11 HOH HOH . 
D 4 HOH A 38 538 53 HOH HOH . 
D 4 HOH A 39 539 45 HOH HOH . 
D 4 HOH A 40 540 130 HOH HOH . 
D 4 HOH A 41 541 48 HOH HOH . 
D 4 HOH A 42 542 30 HOH HOH . 
D 4 HOH A 43 543 102 HOH HOH . 
D 4 HOH A 44 544 110 HOH HOH . 
D 4 HOH A 45 545 62 HOH HOH . 
D 4 HOH A 46 546 94 HOH HOH . 
D 4 HOH A 47 547 35 HOH HOH . 
D 4 HOH A 48 548 37 HOH HOH . 
D 4 HOH A 49 549 14 HOH HOH . 
D 4 HOH A 50 550 4 HOH HOH . 
D 4 HOH A 51 551 69 HOH HOH . 
D 4 HOH A 52 552 38 HOH HOH . 
D 4 HOH A 53 553 47 HOH HOH . 
D 4 HOH A 54 554 105 HOH HOH . 
D 4 HOH A 55 555 63 HOH HOH . 
D 4 HOH A 56 556 24 HOH HOH . 
D 4 HOH A 57 557 127 HOH HOH . 
D 4 HOH A 58 558 115 HOH HOH . 
D 4 HOH A 59 559 10 HOH HOH . 
D 4 HOH A 60 560 17 HOH HOH . 
D 4 HOH A 61 561 82 HOH HOH . 
D 4 HOH A 62 562 40 HOH HOH . 
D 4 HOH A 63 563 3 HOH HOH . 
D 4 HOH A 64 564 124 HOH HOH . 
D 4 HOH A 65 565 16 HOH HOH . 
D 4 HOH A 66 566 135 HOH HOH . 
D 4 HOH A 67 567 54 HOH HOH . 
D 4 HOH A 68 568 76 HOH HOH . 
D 4 HOH A 69 569 85 HOH HOH . 
D 4 HOH A 70 570 74 HOH HOH . 
D 4 HOH A 71 571 98 HOH HOH . 
D 4 HOH A 72 572 51 HOH HOH . 
D 4 HOH A 73 573 29 HOH HOH . 
D 4 HOH A 74 574 22 HOH HOH . 
D 4 HOH A 75 575 101 HOH HOH . 
D 4 HOH A 76 576 107 HOH HOH . 
D 4 HOH A 77 577 113 HOH HOH . 
D 4 HOH A 78 578 39 HOH HOH . 
D 4 HOH A 79 579 27 HOH HOH . 
D 4 HOH A 80 580 6 HOH HOH . 
D 4 HOH A 81 581 12 HOH HOH . 
D 4 HOH A 82 582 55 HOH HOH . 
D 4 HOH A 83 583 133 HOH HOH . 
D 4 HOH A 84 584 15 HOH HOH . 
D 4 HOH A 85 585 114 HOH HOH . 
D 4 HOH A 86 586 84 HOH HOH . 
D 4 HOH A 87 587 60 HOH HOH . 
D 4 HOH A 88 588 129 HOH HOH . 
D 4 HOH A 89 589 41 HOH HOH . 
D 4 HOH A 90 590 108 HOH HOH . 
D 4 HOH A 91 591 33 HOH HOH . 
D 4 HOH A 92 592 90 HOH HOH . 
D 4 HOH A 93 593 121 HOH HOH . 
D 4 HOH A 94 594 46 HOH HOH . 
D 4 HOH A 95 595 79 HOH HOH . 
D 4 HOH A 96 596 75 HOH HOH . 
D 4 HOH A 97 597 80 HOH HOH . 
D 4 HOH A 98 598 104 HOH HOH . 
D 4 HOH A 99 599 26 HOH HOH . 
D 4 HOH A 100 600 78 HOH HOH . 
D 4 HOH A 101 601 86 HOH HOH . 
D 4 HOH A 102 602 99 HOH HOH . 
D 4 HOH A 103 603 43 HOH HOH . 
D 4 HOH A 104 604 18 HOH HOH . 
D 4 HOH A 105 605 23 HOH HOH . 
D 4 HOH A 106 606 28 HOH HOH . 
D 4 HOH A 107 607 31 HOH HOH . 
D 4 HOH A 108 608 109 HOH HOH . 
D 4 HOH A 109 609 88 HOH HOH . 
D 4 HOH A 110 610 126 HOH HOH . 
D 4 HOH A 111 611 131 HOH HOH . 
D 4 HOH A 112 612 64 HOH HOH . 
D 4 HOH A 113 613 92 HOH HOH . 
D 4 HOH A 114 614 95 HOH HOH . 
D 4 HOH A 115 615 44 HOH HOH . 
D 4 HOH A 116 616 97 HOH HOH . 
D 4 HOH A 117 617 50 HOH HOH . 
D 4 HOH A 118 618 123 HOH HOH . 
D 4 HOH A 119 619 119 HOH HOH . 
D 4 HOH A 120 620 112 HOH HOH . 
D 4 HOH A 121 621 67 HOH HOH . 
D 4 HOH A 122 622 7 HOH HOH . 
D 4 HOH A 123 623 59 HOH HOH . 
D 4 HOH A 124 624 21 HOH HOH . 
D 4 HOH A 125 625 91 HOH HOH . 
D 4 HOH A 126 626 100 HOH HOH . 
D 4 HOH A 127 627 56 HOH HOH . 
D 4 HOH A 128 628 65 HOH HOH . 
D 4 HOH A 129 629 73 HOH HOH . 
D 4 HOH A 130 630 96 HOH HOH . 
D 4 HOH A 131 631 137 HOH HOH . 
D 4 HOH A 132 632 122 HOH HOH . 
D 4 HOH A 133 633 120 HOH HOH . 
D 4 HOH A 134 634 132 HOH HOH . 
D 4 HOH A 135 635 116 HOH HOH . 
D 4 HOH A 136 636 93 HOH HOH . 
D 4 HOH A 137 637 134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 YMM . B . C 3 10.583 7.567 22.133 0.5 32.51 ? C1 YMM 402 A 1 
HETATM 2 C C10 YMM . B . C 3 7.198 6.127 19.073 0.5 24.73 ? C10 YMM 402 A 1 
HETATM 3 C C11 YMM . B . C 3 6.691 6.974 17.923 0.5 26.27 ? C11 YMM 402 A 1 
HETATM 4 C C12 YMM . B . C 3 5.506 7.655 19.809 0.5 28.76 ? C12 YMM 402 A 1 
HETATM 5 C C13 YMM . B . C 3 6.115 6.305 20.131 0.5 28.46 ? C13 YMM 402 A 1 
HETATM 6 C C14 YMM . B . C 3 8.026 2.367 19.614 0.5 24.62 ? C14 YMM 402 A 1 
HETATM 7 C C15 YMM . B . C 3 10.43 9.92 22.534 0.5 28.89 ? C15 YMM 402 A 1 
HETATM 8 C C16 YMM . B . C 3 11.332 10.847 23.315 0.5 37.96 ? C16 YMM 402 A 1 
HETATM 9 C C17 YMM . B . C 3 11.114 12.3 22.895 0.5 41.16 ? C17 YMM 402 A 1 
HETATM 10 C C18 YMM . B . C 3 9.658 12.722 23.06 0.5 35.01 ? C18 YMM 402 A 1 
HETATM 11 C C19 YMM . B . C 3 9.436 14.173 22.646 0.5 41.29 ? C19 YMM 402 A 1 
HETATM 12 C C2 YMM . B . C 3 10.813 5.147 22.085 0.5 27.75 ? C2 YMM 402 A 1 
HETATM 13 C C20 YMM . B . C 3 10.102 15.214 23.53 0.5 40.27 ? C20 YMM 402 A 1 
HETATM 14 C C21 YMM . B . C 3 9.531 16.595 23.315 0.5 41.88 ? C21 YMM 402 A 1 
HETATM 15 C C22 YMM . B . C 3 8.751 11.764 22.297 0.5 39.34 ? C22 YMM 402 A 1 
HETATM 16 C C23 YMM . B . C 3 8.979 10.308 22.705 0.5 34.58 ? C23 YMM 402 A 1 
HETATM 17 C C3 YMM . B . C 3 11.448 4.092 22.985 0.5 29.51 ? C3 YMM 402 A 1 
HETATM 18 C C4 YMM . B . C 3 12.957 4.249 23.164 0.5 28.57 ? C4 YMM 402 A 1 
HETATM 19 C C5 YMM . B . C 3 13.695 3.828 21.903 0.5 35.33 ? C5 YMM 402 A 1 
HETATM 20 C C6 YMM . B . C 3 13.451 3.451 24.356 0.5 34.29 ? C6 YMM 402 A 1 
HETATM 21 C C7 YMM . B . C 3 9.396 4.752 21.684 0.5 28.04 ? C7 YMM 402 A 1 
HETATM 22 C C8 YMM . B . C 3 7.943 3.854 19.912 0.5 25.59 ? C8 YMM 402 A 1 
HETATM 23 C C9 YMM . B . C 3 7.52 4.681 18.701 0.5 23.3 ? C9 YMM 402 A 1 
HETATM 24 N N1 YMM . B . C 3 10.849 6.428 22.761 0.5 26.27 ? N1 YMM 402 A 1 
HETATM 25 N N2 YMM . B . C 3 9.227 4.332 20.427 0.5 25.7 ? N2 YMM 402 A 1 
HETATM 26 N N3 YMM . B . C 3 5.692 7.734 18.364 0.5 26.11 ? N3 YMM 402 A 1 
HETATM 27 O O1 YMM . B . C 3 10.372 7.706 20.943 0.5 27.84 ? O1 YMM 402 A 1 
HETATM 28 O O2 YMM . B . C 3 7.148 6.973 16.77 0.5 25.87 ? O2 YMM 402 A 1 
HETATM 29 O O3 YMM . B . C 3 6.749 1.832 19.322 0.5 25.05 ? O3 YMM 402 A 1 
HETATM 30 O O4 YMM . B . C 3 8.477 4.835 22.492 0.5 24.37 ? O4 YMM 402 A 1 
HETATM 31 O O5 YMM . B . C 3 10.605 8.563 23.042 0.5 28.28 ? O5 YMM 402 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#