data_7LZZ
#
_model_server_result.job_id            MBt4u1goDbOfAQL-QD7rOw 
_model_server_result.datetime_utc      '2024-10-20 00:36:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lzz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7LZZ 
#
_exptl.entry_id    7LZZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              553.668 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1r,4S)-4-phenylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.55 
_cell.angle_gamma         90 
_cell.entry_id            7LZZ 
_cell.length_a            114.105 
_cell.length_b            53.102 
_cell.length_c            46.274 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LZZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 149 A CYS 145 1_555 B C19 YMS . A YMS 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.8 ? 
covale ? covale2 A SG CYS 149 A CYS 145 1_555 C C19 YMV . A YMV 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.809 ? 
#
_chem_comp.formula           'C26 H39 N3 O8 S' 
_chem_comp.formula_weight    553.668 
_chem_comp.id                YMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1r,4S)-4-phenylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O18 C14 YMS doub 376 n n 
C14 N15 YMS sing 377 n n 
C14 C13 YMS sing 378 n n 
N15 C16 YMS sing 379 n n 
C12 C13 YMS sing 380 n n 
C12 C11 YMS sing 381 n n 
C13 C17 YMS sing 382 n n 
C19 C11 YMS sing 383 n n 
C19 O20 YMS sing 384 n n 
C16 C17 YMS sing 385 n n 
C11 N10 YMS sing 386 n n 
N10 C09 YMS sing 387 n n 
O01 C02 YMS doub 388 n n 
C09 C04 YMS sing 389 n n 
C09 O21 YMS doub 390 n n 
C08 C06 YMS sing 391 n n 
C04 C05 YMS sing 392 n n 
C04 N03 YMS sing 393 n n 
C02 N03 YMS sing 394 n n 
C02 O22 YMS sing 395 n n 
C29 C28 YMS doub 396 n y 
C29 C30 YMS sing 397 n y 
C28 C27 YMS sing 398 n y 
C25 C24 YMS sing 399 n n 
C25 C26 YMS sing 400 n n 
C23 C24 YMS sing 401 n n 
C23 O22 YMS sing 402 n n 
C23 C34 YMS sing 403 n n 
C05 C06 YMS sing 404 n n 
C06 C07 YMS sing 405 n n 
C30 C31 YMS doub 406 n y 
C33 C34 YMS sing 407 n n 
C33 C26 YMS sing 408 n n 
C27 C26 YMS sing 409 n n 
C27 C32 YMS doub 410 n y 
C31 C32 YMS sing 411 n y 
C04 H1 YMS sing 412 n n 
C05 H2 YMS sing 413 n n 
C05 H3 YMS sing 414 n n 
C06 H4 YMS sing 415 n n 
C07 H5 YMS sing 416 n n 
C07 H6 YMS sing 417 n n 
C07 H7 YMS sing 418 n n 
C08 H8 YMS sing 419 n n 
C08 H9 YMS sing 420 n n 
C08 H10 YMS sing 421 n n 
C11 H11 YMS sing 422 n n 
C12 H12 YMS sing 423 n n 
C12 H13 YMS sing 424 n n 
C13 H14 YMS sing 425 n n 
C16 H15 YMS sing 426 n n 
C16 H16 YMS sing 427 n n 
C17 H17 YMS sing 428 n n 
C17 H18 YMS sing 429 n n 
C19 S1 YMS sing 430 n n 
C19 H20 YMS sing 431 n n 
C23 H21 YMS sing 432 n n 
C24 H22 YMS sing 433 n n 
C24 H23 YMS sing 434 n n 
C25 H24 YMS sing 435 n n 
C25 H25 YMS sing 436 n n 
C26 H26 YMS sing 437 n n 
C28 H27 YMS sing 438 n n 
C29 H28 YMS sing 439 n n 
C30 H29 YMS sing 440 n n 
C31 H30 YMS sing 441 n n 
C32 H31 YMS sing 442 n n 
C33 H32 YMS sing 443 n n 
C33 H33 YMS sing 444 n n 
C34 H34 YMS sing 445 n n 
C34 H35 YMS sing 446 n n 
N03 H36 YMS sing 447 n n 
N10 H37 YMS sing 448 n n 
N15 H38 YMS sing 449 n n 
O20 H39 YMS sing 450 n n 
S1 O1 YMS doub 451 n n 
S1 O2 YMS doub 452 n n 
S1 O3 YMS sing 453 n n 
O3 H19 YMS sing 454 n n 
#
_atom_sites.entry_id                     7LZZ 
_atom_sites.fract_transf_matrix[1][1]    0.008764 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00195 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022139 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 YMS A 1 401 1 YMS R57 . 
C 3 YMV A 1 402 2 YMV S57 . 
D 4 HOH A 1 501 92 HOH HOH . 
D 4 HOH A 2 502 64 HOH HOH . 
D 4 HOH A 3 503 116 HOH HOH . 
D 4 HOH A 4 504 25 HOH HOH . 
D 4 HOH A 5 505 110 HOH HOH . 
D 4 HOH A 6 506 22 HOH HOH . 
D 4 HOH A 7 507 124 HOH HOH . 
D 4 HOH A 8 508 109 HOH HOH . 
D 4 HOH A 9 509 122 HOH HOH . 
D 4 HOH A 10 510 35 HOH HOH . 
D 4 HOH A 11 511 73 HOH HOH . 
D 4 HOH A 12 512 88 HOH HOH . 
D 4 HOH A 13 513 23 HOH HOH . 
D 4 HOH A 14 514 30 HOH HOH . 
D 4 HOH A 15 515 85 HOH HOH . 
D 4 HOH A 16 516 27 HOH HOH . 
D 4 HOH A 17 517 106 HOH HOH . 
D 4 HOH A 18 518 14 HOH HOH . 
D 4 HOH A 19 519 84 HOH HOH . 
D 4 HOH A 20 520 15 HOH HOH . 
D 4 HOH A 21 521 107 HOH HOH . 
D 4 HOH A 22 522 47 HOH HOH . 
D 4 HOH A 23 523 2 HOH HOH . 
D 4 HOH A 24 524 83 HOH HOH . 
D 4 HOH A 25 525 54 HOH HOH . 
D 4 HOH A 26 526 28 HOH HOH . 
D 4 HOH A 27 527 17 HOH HOH . 
D 4 HOH A 28 528 59 HOH HOH . 
D 4 HOH A 29 529 52 HOH HOH . 
D 4 HOH A 30 530 6 HOH HOH . 
D 4 HOH A 31 531 53 HOH HOH . 
D 4 HOH A 32 532 8 HOH HOH . 
D 4 HOH A 33 533 94 HOH HOH . 
D 4 HOH A 34 534 71 HOH HOH . 
D 4 HOH A 35 535 20 HOH HOH . 
D 4 HOH A 36 536 58 HOH HOH . 
D 4 HOH A 37 537 1 HOH HOH . 
D 4 HOH A 38 538 115 HOH HOH . 
D 4 HOH A 39 539 113 HOH HOH . 
D 4 HOH A 40 540 10 HOH HOH . 
D 4 HOH A 41 541 100 HOH HOH . 
D 4 HOH A 42 542 111 HOH HOH . 
D 4 HOH A 43 543 67 HOH HOH . 
D 4 HOH A 44 544 13 HOH HOH . 
D 4 HOH A 45 545 95 HOH HOH . 
D 4 HOH A 46 546 61 HOH HOH . 
D 4 HOH A 47 547 97 HOH HOH . 
D 4 HOH A 48 548 19 HOH HOH . 
D 4 HOH A 49 549 5 HOH HOH . 
D 4 HOH A 50 550 9 HOH HOH . 
D 4 HOH A 51 551 42 HOH HOH . 
D 4 HOH A 52 552 118 HOH HOH . 
D 4 HOH A 53 553 66 HOH HOH . 
D 4 HOH A 54 554 99 HOH HOH . 
D 4 HOH A 55 555 45 HOH HOH . 
D 4 HOH A 56 556 81 HOH HOH . 
D 4 HOH A 57 557 18 HOH HOH . 
D 4 HOH A 58 558 51 HOH HOH . 
D 4 HOH A 59 559 4 HOH HOH . 
D 4 HOH A 60 560 117 HOH HOH . 
D 4 HOH A 61 561 33 HOH HOH . 
D 4 HOH A 62 562 74 HOH HOH . 
D 4 HOH A 63 563 68 HOH HOH . 
D 4 HOH A 64 564 46 HOH HOH . 
D 4 HOH A 65 565 89 HOH HOH . 
D 4 HOH A 66 566 12 HOH HOH . 
D 4 HOH A 67 567 69 HOH HOH . 
D 4 HOH A 68 568 65 HOH HOH . 
D 4 HOH A 69 569 91 HOH HOH . 
D 4 HOH A 70 570 76 HOH HOH . 
D 4 HOH A 71 571 108 HOH HOH . 
D 4 HOH A 72 572 86 HOH HOH . 
D 4 HOH A 73 573 98 HOH HOH . 
D 4 HOH A 74 574 63 HOH HOH . 
D 4 HOH A 75 575 34 HOH HOH . 
D 4 HOH A 76 576 104 HOH HOH . 
D 4 HOH A 77 577 129 HOH HOH . 
D 4 HOH A 78 578 72 HOH HOH . 
D 4 HOH A 79 579 11 HOH HOH . 
D 4 HOH A 80 580 49 HOH HOH . 
D 4 HOH A 81 581 29 HOH HOH . 
D 4 HOH A 82 582 80 HOH HOH . 
D 4 HOH A 83 583 44 HOH HOH . 
D 4 HOH A 84 584 127 HOH HOH . 
D 4 HOH A 85 585 70 HOH HOH . 
D 4 HOH A 86 586 38 HOH HOH . 
D 4 HOH A 87 587 90 HOH HOH . 
D 4 HOH A 88 588 43 HOH HOH . 
D 4 HOH A 89 589 79 HOH HOH . 
D 4 HOH A 90 590 50 HOH HOH . 
D 4 HOH A 91 591 130 HOH HOH . 
D 4 HOH A 92 592 16 HOH HOH . 
D 4 HOH A 93 593 41 HOH HOH . 
D 4 HOH A 94 594 39 HOH HOH . 
D 4 HOH A 95 595 40 HOH HOH . 
D 4 HOH A 96 596 7 HOH HOH . 
D 4 HOH A 97 597 114 HOH HOH . 
D 4 HOH A 98 598 26 HOH HOH . 
D 4 HOH A 99 599 82 HOH HOH . 
D 4 HOH A 100 600 101 HOH HOH . 
D 4 HOH A 101 601 32 HOH HOH . 
D 4 HOH A 102 602 56 HOH HOH . 
D 4 HOH A 103 603 3 HOH HOH . 
D 4 HOH A 104 604 48 HOH HOH . 
D 4 HOH A 105 605 93 HOH HOH . 
D 4 HOH A 106 606 55 HOH HOH . 
D 4 HOH A 107 607 77 HOH HOH . 
D 4 HOH A 108 608 24 HOH HOH . 
D 4 HOH A 109 609 62 HOH HOH . 
D 4 HOH A 110 610 105 HOH HOH . 
D 4 HOH A 111 611 112 HOH HOH . 
D 4 HOH A 112 612 57 HOH HOH . 
D 4 HOH A 113 613 120 HOH HOH . 
D 4 HOH A 114 614 126 HOH HOH . 
D 4 HOH A 115 615 36 HOH HOH . 
D 4 HOH A 116 616 125 HOH HOH . 
D 4 HOH A 117 617 103 HOH HOH . 
D 4 HOH A 118 618 87 HOH HOH . 
D 4 HOH A 119 619 75 HOH HOH . 
D 4 HOH A 120 620 121 HOH HOH . 
D 4 HOH A 121 621 78 HOH HOH . 
D 4 HOH A 122 622 21 HOH HOH . 
D 4 HOH A 123 623 60 HOH HOH . 
D 4 HOH A 124 624 96 HOH HOH . 
D 4 HOH A 125 625 31 HOH HOH . 
D 4 HOH A 126 626 123 HOH HOH . 
D 4 HOH A 127 627 119 HOH HOH . 
D 4 HOH A 128 628 128 HOH HOH . 
D 4 HOH A 129 629 102 HOH HOH . 
D 4 HOH A 130 630 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 YMS . A . B 2 10.383 7.547 22.255 0.5 33.83 ? C02 YMS 401 A 1 
HETATM 2 C C04 YMS . A . B 2 10.775 5.105 22.005 0.5 25.67 ? C04 YMS 401 A 1 
HETATM 3 C C05 YMS . A . B 2 11.462 3.996 22.79 0.5 27.49 ? C05 YMS 401 A 1 
HETATM 4 C C06 YMS . A . B 2 12.947 4.285 22.977 0.5 28.6 ? C06 YMS 401 A 1 
HETATM 5 C C07 YMS . A . B 2 13.53 3.449 24.113 0.5 33 ? C07 YMS 401 A 1 
HETATM 6 C C08 YMS . A . B 2 13.71 3.996 21.694 0.5 36.91 ? C08 YMS 401 A 1 
HETATM 7 C C09 YMS . A . B 2 9.383 4.662 21.599 0.5 30.9 ? C09 YMS 401 A 1 
HETATM 8 C C11 YMS . A . B 2 7.824 3.784 19.866 0.5 29.79 ? C11 YMS 401 A 1 
HETATM 9 C C12 YMS . A . B 2 7.35 4.65 18.705 0.5 24.52 ? C12 YMS 401 A 1 
HETATM 10 C C13 YMS . A . B 2 7.064 6.027 19.123 0.5 27.57 ? C13 YMS 401 A 1 
HETATM 11 C C14 YMS . A . B 2 6.582 6.884 17.87 0.5 30.52 ? C14 YMS 401 A 1 
HETATM 12 C C16 YMS . A . B 2 5.307 7.322 19.828 0.5 30.94 ? C16 YMS 401 A 1 
HETATM 13 C C17 YMS . A . B 2 5.871 6.088 20.055 0.5 33.23 ? C17 YMS 401 A 1 
HETATM 14 C C19 YMS . A . B 2 7.868 2.287 19.528 0.5 22.67 ? C19 YMS 401 A 1 
HETATM 15 C C23 YMS . A . B 2 9.932 9.876 22.617 0.5 27.11 ? C23 YMS 401 A 1 
HETATM 16 C C24 YMS . A . B 2 11.15 10.795 22.714 0.5 37.75 ? C24 YMS 401 A 1 
HETATM 17 C C25 YMS . A . B 2 10.791 12.269 22.5 0.5 43.76 ? C25 YMS 401 A 1 
HETATM 18 C C26 YMS . A . B 2 9.67 12.698 23.448 0.5 36.89 ? C26 YMS 401 A 1 
HETATM 19 C C27 YMS . A . B 2 9.34 14.198 23.298 0.5 47.15 ? C27 YMS 401 A 1 
HETATM 20 C C28 YMS . A . B 2 8.339 14.637 22.439 0.5 43.6 ? C28 YMS 401 A 1 
HETATM 21 C C29 YMS . A . B 2 8.051 15.99 22.33 0.5 44.1 ? C29 YMS 401 A 1 
HETATM 22 C C30 YMS . A . B 2 8.769 16.908 23.076 0.5 46.87 ? C30 YMS 401 A 1 
HETATM 23 C C31 YMS . A . B 2 9.766 16.476 23.937 0.5 47.62 ? C31 YMS 401 A 1 
HETATM 24 C C32 YMS . A . B 2 10.05 15.123 24.05 0.5 46.4 ? C32 YMS 401 A 1 
HETATM 25 C C33 YMS . A . B 2 8.43 11.837 23.178 0.5 42.58 ? C33 YMS 401 A 1 
HETATM 26 C C34 YMS . A . B 2 8.736 10.365 23.433 0.5 38.22 ? C34 YMS 401 A 1 
HETATM 27 N N03 YMS . A . B 2 10.652 6.261 22.847 0.5 27.8 ? N03 YMS 401 A 1 
HETATM 28 N N10 YMS . A . B 2 9.15 4.216 20.247 0.5 26.88 ? N10 YMS 401 A 1 
HETATM 29 N N15 YMS . A . B 2 5.543 7.631 18.3 0.5 28.52 ? N15 YMS 401 A 1 
HETATM 30 O O01 YMS . A . B 2 10.268 7.668 21.077 0.5 27.14 ? O01 YMS 401 A 1 
HETATM 31 O O18 YMS . A . B 2 7.045 6.857 16.784 0.5 31.07 ? O18 YMS 401 A 1 
HETATM 32 O O20 YMS . A . B 2 8.238 1.621 20.703 0.5 24.22 ? O20 YMS 401 A 1 
HETATM 33 O O21 YMS . A . B 2 8.5 4.698 22.383 0.5 27.75 ? O21 YMS 401 A 1 
HETATM 34 O O22 YMS . A . B 2 10.275 8.62 23.139 0.5 34.67 ? O22 YMS 401 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           34 
#