data_7LZZ
#
_model_server_result.job_id            4AYFsNqI6UM_hwsdR6LGgw 
_model_server_result.datetime_utc      '2024-10-20 00:51:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7lzz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    7LZZ 
#
_exptl.entry_id    7LZZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              553.668 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1r,4S)-4-phenylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.55 
_cell.angle_gamma         90 
_cell.entry_id            7LZZ 
_cell.length_a            114.105 
_cell.length_b            53.102 
_cell.length_c            46.274 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7LZZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 149 A CYS 145 1_555 B C19 YMS . A YMS 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.8 ? 
covale ? covale2 A SG CYS 149 A CYS 145 1_555 C C19 YMV . A YMV 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.809 ? 
#
_chem_comp.formula           'C26 H39 N3 O8 S' 
_chem_comp.formula_weight    553.668 
_chem_comp.id                YMV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1r,4S)-4-phenylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O18 C14 YMV doub 455 n n 
C14 N15 YMV sing 456 n n 
C14 C13 YMV sing 457 n n 
N15 C16 YMV sing 458 n n 
C12 C13 YMV sing 459 n n 
C12 C11 YMV sing 460 n n 
O20 C19 YMV sing 461 n n 
C13 C17 YMV sing 462 n n 
C19 C11 YMV sing 463 n n 
C16 C17 YMV sing 464 n n 
C11 N10 YMV sing 465 n n 
N10 C09 YMV sing 466 n n 
O01 C02 YMV doub 467 n n 
C09 C04 YMV sing 468 n n 
C09 O21 YMV doub 469 n n 
C08 C06 YMV sing 470 n n 
C04 C05 YMV sing 471 n n 
C04 N03 YMV sing 472 n n 
C02 N03 YMV sing 473 n n 
C02 O22 YMV sing 474 n n 
C29 C28 YMV doub 475 n y 
C29 C30 YMV sing 476 n y 
C28 C27 YMV sing 477 n y 
C25 C24 YMV sing 478 n n 
C25 C26 YMV sing 479 n n 
C23 C24 YMV sing 480 n n 
C23 O22 YMV sing 481 n n 
C23 C34 YMV sing 482 n n 
C05 C06 YMV sing 483 n n 
C06 C07 YMV sing 484 n n 
C33 C34 YMV sing 485 n n 
C33 C26 YMV sing 486 n n 
C30 C31 YMV doub 487 n y 
C27 C26 YMV sing 488 n n 
C27 C32 YMV doub 489 n y 
C31 C32 YMV sing 490 n y 
C04 H1 YMV sing 491 n n 
C05 H2 YMV sing 492 n n 
C05 H3 YMV sing 493 n n 
C06 H4 YMV sing 494 n n 
C07 H5 YMV sing 495 n n 
C07 H6 YMV sing 496 n n 
C07 H7 YMV sing 497 n n 
C08 H8 YMV sing 498 n n 
C08 H9 YMV sing 499 n n 
C08 H10 YMV sing 500 n n 
C11 H11 YMV sing 501 n n 
C12 H12 YMV sing 502 n n 
C12 H13 YMV sing 503 n n 
C13 H14 YMV sing 504 n n 
C16 H15 YMV sing 505 n n 
C16 H16 YMV sing 506 n n 
C17 H17 YMV sing 507 n n 
C17 H18 YMV sing 508 n n 
C19 S1 YMV sing 509 n n 
C19 H20 YMV sing 510 n n 
C23 H21 YMV sing 511 n n 
C24 H22 YMV sing 512 n n 
C24 H23 YMV sing 513 n n 
C25 H24 YMV sing 514 n n 
C25 H25 YMV sing 515 n n 
C26 H26 YMV sing 516 n n 
C28 H27 YMV sing 517 n n 
C29 H28 YMV sing 518 n n 
C30 H29 YMV sing 519 n n 
C31 H30 YMV sing 520 n n 
C32 H31 YMV sing 521 n n 
C33 H32 YMV sing 522 n n 
C33 H33 YMV sing 523 n n 
C34 H34 YMV sing 524 n n 
C34 H35 YMV sing 525 n n 
N03 H36 YMV sing 526 n n 
N10 H37 YMV sing 527 n n 
N15 H38 YMV sing 528 n n 
O20 H39 YMV sing 529 n n 
S1 O1 YMV doub 530 n n 
S1 O2 YMV doub 531 n n 
S1 O3 YMV sing 532 n n 
O3 H19 YMV sing 533 n n 
#
_atom_sites.entry_id                     7LZZ 
_atom_sites.fract_transf_matrix[1][1]    0.008764 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00195 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022139 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 YMS A 1 401 1 YMS R57 . 
C 3 YMV A 1 402 2 YMV S57 . 
D 4 HOH A 1 501 92 HOH HOH . 
D 4 HOH A 2 502 64 HOH HOH . 
D 4 HOH A 3 503 116 HOH HOH . 
D 4 HOH A 4 504 25 HOH HOH . 
D 4 HOH A 5 505 110 HOH HOH . 
D 4 HOH A 6 506 22 HOH HOH . 
D 4 HOH A 7 507 124 HOH HOH . 
D 4 HOH A 8 508 109 HOH HOH . 
D 4 HOH A 9 509 122 HOH HOH . 
D 4 HOH A 10 510 35 HOH HOH . 
D 4 HOH A 11 511 73 HOH HOH . 
D 4 HOH A 12 512 88 HOH HOH . 
D 4 HOH A 13 513 23 HOH HOH . 
D 4 HOH A 14 514 30 HOH HOH . 
D 4 HOH A 15 515 85 HOH HOH . 
D 4 HOH A 16 516 27 HOH HOH . 
D 4 HOH A 17 517 106 HOH HOH . 
D 4 HOH A 18 518 14 HOH HOH . 
D 4 HOH A 19 519 84 HOH HOH . 
D 4 HOH A 20 520 15 HOH HOH . 
D 4 HOH A 21 521 107 HOH HOH . 
D 4 HOH A 22 522 47 HOH HOH . 
D 4 HOH A 23 523 2 HOH HOH . 
D 4 HOH A 24 524 83 HOH HOH . 
D 4 HOH A 25 525 54 HOH HOH . 
D 4 HOH A 26 526 28 HOH HOH . 
D 4 HOH A 27 527 17 HOH HOH . 
D 4 HOH A 28 528 59 HOH HOH . 
D 4 HOH A 29 529 52 HOH HOH . 
D 4 HOH A 30 530 6 HOH HOH . 
D 4 HOH A 31 531 53 HOH HOH . 
D 4 HOH A 32 532 8 HOH HOH . 
D 4 HOH A 33 533 94 HOH HOH . 
D 4 HOH A 34 534 71 HOH HOH . 
D 4 HOH A 35 535 20 HOH HOH . 
D 4 HOH A 36 536 58 HOH HOH . 
D 4 HOH A 37 537 1 HOH HOH . 
D 4 HOH A 38 538 115 HOH HOH . 
D 4 HOH A 39 539 113 HOH HOH . 
D 4 HOH A 40 540 10 HOH HOH . 
D 4 HOH A 41 541 100 HOH HOH . 
D 4 HOH A 42 542 111 HOH HOH . 
D 4 HOH A 43 543 67 HOH HOH . 
D 4 HOH A 44 544 13 HOH HOH . 
D 4 HOH A 45 545 95 HOH HOH . 
D 4 HOH A 46 546 61 HOH HOH . 
D 4 HOH A 47 547 97 HOH HOH . 
D 4 HOH A 48 548 19 HOH HOH . 
D 4 HOH A 49 549 5 HOH HOH . 
D 4 HOH A 50 550 9 HOH HOH . 
D 4 HOH A 51 551 42 HOH HOH . 
D 4 HOH A 52 552 118 HOH HOH . 
D 4 HOH A 53 553 66 HOH HOH . 
D 4 HOH A 54 554 99 HOH HOH . 
D 4 HOH A 55 555 45 HOH HOH . 
D 4 HOH A 56 556 81 HOH HOH . 
D 4 HOH A 57 557 18 HOH HOH . 
D 4 HOH A 58 558 51 HOH HOH . 
D 4 HOH A 59 559 4 HOH HOH . 
D 4 HOH A 60 560 117 HOH HOH . 
D 4 HOH A 61 561 33 HOH HOH . 
D 4 HOH A 62 562 74 HOH HOH . 
D 4 HOH A 63 563 68 HOH HOH . 
D 4 HOH A 64 564 46 HOH HOH . 
D 4 HOH A 65 565 89 HOH HOH . 
D 4 HOH A 66 566 12 HOH HOH . 
D 4 HOH A 67 567 69 HOH HOH . 
D 4 HOH A 68 568 65 HOH HOH . 
D 4 HOH A 69 569 91 HOH HOH . 
D 4 HOH A 70 570 76 HOH HOH . 
D 4 HOH A 71 571 108 HOH HOH . 
D 4 HOH A 72 572 86 HOH HOH . 
D 4 HOH A 73 573 98 HOH HOH . 
D 4 HOH A 74 574 63 HOH HOH . 
D 4 HOH A 75 575 34 HOH HOH . 
D 4 HOH A 76 576 104 HOH HOH . 
D 4 HOH A 77 577 129 HOH HOH . 
D 4 HOH A 78 578 72 HOH HOH . 
D 4 HOH A 79 579 11 HOH HOH . 
D 4 HOH A 80 580 49 HOH HOH . 
D 4 HOH A 81 581 29 HOH HOH . 
D 4 HOH A 82 582 80 HOH HOH . 
D 4 HOH A 83 583 44 HOH HOH . 
D 4 HOH A 84 584 127 HOH HOH . 
D 4 HOH A 85 585 70 HOH HOH . 
D 4 HOH A 86 586 38 HOH HOH . 
D 4 HOH A 87 587 90 HOH HOH . 
D 4 HOH A 88 588 43 HOH HOH . 
D 4 HOH A 89 589 79 HOH HOH . 
D 4 HOH A 90 590 50 HOH HOH . 
D 4 HOH A 91 591 130 HOH HOH . 
D 4 HOH A 92 592 16 HOH HOH . 
D 4 HOH A 93 593 41 HOH HOH . 
D 4 HOH A 94 594 39 HOH HOH . 
D 4 HOH A 95 595 40 HOH HOH . 
D 4 HOH A 96 596 7 HOH HOH . 
D 4 HOH A 97 597 114 HOH HOH . 
D 4 HOH A 98 598 26 HOH HOH . 
D 4 HOH A 99 599 82 HOH HOH . 
D 4 HOH A 100 600 101 HOH HOH . 
D 4 HOH A 101 601 32 HOH HOH . 
D 4 HOH A 102 602 56 HOH HOH . 
D 4 HOH A 103 603 3 HOH HOH . 
D 4 HOH A 104 604 48 HOH HOH . 
D 4 HOH A 105 605 93 HOH HOH . 
D 4 HOH A 106 606 55 HOH HOH . 
D 4 HOH A 107 607 77 HOH HOH . 
D 4 HOH A 108 608 24 HOH HOH . 
D 4 HOH A 109 609 62 HOH HOH . 
D 4 HOH A 110 610 105 HOH HOH . 
D 4 HOH A 111 611 112 HOH HOH . 
D 4 HOH A 112 612 57 HOH HOH . 
D 4 HOH A 113 613 120 HOH HOH . 
D 4 HOH A 114 614 126 HOH HOH . 
D 4 HOH A 115 615 36 HOH HOH . 
D 4 HOH A 116 616 125 HOH HOH . 
D 4 HOH A 117 617 103 HOH HOH . 
D 4 HOH A 118 618 87 HOH HOH . 
D 4 HOH A 119 619 75 HOH HOH . 
D 4 HOH A 120 620 121 HOH HOH . 
D 4 HOH A 121 621 78 HOH HOH . 
D 4 HOH A 122 622 21 HOH HOH . 
D 4 HOH A 123 623 60 HOH HOH . 
D 4 HOH A 124 624 96 HOH HOH . 
D 4 HOH A 125 625 31 HOH HOH . 
D 4 HOH A 126 626 123 HOH HOH . 
D 4 HOH A 127 627 119 HOH HOH . 
D 4 HOH A 128 628 128 HOH HOH . 
D 4 HOH A 129 629 102 HOH HOH . 
D 4 HOH A 130 630 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 YMV . B . C 3 10.405 7.576 22.255 0.5 33.84 ? C02 YMV 402 A 1 
HETATM 2 C C04 YMV . B . C 3 10.814 5.133 22.031 0.5 25.68 ? C04 YMV 402 A 1 
HETATM 3 C C05 YMV . B . C 3 11.461 4.009 22.829 0.5 27.47 ? C05 YMV 402 A 1 
HETATM 4 C C06 YMV . B . C 3 12.943 4.29 23.059 0.5 28.66 ? C06 YMV 402 A 1 
HETATM 5 C C07 YMV . B . C 3 13.498 3.421 24.183 0.5 33 ? C07 YMV 402 A 1 
HETATM 6 C C08 YMV . B . C 3 13.739 4.046 21.787 0.5 36.81 ? C08 YMV 402 A 1 
HETATM 7 C C09 YMV . B . C 3 9.393 4.762 21.656 0.5 30.93 ? C09 YMV 402 A 1 
HETATM 8 C C11 YMV . B . C 3 7.851 3.618 20.049 0.5 30.04 ? C11 YMV 402 A 1 
HETATM 9 C C12 YMV . B . C 3 7.392 4.537 18.924 0.5 24.45 ? C12 YMV 402 A 1 
HETATM 10 C C13 YMV . B . C 3 7.168 5.912 19.373 0.5 28.47 ? C13 YMV 402 A 1 
HETATM 11 C C14 YMV . B . C 3 6.802 6.795 18.106 0.5 29.61 ? C14 YMV 402 A 1 
HETATM 12 C C16 YMV . B . C 3 5.423 7.272 19.983 0.5 30.86 ? C16 YMV 402 A 1 
HETATM 13 C C17 YMV . B . C 3 5.936 6.023 20.248 0.5 33.53 ? C17 YMV 402 A 1 
HETATM 14 C C19 YMV . B . C 3 7.92 2.15 19.618 0.5 22.8 ? C19 YMV 402 A 1 
HETATM 15 C C23 YMV . B . C 3 9.886 9.883 22.616 0.5 27.15 ? C23 YMV 402 A 1 
HETATM 16 C C24 YMV . B . C 3 11.129 10.766 22.738 0.5 37.7 ? C24 YMV 402 A 1 
HETATM 17 C C25 YMV . B . C 3 10.811 12.254 22.557 0.5 43.81 ? C25 YMV 402 A 1 
HETATM 18 C C26 YMV . B . C 3 9.692 12.689 23.504 0.5 36.88 ? C26 YMV 402 A 1 
HETATM 19 C C27 YMV . B . C 3 9.406 14.201 23.396 0.5 47.18 ? C27 YMV 402 A 1 
HETATM 20 C C28 YMV . B . C 3 8.424 14.688 22.541 0.5 43.57 ? C28 YMV 402 A 1 
HETATM 21 C C29 YMV . B . C 3 8.174 16.05 22.466 0.5 43.97 ? C29 YMV 402 A 1 
HETATM 22 C C30 YMV . B . C 3 8.909 16.929 23.244 0.5 47.07 ? C30 YMV 402 A 1 
HETATM 23 C C31 YMV . B . C 3 9.887 16.448 24.102 0.5 47.41 ? C31 YMV 402 A 1 
HETATM 24 C C32 YMV . B . C 3 10.134 15.085 24.18 0.5 46.29 ? C32 YMV 402 A 1 
HETATM 25 C C33 YMV . B . C 3 8.432 11.877 23.19 0.5 42.56 ? C33 YMV 402 A 1 
HETATM 26 C C34 YMV . B . C 3 8.685 10.392 23.413 0.5 38.26 ? C34 YMV 402 A 1 
HETATM 27 N N03 YMV . B . C 3 10.77 6.314 22.844 0.5 27.93 ? N03 YMV 402 A 1 
HETATM 28 N N10 YMV . B . C 3 9.184 4.003 20.45 0.5 27.48 ? N10 YMV 402 A 1 
HETATM 29 N N15 YMV . B . C 3 5.764 7.578 18.473 0.5 29.22 ? N15 YMV 402 A 1 
HETATM 30 O O01 YMV . B . C 3 10.313 7.702 21.076 0.5 27.15 ? O01 YMV 402 A 1 
HETATM 31 O O18 YMV . B . C 3 7.343 6.742 17.059 0.5 28.29 ? O18 YMV 402 A 1 
HETATM 32 O O20 YMV . B . C 3 6.654 1.68 19.237 0.5 25.14 ? O20 YMV 402 A 1 
HETATM 33 O O21 YMV . B . C 3 8.484 5.105 22.329 0.5 26.27 ? O21 YMV 402 A 1 
HETATM 34 O O22 YMV . B . C 3 10.178 8.619 23.147 0.5 34.65 ? O22 YMV 402 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#