data_7M03 # _model_server_result.job_id 5cBCbS6D8saiNI3sTzpgjw _model_server_result.datetime_utc '2024-10-20 00:34:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7M03 # _exptl.entry_id 7M03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 503.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.4 _cell.angle_gamma 90 _cell.entry_id 7M03 _cell.length_a 55.022 _cell.length_b 98.612 _cell.length_c 58.339 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 149 A CYS 145 1_555 C C19 YLD . A YLD 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.803 ? covale ? covale2 A SG CYS 149 A CYS 145 1_555 D C19 YLJ . A YLJ 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.812 ? covale ? covale3 B SG CYS 149 B CYS 145 1_555 E C19 YLJ . B YLJ 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.815 ? covale ? covale4 B SG CYS 149 B CYS 145 1_555 F C19 YLD . B YLD 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.804 ? # _chem_comp.formula 'C21 H30 F N3 O8 S' _chem_comp.formula_weight 503.542 _chem_comp.id YLD _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O18 C14 YLD doub 376 n n C29 C30 YLD doub 377 n y C29 C28 YLD sing 378 n y C30 C24 YLD sing 379 n y C28 C26 YLD doub 380 n y C24 C23 YLD sing 381 n n C24 C25 YLD doub 382 n y C23 O22 YLD sing 383 n n C14 N15 YLD sing 384 n n C14 C13 YLD sing 385 n n N15 C16 YLD sing 386 n n C26 C25 YLD sing 387 n y C26 F27 YLD sing 388 n n O01 C02 YLD doub 389 n n O22 C02 YLD sing 390 n n C13 C17 YLD sing 391 n n C13 C12 YLD sing 392 n n C02 N03 YLD sing 393 n n C16 C17 YLD sing 394 n n C08 C06 YLD sing 395 n n N03 C04 YLD sing 396 n n C12 C11 YLD sing 397 n n C04 C09 YLD sing 398 n n C04 C05 YLD sing 399 n n N10 C09 YLD sing 400 n n N10 C11 YLD sing 401 n n C09 O21 YLD doub 402 n n C06 C05 YLD sing 403 n n C06 C07 YLD sing 404 n n C11 C19 YLD sing 405 n n C19 O20 YLD sing 406 n n C11 H1 YLD sing 407 n n C12 H2 YLD sing 408 n n C12 H3 YLD sing 409 n n C13 H4 YLD sing 410 n n C04 H5 YLD sing 411 n n C05 H6 YLD sing 412 n n C05 H7 YLD sing 413 n n C06 H8 YLD sing 414 n n C07 H9 YLD sing 415 n n C07 H10 YLD sing 416 n n C07 H11 YLD sing 417 n n C08 H12 YLD sing 418 n n C08 H13 YLD sing 419 n n C08 H14 YLD sing 420 n n C16 H15 YLD sing 421 n n C16 H16 YLD sing 422 n n C17 H17 YLD sing 423 n n C17 H18 YLD sing 424 n n C19 S1 YLD sing 425 n n C19 H20 YLD sing 426 n n C23 H21 YLD sing 427 n n C23 H22 YLD sing 428 n n C25 H23 YLD sing 429 n n C28 H24 YLD sing 430 n n C29 H25 YLD sing 431 n n C30 H26 YLD sing 432 n n N03 H27 YLD sing 433 n n N10 H28 YLD sing 434 n n N15 H29 YLD sing 435 n n O20 H30 YLD sing 436 n n S1 O1 YLD doub 437 n n S1 O2 YLD doub 438 n n S1 O3 YLD sing 439 n n O3 H19 YLD sing 440 n n # _atom_sites.entry_id 7M03 _atom_sites.fract_transf_matrix[1][1] 0.018175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005697 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YLD A 1 401 1 YLD R29 . D 3 YLJ A 1 402 2 YLJ S29 . E 3 YLJ B 1 401 3 YLJ S29 . F 2 YLD B 1 402 4 YLD R29 . G 4 HOH A 1 501 73 HOH HOH . G 4 HOH A 2 502 79 HOH HOH . G 4 HOH A 3 503 50 HOH HOH . G 4 HOH A 4 504 93 HOH HOH . G 4 HOH A 5 505 94 HOH HOH . G 4 HOH A 6 506 62 HOH HOH . G 4 HOH A 7 507 55 HOH HOH . G 4 HOH A 8 508 54 HOH HOH . G 4 HOH A 9 509 104 HOH HOH . G 4 HOH A 10 510 3 HOH HOH . G 4 HOH A 11 511 91 HOH HOH . G 4 HOH A 12 512 57 HOH HOH . G 4 HOH A 13 513 35 HOH HOH . G 4 HOH A 14 514 32 HOH HOH . G 4 HOH A 15 515 47 HOH HOH . G 4 HOH A 16 516 89 HOH HOH . G 4 HOH A 17 517 6 HOH HOH . G 4 HOH A 18 518 27 HOH HOH . G 4 HOH A 19 519 51 HOH HOH . G 4 HOH A 20 520 102 HOH HOH . G 4 HOH A 21 521 71 HOH HOH . G 4 HOH A 22 522 45 HOH HOH . G 4 HOH A 23 523 43 HOH HOH . G 4 HOH A 24 524 90 HOH HOH . G 4 HOH A 25 525 64 HOH HOH . G 4 HOH A 26 526 13 HOH HOH . G 4 HOH A 27 527 44 HOH HOH . G 4 HOH A 28 528 2 HOH HOH . G 4 HOH A 29 529 30 HOH HOH . G 4 HOH A 30 530 100 HOH HOH . G 4 HOH A 31 531 84 HOH HOH . G 4 HOH A 32 532 68 HOH HOH . G 4 HOH A 33 533 61 HOH HOH . G 4 HOH A 34 534 29 HOH HOH . G 4 HOH A 35 535 15 HOH HOH . G 4 HOH A 36 536 22 HOH HOH . G 4 HOH A 37 537 60 HOH HOH . G 4 HOH A 38 538 87 HOH HOH . G 4 HOH A 39 539 34 HOH HOH . G 4 HOH A 40 540 56 HOH HOH . G 4 HOH A 41 541 41 HOH HOH . G 4 HOH A 42 542 81 HOH HOH . G 4 HOH A 43 543 12 HOH HOH . G 4 HOH A 44 544 16 HOH HOH . G 4 HOH A 45 545 52 HOH HOH . G 4 HOH A 46 546 18 HOH HOH . G 4 HOH A 47 547 92 HOH HOH . G 4 HOH A 48 548 59 HOH HOH . G 4 HOH A 49 549 77 HOH HOH . G 4 HOH A 50 550 65 HOH HOH . H 4 HOH B 1 501 101 HOH HOH . H 4 HOH B 2 502 98 HOH HOH . H 4 HOH B 3 503 25 HOH HOH . H 4 HOH B 4 504 72 HOH HOH . H 4 HOH B 5 505 20 HOH HOH . H 4 HOH B 6 506 99 HOH HOH . H 4 HOH B 7 507 103 HOH HOH . H 4 HOH B 8 508 4 HOH HOH . H 4 HOH B 9 509 36 HOH HOH . H 4 HOH B 10 510 21 HOH HOH . H 4 HOH B 11 511 7 HOH HOH . H 4 HOH B 12 512 58 HOH HOH . H 4 HOH B 13 513 19 HOH HOH . H 4 HOH B 14 514 88 HOH HOH . H 4 HOH B 15 515 70 HOH HOH . H 4 HOH B 16 516 26 HOH HOH . H 4 HOH B 17 517 23 HOH HOH . H 4 HOH B 18 518 96 HOH HOH . H 4 HOH B 19 519 9 HOH HOH . H 4 HOH B 20 520 46 HOH HOH . H 4 HOH B 21 521 40 HOH HOH . H 4 HOH B 22 522 5 HOH HOH . H 4 HOH B 23 523 76 HOH HOH . H 4 HOH B 24 524 78 HOH HOH . H 4 HOH B 25 525 95 HOH HOH . H 4 HOH B 26 526 66 HOH HOH . H 4 HOH B 27 527 53 HOH HOH . H 4 HOH B 28 528 42 HOH HOH . H 4 HOH B 29 529 31 HOH HOH . H 4 HOH B 30 530 48 HOH HOH . H 4 HOH B 31 531 86 HOH HOH . H 4 HOH B 32 532 17 HOH HOH . H 4 HOH B 33 533 49 HOH HOH . H 4 HOH B 34 534 24 HOH HOH . H 4 HOH B 35 535 8 HOH HOH . H 4 HOH B 36 536 1 HOH HOH . H 4 HOH B 37 537 97 HOH HOH . H 4 HOH B 38 538 39 HOH HOH . H 4 HOH B 39 539 83 HOH HOH . H 4 HOH B 40 540 28 HOH HOH . H 4 HOH B 41 541 11 HOH HOH . H 4 HOH B 42 542 75 HOH HOH . H 4 HOH B 43 543 74 HOH HOH . H 4 HOH B 44 544 80 HOH HOH . H 4 HOH B 45 545 67 HOH HOH . H 4 HOH B 46 546 33 HOH HOH . H 4 HOH B 47 547 105 HOH HOH . H 4 HOH B 48 548 37 HOH HOH . H 4 HOH B 49 549 10 HOH HOH . H 4 HOH B 50 550 63 HOH HOH . H 4 HOH B 51 551 69 HOH HOH . H 4 HOH B 52 552 82 HOH HOH . H 4 HOH B 53 553 14 HOH HOH . H 4 HOH B 54 554 85 HOH HOH . H 4 HOH B 55 555 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 YLD . A . C 2 8.936 19.753 27.802 0.5 40.5 ? C11 YLD 401 A 1 HETATM 2 C C12 YLD . A . C 2 7.761 19.75 26.721 0.5 40.86 ? C12 YLD 401 A 1 HETATM 3 C C13 YLD . A . C 2 7.647 20.999 25.799 0.5 40.48 ? C13 YLD 401 A 1 HETATM 4 C C14 YLD . A . C 2 6.597 20.987 24.644 0.5 39.33 ? C14 YLD 401 A 1 HETATM 5 C C02 YLD . A . C 2 10.8 23.943 25.849 0.5 51.22 ? C02 YLD 401 A 1 HETATM 6 C C04 YLD . A . C 2 12.16 22.148 27.026 0.5 43.43 ? C04 YLD 401 A 1 HETATM 7 C C05 YLD . A . C 2 13.23 21.917 28.102 0.5 40.88 ? C05 YLD 401 A 1 HETATM 8 C C06 YLD . A . C 2 14.68 22.305 27.724 0.5 43.69 ? C06 YLD 401 A 1 HETATM 9 C C07 YLD . A . C 2 15.708 22.14 28.898 0.5 42.76 ? C07 YLD 401 A 1 HETATM 10 C C08 YLD . A . C 2 15.106 21.533 26.464 0.5 42.43 ? C08 YLD 401 A 1 HETATM 11 C C09 YLD . A . C 2 10.799 21.557 27.578 0.5 46.73 ? C09 YLD 401 A 1 HETATM 12 C C16 YLD . A . C 2 5.708 22.473 26.278 0.5 43.6 ? C16 YLD 401 A 1 HETATM 13 C C17 YLD . A . C 2 7.195 22.208 26.631 0.5 39.89 ? C17 YLD 401 A 1 HETATM 14 C C19 YLD . A . C 2 9.256 18.338 28.341 0.5 35.88 ? C19 YLD 401 A 1 HETATM 15 C C23 YLD . A . C 2 11.445 25.954 24.569 0.5 56.85 ? C23 YLD 401 A 1 HETATM 16 C C24 YLD . A . C 2 11.461 27.533 24.527 0.5 59.92 ? C24 YLD 401 A 1 HETATM 17 C C25 YLD . A . C 2 12.441 28.256 25.194 0.5 63.57 ? C25 YLD 401 A 1 HETATM 18 C C26 YLD . A . C 2 12.472 29.679 25.165 0.5 60.52 ? C26 YLD 401 A 1 HETATM 19 C C28 YLD . A . C 2 11.484 30.397 24.448 0.5 58.66 ? C28 YLD 401 A 1 HETATM 20 C C29 YLD . A . C 2 10.484 29.683 23.767 0.5 63.5 ? C29 YLD 401 A 1 HETATM 21 C C30 YLD . A . C 2 10.485 28.277 23.813 0.5 64.41 ? C30 YLD 401 A 1 HETATM 22 F F27 YLD . A . C 2 13.403 30.324 25.8 0.5 63.36 ? F27 YLD 401 A 1 HETATM 23 N N03 YLD . A . C 2 11.943 23.558 26.631 0.5 43.69 ? N03 YLD 401 A 1 HETATM 24 N N10 YLD . A . C 2 10.223 20.329 27.261 0.5 37.87 ? N10 YLD 401 A 1 HETATM 25 N N15 YLD . A . C 2 5.5 21.862 24.967 0.5 42.94 ? N15 YLD 401 A 1 HETATM 26 O O01 YLD . A . C 2 10.034 23.152 25.423 0.5 44.05 ? O01 YLD 401 A 1 HETATM 27 O O18 YLD . A . C 2 6.721 20.348 23.665 0.5 33.9 ? O18 YLD 401 A 1 HETATM 28 O O20 YLD . A . C 2 10.129 18.443 29.444 0.5 47.47 ? O20 YLD 401 A 1 HETATM 29 O O21 YLD . A . C 2 10.205 22.315 28.363 0.5 44.15 ? O21 YLD 401 A 1 HETATM 30 O O22 YLD . A . C 2 10.604 25.332 25.573 0.5 53.94 ? O22 YLD 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #