data_7M03 # _model_server_result.job_id tVdo9TImna7GpO8OaUQiHg _model_server_result.datetime_utc '2024-10-20 00:23:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7M03 # _exptl.entry_id 7M03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 503.542 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '(1S,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.4 _cell.angle_gamma 90 _cell.entry_id 7M03 _cell.length_a 55.022 _cell.length_b 98.612 _cell.length_c 58.339 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 149 A CYS 145 1_555 C C19 YLD . A YLD 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.803 ? covale ? covale2 A SG CYS 149 A CYS 145 1_555 D C19 YLJ . A YLJ 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.812 ? covale ? covale3 B SG CYS 149 B CYS 145 1_555 E C19 YLJ . B YLJ 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.815 ? covale ? covale4 B SG CYS 149 B CYS 145 1_555 F C19 YLD . B YLD 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.804 ? # _chem_comp.formula 'C21 H30 F N3 O8 S' _chem_comp.formula_weight 503.542 _chem_comp.id YLJ _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O18 C14 YLJ doub 441 n n C29 C30 YLJ doub 442 n y C29 C28 YLJ sing 443 n y C30 C24 YLJ sing 444 n y C28 C26 YLJ doub 445 n y C24 C23 YLJ sing 446 n n C24 C25 YLJ doub 447 n y C23 O22 YLJ sing 448 n n C14 N15 YLJ sing 449 n n C14 C13 YLJ sing 450 n n N15 C16 YLJ sing 451 n n C26 C25 YLJ sing 452 n y C26 F27 YLJ sing 453 n n O01 C02 YLJ doub 454 n n O22 C02 YLJ sing 455 n n C13 C12 YLJ sing 456 n n C13 C17 YLJ sing 457 n n C02 N03 YLJ sing 458 n n C16 C17 YLJ sing 459 n n C08 C06 YLJ sing 460 n n N03 C04 YLJ sing 461 n n C12 C11 YLJ sing 462 n n C04 C09 YLJ sing 463 n n C04 C05 YLJ sing 464 n n N10 C09 YLJ sing 465 n n N10 C11 YLJ sing 466 n n C09 O21 YLJ doub 467 n n C06 C05 YLJ sing 468 n n C06 C07 YLJ sing 469 n n C11 C19 YLJ sing 470 n n C19 O20 YLJ sing 471 n n C11 H1 YLJ sing 472 n n C16 H2 YLJ sing 473 n n C17 H3 YLJ sing 474 n n C17 H4 YLJ sing 475 n n C23 H5 YLJ sing 476 n n C23 H6 YLJ sing 477 n n C29 H7 YLJ sing 478 n n C28 H8 YLJ sing 479 n n C25 H9 YLJ sing 480 n n C04 H10 YLJ sing 481 n n C05 H11 YLJ sing 482 n n C05 H12 YLJ sing 483 n n C06 H13 YLJ sing 484 n n C07 H14 YLJ sing 485 n n C07 H15 YLJ sing 486 n n C07 H16 YLJ sing 487 n n C08 H17 YLJ sing 488 n n C08 H18 YLJ sing 489 n n C08 H19 YLJ sing 490 n n C12 H20 YLJ sing 491 n n C12 H21 YLJ sing 492 n n C13 H22 YLJ sing 493 n n C19 H23 YLJ sing 494 n n C19 S1 YLJ sing 495 n n C30 H25 YLJ sing 496 n n N03 H26 YLJ sing 497 n n N10 H27 YLJ sing 498 n n O20 H28 YLJ sing 499 n n S1 O1 YLJ doub 500 n n S1 O2 YLJ doub 501 n n S1 O3 YLJ sing 502 n n C16 H24 YLJ sing 503 n n N15 H29 YLJ sing 504 n n O3 H30 YLJ sing 505 n n # _atom_sites.entry_id 7M03 _atom_sites.fract_transf_matrix[1][1] 0.018175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005697 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YLD A 1 401 1 YLD R29 . D 3 YLJ A 1 402 2 YLJ S29 . E 3 YLJ B 1 401 3 YLJ S29 . F 2 YLD B 1 402 4 YLD R29 . G 4 HOH A 1 501 73 HOH HOH . G 4 HOH A 2 502 79 HOH HOH . G 4 HOH A 3 503 50 HOH HOH . G 4 HOH A 4 504 93 HOH HOH . G 4 HOH A 5 505 94 HOH HOH . G 4 HOH A 6 506 62 HOH HOH . G 4 HOH A 7 507 55 HOH HOH . G 4 HOH A 8 508 54 HOH HOH . G 4 HOH A 9 509 104 HOH HOH . G 4 HOH A 10 510 3 HOH HOH . G 4 HOH A 11 511 91 HOH HOH . G 4 HOH A 12 512 57 HOH HOH . G 4 HOH A 13 513 35 HOH HOH . G 4 HOH A 14 514 32 HOH HOH . G 4 HOH A 15 515 47 HOH HOH . G 4 HOH A 16 516 89 HOH HOH . G 4 HOH A 17 517 6 HOH HOH . G 4 HOH A 18 518 27 HOH HOH . G 4 HOH A 19 519 51 HOH HOH . G 4 HOH A 20 520 102 HOH HOH . G 4 HOH A 21 521 71 HOH HOH . G 4 HOH A 22 522 45 HOH HOH . G 4 HOH A 23 523 43 HOH HOH . G 4 HOH A 24 524 90 HOH HOH . G 4 HOH A 25 525 64 HOH HOH . G 4 HOH A 26 526 13 HOH HOH . G 4 HOH A 27 527 44 HOH HOH . G 4 HOH A 28 528 2 HOH HOH . G 4 HOH A 29 529 30 HOH HOH . G 4 HOH A 30 530 100 HOH HOH . G 4 HOH A 31 531 84 HOH HOH . G 4 HOH A 32 532 68 HOH HOH . G 4 HOH A 33 533 61 HOH HOH . G 4 HOH A 34 534 29 HOH HOH . G 4 HOH A 35 535 15 HOH HOH . G 4 HOH A 36 536 22 HOH HOH . G 4 HOH A 37 537 60 HOH HOH . G 4 HOH A 38 538 87 HOH HOH . G 4 HOH A 39 539 34 HOH HOH . G 4 HOH A 40 540 56 HOH HOH . G 4 HOH A 41 541 41 HOH HOH . G 4 HOH A 42 542 81 HOH HOH . G 4 HOH A 43 543 12 HOH HOH . G 4 HOH A 44 544 16 HOH HOH . G 4 HOH A 45 545 52 HOH HOH . G 4 HOH A 46 546 18 HOH HOH . G 4 HOH A 47 547 92 HOH HOH . G 4 HOH A 48 548 59 HOH HOH . G 4 HOH A 49 549 77 HOH HOH . G 4 HOH A 50 550 65 HOH HOH . H 4 HOH B 1 501 101 HOH HOH . H 4 HOH B 2 502 98 HOH HOH . H 4 HOH B 3 503 25 HOH HOH . H 4 HOH B 4 504 72 HOH HOH . H 4 HOH B 5 505 20 HOH HOH . H 4 HOH B 6 506 99 HOH HOH . H 4 HOH B 7 507 103 HOH HOH . H 4 HOH B 8 508 4 HOH HOH . H 4 HOH B 9 509 36 HOH HOH . H 4 HOH B 10 510 21 HOH HOH . H 4 HOH B 11 511 7 HOH HOH . H 4 HOH B 12 512 58 HOH HOH . H 4 HOH B 13 513 19 HOH HOH . H 4 HOH B 14 514 88 HOH HOH . H 4 HOH B 15 515 70 HOH HOH . H 4 HOH B 16 516 26 HOH HOH . H 4 HOH B 17 517 23 HOH HOH . H 4 HOH B 18 518 96 HOH HOH . H 4 HOH B 19 519 9 HOH HOH . H 4 HOH B 20 520 46 HOH HOH . H 4 HOH B 21 521 40 HOH HOH . H 4 HOH B 22 522 5 HOH HOH . H 4 HOH B 23 523 76 HOH HOH . H 4 HOH B 24 524 78 HOH HOH . H 4 HOH B 25 525 95 HOH HOH . H 4 HOH B 26 526 66 HOH HOH . H 4 HOH B 27 527 53 HOH HOH . H 4 HOH B 28 528 42 HOH HOH . H 4 HOH B 29 529 31 HOH HOH . H 4 HOH B 30 530 48 HOH HOH . H 4 HOH B 31 531 86 HOH HOH . H 4 HOH B 32 532 17 HOH HOH . H 4 HOH B 33 533 49 HOH HOH . H 4 HOH B 34 534 24 HOH HOH . H 4 HOH B 35 535 8 HOH HOH . H 4 HOH B 36 536 1 HOH HOH . H 4 HOH B 37 537 97 HOH HOH . H 4 HOH B 38 538 39 HOH HOH . H 4 HOH B 39 539 83 HOH HOH . H 4 HOH B 40 540 28 HOH HOH . H 4 HOH B 41 541 11 HOH HOH . H 4 HOH B 42 542 75 HOH HOH . H 4 HOH B 43 543 74 HOH HOH . H 4 HOH B 44 544 80 HOH HOH . H 4 HOH B 45 545 67 HOH HOH . H 4 HOH B 46 546 33 HOH HOH . H 4 HOH B 47 547 105 HOH HOH . H 4 HOH B 48 548 37 HOH HOH . H 4 HOH B 49 549 10 HOH HOH . H 4 HOH B 50 550 63 HOH HOH . H 4 HOH B 51 551 69 HOH HOH . H 4 HOH B 52 552 82 HOH HOH . H 4 HOH B 53 553 14 HOH HOH . H 4 HOH B 54 554 85 HOH HOH . H 4 HOH B 55 555 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 YLJ . B . D 3 8.945 19.789 27.756 0.5 40.49 ? C11 YLJ 402 A 1 HETATM 2 C C16 YLJ . B . D 3 5.625 22.64 26.202 0.5 43.5 ? C16 YLJ 402 A 1 HETATM 3 C C17 YLJ . B . D 3 7.007 22.19 26.768 0.5 40.04 ? C17 YLJ 402 A 1 HETATM 4 O O18 YLJ . B . D 3 6.704 20.402 23.704 0.5 33.96 ? O18 YLJ 402 A 1 HETATM 5 C C23 YLJ . B . D 3 11.447 25.957 24.568 0.5 56.86 ? C23 YLJ 402 A 1 HETATM 6 C C24 YLJ . B . D 3 11.462 27.536 24.527 0.5 59.92 ? C24 YLJ 402 A 1 HETATM 7 C C29 YLJ . B . D 3 10.485 29.685 23.768 0.5 63.5 ? C29 YLJ 402 A 1 HETATM 8 C C28 YLJ . B . D 3 11.485 30.4 24.449 0.5 58.66 ? C28 YLJ 402 A 1 HETATM 9 C C26 YLJ . B . D 3 12.473 29.681 25.166 0.5 60.52 ? C26 YLJ 402 A 1 HETATM 10 C C25 YLJ . B . D 3 12.442 28.258 25.195 0.5 63.57 ? C25 YLJ 402 A 1 HETATM 11 C C02 YLJ . B . D 3 10.814 23.948 25.854 0.5 51.22 ? C02 YLJ 402 A 1 HETATM 12 C C04 YLJ . B . D 3 12.184 22.156 27.025 0.5 43.42 ? C04 YLJ 402 A 1 HETATM 13 C C05 YLJ . B . D 3 13.241 21.929 28.114 0.5 40.88 ? C05 YLJ 402 A 1 HETATM 14 C C06 YLJ . B . D 3 14.695 22.306 27.741 0.5 43.7 ? C06 YLJ 402 A 1 HETATM 15 C C07 YLJ . B . D 3 15.722 22.12 28.913 0.5 42.74 ? C07 YLJ 402 A 1 HETATM 16 C C08 YLJ . B . D 3 15.113 21.543 26.474 0.5 42.42 ? C08 YLJ 402 A 1 HETATM 17 C C09 YLJ . B . D 3 10.82 21.569 27.559 0.5 46.73 ? C09 YLJ 402 A 1 HETATM 18 C C12 YLJ . B . D 3 7.781 19.786 26.661 0.5 40.84 ? C12 YLJ 402 A 1 HETATM 19 C C13 YLJ . B . D 3 7.568 21.098 25.844 0.5 40.35 ? C13 YLJ 402 A 1 HETATM 20 C C14 YLJ . B . D 3 6.557 21.075 24.658 0.5 39.37 ? C14 YLJ 402 A 1 HETATM 21 C C19 YLJ . B . D 3 9.22 18.372 28.306 0.5 35.85 ? C19 YLJ 402 A 1 HETATM 22 C C30 YLJ . B . D 3 10.486 28.28 23.814 0.5 64.41 ? C30 YLJ 402 A 1 HETATM 23 F F27 YLJ . B . D 3 13.404 30.326 25.801 0.5 63.36 ? F27 YLJ 402 A 1 HETATM 24 N N03 YLJ . B . D 3 11.967 23.564 26.625 0.5 43.68 ? N03 YLJ 402 A 1 HETATM 25 N N10 YLJ . B . D 3 10.239 20.348 27.229 0.5 37.85 ? N10 YLJ 402 A 1 HETATM 26 N N15 YLJ . B . D 3 5.47 21.985 24.905 0.5 42.99 ? N15 YLJ 402 A 1 HETATM 27 O O01 YLJ . B . D 3 10.044 23.157 25.436 0.5 44.04 ? O01 YLJ 402 A 1 HETATM 28 O O20 YLJ . B . D 3 7.999 17.756 28.634 0.5 32.08 ? O20 YLJ 402 A 1 HETATM 29 O O21 YLJ . B . D 3 10.221 22.327 28.341 0.5 44.14 ? O21 YLJ 402 A 1 HETATM 30 O O22 YLJ . B . D 3 10.616 25.336 25.579 0.5 53.93 ? O22 YLJ 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #