data_7M03
#
_model_server_result.job_id            ARx8l4U7RRsdqs5pZR2atw 
_model_server_result.datetime_utc      '2024-11-21 08:59:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m03 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    7M03 
#
_exptl.entry_id    7M03 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              503.542 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.4 
_cell.angle_gamma         90 
_cell.entry_id            7M03 
_cell.length_a            55.022 
_cell.length_b            98.612 
_cell.length_c            58.339 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7M03 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 149 A CYS 145 1_555 C C19 YLD . A YLD 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.803 ? 
covale ? covale2 A SG CYS 149 A CYS 145 1_555 D C19 YLJ . A YLJ 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.812 ? 
covale ? covale3 B SG CYS 149 B CYS 145 1_555 E C19 YLJ . B YLJ 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.815 ? 
covale ? covale4 B SG CYS 149 B CYS 145 1_555 F C19 YLD . B YLD 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.804 ? 
#
_chem_comp.formula           'C21 H30 F N3 O8 S' 
_chem_comp.formula_weight    503.542 
_chem_comp.id                YLD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O18 C14 YLD doub 376 n n 
C29 C30 YLD doub 377 n y 
C29 C28 YLD sing 378 n y 
C30 C24 YLD sing 379 n y 
C28 C26 YLD doub 380 n y 
C24 C23 YLD sing 381 n n 
C24 C25 YLD doub 382 n y 
C23 O22 YLD sing 383 n n 
C14 N15 YLD sing 384 n n 
C14 C13 YLD sing 385 n n 
N15 C16 YLD sing 386 n n 
C26 C25 YLD sing 387 n y 
C26 F27 YLD sing 388 n n 
O01 C02 YLD doub 389 n n 
O22 C02 YLD sing 390 n n 
C13 C17 YLD sing 391 n n 
C13 C12 YLD sing 392 n n 
C02 N03 YLD sing 393 n n 
C16 C17 YLD sing 394 n n 
C08 C06 YLD sing 395 n n 
N03 C04 YLD sing 396 n n 
C12 C11 YLD sing 397 n n 
C04 C09 YLD sing 398 n n 
C04 C05 YLD sing 399 n n 
N10 C09 YLD sing 400 n n 
N10 C11 YLD sing 401 n n 
C09 O21 YLD doub 402 n n 
C06 C05 YLD sing 403 n n 
C06 C07 YLD sing 404 n n 
C11 C19 YLD sing 405 n n 
C19 O20 YLD sing 406 n n 
C11 H1 YLD sing 407 n n 
C12 H2 YLD sing 408 n n 
C12 H3 YLD sing 409 n n 
C13 H4 YLD sing 410 n n 
C04 H5 YLD sing 411 n n 
C05 H6 YLD sing 412 n n 
C05 H7 YLD sing 413 n n 
C06 H8 YLD sing 414 n n 
C07 H9 YLD sing 415 n n 
C07 H10 YLD sing 416 n n 
C07 H11 YLD sing 417 n n 
C08 H12 YLD sing 418 n n 
C08 H13 YLD sing 419 n n 
C08 H14 YLD sing 420 n n 
C16 H15 YLD sing 421 n n 
C16 H16 YLD sing 422 n n 
C17 H17 YLD sing 423 n n 
C17 H18 YLD sing 424 n n 
C19 S1 YLD sing 425 n n 
C19 H20 YLD sing 426 n n 
C23 H21 YLD sing 427 n n 
C23 H22 YLD sing 428 n n 
C25 H23 YLD sing 429 n n 
C28 H24 YLD sing 430 n n 
C29 H25 YLD sing 431 n n 
C30 H26 YLD sing 432 n n 
N03 H27 YLD sing 433 n n 
N10 H28 YLD sing 434 n n 
N15 H29 YLD sing 435 n n 
O20 H30 YLD sing 436 n n 
S1 O1 YLD doub 437 n n 
S1 O2 YLD doub 438 n n 
S1 O3 YLD sing 439 n n 
O3 H19 YLD sing 440 n n 
#
_atom_sites.entry_id                     7M03 
_atom_sites.fract_transf_matrix[1][1]    0.018175 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005697 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010141 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017963 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YLD A 1 401 1 YLD R29 . 
D 3 YLJ A 1 402 2 YLJ S29 . 
E 3 YLJ B 1 401 3 YLJ S29 . 
F 2 YLD B 1 402 4 YLD R29 . 
G 4 HOH A 1 501 73 HOH HOH . 
G 4 HOH A 2 502 79 HOH HOH . 
G 4 HOH A 3 503 50 HOH HOH . 
G 4 HOH A 4 504 93 HOH HOH . 
G 4 HOH A 5 505 94 HOH HOH . 
G 4 HOH A 6 506 62 HOH HOH . 
G 4 HOH A 7 507 55 HOH HOH . 
G 4 HOH A 8 508 54 HOH HOH . 
G 4 HOH A 9 509 104 HOH HOH . 
G 4 HOH A 10 510 3 HOH HOH . 
G 4 HOH A 11 511 91 HOH HOH . 
G 4 HOH A 12 512 57 HOH HOH . 
G 4 HOH A 13 513 35 HOH HOH . 
G 4 HOH A 14 514 32 HOH HOH . 
G 4 HOH A 15 515 47 HOH HOH . 
G 4 HOH A 16 516 89 HOH HOH . 
G 4 HOH A 17 517 6 HOH HOH . 
G 4 HOH A 18 518 27 HOH HOH . 
G 4 HOH A 19 519 51 HOH HOH . 
G 4 HOH A 20 520 102 HOH HOH . 
G 4 HOH A 21 521 71 HOH HOH . 
G 4 HOH A 22 522 45 HOH HOH . 
G 4 HOH A 23 523 43 HOH HOH . 
G 4 HOH A 24 524 90 HOH HOH . 
G 4 HOH A 25 525 64 HOH HOH . 
G 4 HOH A 26 526 13 HOH HOH . 
G 4 HOH A 27 527 44 HOH HOH . 
G 4 HOH A 28 528 2 HOH HOH . 
G 4 HOH A 29 529 30 HOH HOH . 
G 4 HOH A 30 530 100 HOH HOH . 
G 4 HOH A 31 531 84 HOH HOH . 
G 4 HOH A 32 532 68 HOH HOH . 
G 4 HOH A 33 533 61 HOH HOH . 
G 4 HOH A 34 534 29 HOH HOH . 
G 4 HOH A 35 535 15 HOH HOH . 
G 4 HOH A 36 536 22 HOH HOH . 
G 4 HOH A 37 537 60 HOH HOH . 
G 4 HOH A 38 538 87 HOH HOH . 
G 4 HOH A 39 539 34 HOH HOH . 
G 4 HOH A 40 540 56 HOH HOH . 
G 4 HOH A 41 541 41 HOH HOH . 
G 4 HOH A 42 542 81 HOH HOH . 
G 4 HOH A 43 543 12 HOH HOH . 
G 4 HOH A 44 544 16 HOH HOH . 
G 4 HOH A 45 545 52 HOH HOH . 
G 4 HOH A 46 546 18 HOH HOH . 
G 4 HOH A 47 547 92 HOH HOH . 
G 4 HOH A 48 548 59 HOH HOH . 
G 4 HOH A 49 549 77 HOH HOH . 
G 4 HOH A 50 550 65 HOH HOH . 
H 4 HOH B 1 501 101 HOH HOH . 
H 4 HOH B 2 502 98 HOH HOH . 
H 4 HOH B 3 503 25 HOH HOH . 
H 4 HOH B 4 504 72 HOH HOH . 
H 4 HOH B 5 505 20 HOH HOH . 
H 4 HOH B 6 506 99 HOH HOH . 
H 4 HOH B 7 507 103 HOH HOH . 
H 4 HOH B 8 508 4 HOH HOH . 
H 4 HOH B 9 509 36 HOH HOH . 
H 4 HOH B 10 510 21 HOH HOH . 
H 4 HOH B 11 511 7 HOH HOH . 
H 4 HOH B 12 512 58 HOH HOH . 
H 4 HOH B 13 513 19 HOH HOH . 
H 4 HOH B 14 514 88 HOH HOH . 
H 4 HOH B 15 515 70 HOH HOH . 
H 4 HOH B 16 516 26 HOH HOH . 
H 4 HOH B 17 517 23 HOH HOH . 
H 4 HOH B 18 518 96 HOH HOH . 
H 4 HOH B 19 519 9 HOH HOH . 
H 4 HOH B 20 520 46 HOH HOH . 
H 4 HOH B 21 521 40 HOH HOH . 
H 4 HOH B 22 522 5 HOH HOH . 
H 4 HOH B 23 523 76 HOH HOH . 
H 4 HOH B 24 524 78 HOH HOH . 
H 4 HOH B 25 525 95 HOH HOH . 
H 4 HOH B 26 526 66 HOH HOH . 
H 4 HOH B 27 527 53 HOH HOH . 
H 4 HOH B 28 528 42 HOH HOH . 
H 4 HOH B 29 529 31 HOH HOH . 
H 4 HOH B 30 530 48 HOH HOH . 
H 4 HOH B 31 531 86 HOH HOH . 
H 4 HOH B 32 532 17 HOH HOH . 
H 4 HOH B 33 533 49 HOH HOH . 
H 4 HOH B 34 534 24 HOH HOH . 
H 4 HOH B 35 535 8 HOH HOH . 
H 4 HOH B 36 536 1 HOH HOH . 
H 4 HOH B 37 537 97 HOH HOH . 
H 4 HOH B 38 538 39 HOH HOH . 
H 4 HOH B 39 539 83 HOH HOH . 
H 4 HOH B 40 540 28 HOH HOH . 
H 4 HOH B 41 541 11 HOH HOH . 
H 4 HOH B 42 542 75 HOH HOH . 
H 4 HOH B 43 543 74 HOH HOH . 
H 4 HOH B 44 544 80 HOH HOH . 
H 4 HOH B 45 545 67 HOH HOH . 
H 4 HOH B 46 546 33 HOH HOH . 
H 4 HOH B 47 547 105 HOH HOH . 
H 4 HOH B 48 548 37 HOH HOH . 
H 4 HOH B 49 549 10 HOH HOH . 
H 4 HOH B 50 550 63 HOH HOH . 
H 4 HOH B 51 551 69 HOH HOH . 
H 4 HOH B 52 552 82 HOH HOH . 
H 4 HOH B 53 553 14 HOH HOH . 
H 4 HOH B 54 554 85 HOH HOH . 
H 4 HOH B 55 555 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 YLD . B . F 2 -17.075 -5.879 5.019 0.5 46.17 ? C11 YLD 402 B 1 
HETATM 2 C C12 YLD . B . F 2 -16.283 -4.488 4.92 0.5 47.93 ? C12 YLD 402 B 1 
HETATM 3 C C13 YLD . B . F 2 -16.767 -3.5 3.835 0.5 48.1 ? C13 YLD 402 B 1 
HETATM 4 C C14 YLD . B . F 2 -16.1 -2.073 3.729 0.5 41.72 ? C14 YLD 402 B 1 
HETATM 5 C C02 YLD . B . F 2 -20.793 -3.91 1.888 0.5 53.5 ? C02 YLD 402 B 1 
HETATM 6 C C04 YLD . B . F 2 -20.9 -5.805 3.584 0.5 43.76 ? C04 YLD 402 B 1 
HETATM 7 C C05 YLD . B . F 2 -21.6 -7.149 3.933 0.5 43.01 ? C05 YLD 402 B 1 
HETATM 8 C C06 YLD . B . F 2 -23.152 -7.116 4.022 0.5 47.12 ? C06 YLD 402 B 1 
HETATM 9 C C07 YLD . B . F 2 -23.793 -8.451 4.435 0.5 50.21 ? C07 YLD 402 B 1 
HETATM 10 C C08 YLD . B . F 2 -23.615 -5.999 4.962 0.5 51.65 ? C08 YLD 402 B 1 
HETATM 11 C C09 YLD . B . F 2 -19.345 -6.011 3.754 0.5 46.32 ? C09 YLD 402 B 1 
HETATM 12 C C16 YLD . B . F 2 -15.093 -3.389 2.034 0.5 58.72 ? C16 YLD 402 B 1 
HETATM 13 C C17 YLD . B . F 2 -16.424 -4.076 2.451 0.5 53.29 ? C17 YLD 402 B 1 
HETATM 14 C C19 YLD . B . F 2 -16.818 -6.619 6.362 0.5 39.19 ? C19 YLD 402 B 1 
HETATM 15 C C23 YLD . B . F 2 -22.304 -2.777 0.196 0.5 56.37 ? C23 YLD 402 B 1 
HETATM 16 N N03 YLD . B . F 2 -21.176 -5.249 2.23 0.5 42.38 ? N03 YLD 402 B 1 
HETATM 17 N N10 YLD . B . F 2 -18.554 -5.658 4.857 0.5 40.09 ? N10 YLD 402 B 1 
HETATM 18 N N15 YLD . B . F 2 -15.133 -2.066 2.659 0.5 48.54 ? N15 YLD 402 B 1 
HETATM 19 O O01 YLD . B . F 2 -20.271 -3.204 2.681 0.5 47.37 ? O01 YLD 402 B 1 
HETATM 20 O O18 YLD . B . F 2 -16.358 -1.172 4.438 0.5 49.28 ? O18 YLD 402 B 1 
HETATM 21 O O20 YLD . B . F 2 -17.283 -7.947 6.292 0.5 48.51 ? O20 YLD 402 B 1 
HETATM 22 O O21 YLD . B . F 2 -18.801 -6.539 2.776 0.5 39.36 ? O21 YLD 402 B 1 
HETATM 23 O O22 YLD . B . F 2 -21.052 -3.431 0.55 0.5 59.91 ? O22 YLD 402 B 1 
#
_model_server_stats.io_time_ms              88 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#