data_7M06 # _model_server_result.job_id -YHoIyWsrifPoCUI-HSWlA _model_server_result.datetime_utc '2024-10-10 04:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":303}' # _entry.id 7M06 # _exptl.entry_id 7M06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M06 _cell.length_a 72.03 _cell.length_b 84.29 _cell.length_c 200.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 Q N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD2 ASP 239 B ASP 227 1_555 N MG MG . C MG 303 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc2 I MG MG . B MG 302 3_445 C OD2 ASP 239 C ASP 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 I MG MG . B MG 302 1_555 Y O HOH . C HOH 411 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc4 I MG MG . B MG 302 1_555 Y O HOH . C HOH 425 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 X O HOH . B HOH 419 3_445 N MG MG . C MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 P MG MG . C MG 305 1_555 Y O HOH . C HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 313 n n C1 C2 PGE sing 314 n n C1 H1 PGE sing 315 n n C1 H12 PGE sing 316 n n O1 HO1 PGE sing 317 n n C2 O2 PGE sing 318 n n C2 H2 PGE sing 319 n n C2 H22 PGE sing 320 n n O2 C3 PGE sing 321 n n C3 C4 PGE sing 322 n n C3 H3 PGE sing 323 n n C3 H32 PGE sing 324 n n C4 O3 PGE sing 325 n n C4 H4 PGE sing 326 n n C4 H42 PGE sing 327 n n O4 C6 PGE sing 328 n n O4 HO4 PGE sing 329 n n C6 C5 PGE sing 330 n n C6 H6 PGE sing 331 n n C6 H62 PGE sing 332 n n C5 O3 PGE sing 333 n n C5 H5 PGE sing 334 n n C5 H52 PGE sing 335 n n # _atom_sites.entry_id 7M06 _atom_sites.fract_transf_matrix[1][1] 0.013883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 301 6 MG MG . F 2 MG A 1 302 11 MG MG . G 3 PGE A 1 303 1 PGE PGE . H 4 3VN B 1 301 2 3VN 3VN . I 2 MG B 1 302 5 MG MG . J 3 PGE B 1 303 4 PGE PGE . K 5 PEG B 1 304 2 PEG PEG . L 4 3VN C 1 301 1 3VN 3VN . M 2 MG C 1 302 1 MG MG . N 2 MG C 1 303 4 MG MG . O 2 MG C 1 304 7 MG MG . P 2 MG C 1 305 8 MG MG . Q 3 PGE C 1 306 3 PGE PGE . R 2 MG D 1 301 9 MG MG . S 2 MG D 1 302 10 MG MG . T 3 PGE D 1 303 2 PGE PGE . U 5 PEG D 1 304 1 PEG PEG . V 6 EDO D 1 305 1 EDO EDO . W 7 HOH A 1 401 94 HOH HOH . W 7 HOH A 2 402 62 HOH HOH . W 7 HOH A 3 403 44 HOH HOH . W 7 HOH A 4 404 53 HOH HOH . W 7 HOH A 5 405 86 HOH HOH . W 7 HOH A 6 406 3 HOH HOH . W 7 HOH A 7 407 18 HOH HOH . W 7 HOH A 8 408 49 HOH HOH . W 7 HOH A 9 409 42 HOH HOH . W 7 HOH A 10 410 40 HOH HOH . W 7 HOH A 11 411 13 HOH HOH . W 7 HOH A 12 412 67 HOH HOH . W 7 HOH A 13 413 37 HOH HOH . W 7 HOH A 14 414 27 HOH HOH . W 7 HOH A 15 415 85 HOH HOH . W 7 HOH A 16 416 81 HOH HOH . W 7 HOH A 17 417 48 HOH HOH . W 7 HOH A 18 418 33 HOH HOH . W 7 HOH A 19 419 76 HOH HOH . W 7 HOH A 20 420 58 HOH HOH . W 7 HOH A 21 421 78 HOH HOH . X 7 HOH B 1 401 57 HOH HOH . X 7 HOH B 2 402 61 HOH HOH . X 7 HOH B 3 403 52 HOH HOH . X 7 HOH B 4 404 22 HOH HOH . X 7 HOH B 5 405 28 HOH HOH . X 7 HOH B 6 406 72 HOH HOH . X 7 HOH B 7 407 1 HOH HOH . X 7 HOH B 8 408 74 HOH HOH . X 7 HOH B 9 409 5 HOH HOH . X 7 HOH B 10 410 64 HOH HOH . X 7 HOH B 11 411 32 HOH HOH . X 7 HOH B 12 412 82 HOH HOH . X 7 HOH B 13 413 26 HOH HOH . X 7 HOH B 14 414 47 HOH HOH . X 7 HOH B 15 415 19 HOH HOH . X 7 HOH B 16 416 4 HOH HOH . X 7 HOH B 17 417 12 HOH HOH . X 7 HOH B 18 418 97 HOH HOH . X 7 HOH B 19 419 70 HOH HOH . X 7 HOH B 20 420 55 HOH HOH . X 7 HOH B 21 421 46 HOH HOH . Y 7 HOH C 1 401 100 HOH HOH . Y 7 HOH C 2 402 80 HOH HOH . Y 7 HOH C 3 403 89 HOH HOH . Y 7 HOH C 4 404 68 HOH HOH . Y 7 HOH C 5 405 9 HOH HOH . Y 7 HOH C 6 406 90 HOH HOH . Y 7 HOH C 7 407 95 HOH HOH . Y 7 HOH C 8 408 99 HOH HOH . Y 7 HOH C 9 409 69 HOH HOH . Y 7 HOH C 10 410 101 HOH HOH . Y 7 HOH C 11 411 75 HOH HOH . Y 7 HOH C 12 412 56 HOH HOH . Y 7 HOH C 13 413 50 HOH HOH . Y 7 HOH C 14 414 88 HOH HOH . Y 7 HOH C 15 415 23 HOH HOH . Y 7 HOH C 16 416 87 HOH HOH . Y 7 HOH C 17 417 20 HOH HOH . Y 7 HOH C 18 418 59 HOH HOH . Y 7 HOH C 19 419 24 HOH HOH . Y 7 HOH C 20 420 91 HOH HOH . Y 7 HOH C 21 421 92 HOH HOH . Y 7 HOH C 22 422 60 HOH HOH . Y 7 HOH C 23 423 77 HOH HOH . Y 7 HOH C 24 424 79 HOH HOH . Y 7 HOH C 25 425 73 HOH HOH . Y 7 HOH C 26 426 54 HOH HOH . Y 7 HOH C 27 427 63 HOH HOH . Z 7 HOH D 1 401 11 HOH HOH . Z 7 HOH D 2 402 39 HOH HOH . Z 7 HOH D 3 403 93 HOH HOH . Z 7 HOH D 4 404 6 HOH HOH . Z 7 HOH D 5 405 36 HOH HOH . Z 7 HOH D 6 406 2 HOH HOH . Z 7 HOH D 7 407 21 HOH HOH . Z 7 HOH D 8 408 17 HOH HOH . Z 7 HOH D 9 409 71 HOH HOH . Z 7 HOH D 10 410 84 HOH HOH . Z 7 HOH D 11 411 10 HOH HOH . Z 7 HOH D 12 412 14 HOH HOH . Z 7 HOH D 13 413 8 HOH HOH . Z 7 HOH D 14 414 83 HOH HOH . Z 7 HOH D 15 415 15 HOH HOH . Z 7 HOH D 16 416 38 HOH HOH . Z 7 HOH D 17 417 35 HOH HOH . Z 7 HOH D 18 418 66 HOH HOH . Z 7 HOH D 19 419 34 HOH HOH . Z 7 HOH D 20 420 96 HOH HOH . Z 7 HOH D 21 421 41 HOH HOH . Z 7 HOH D 22 422 45 HOH HOH . Z 7 HOH D 23 423 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . J 3 -67.197 16.812 57.591 1 62.91 ? C1 PGE 303 B 1 HETATM 2 O O1 PGE . . . J 3 -66.152 16.012 57.06 1 62.61 ? O1 PGE 303 B 1 HETATM 3 C C2 PGE . . . J 3 -66.604 17.951 58.397 1 63.23 ? C2 PGE 303 B 1 HETATM 4 O O2 PGE . . . J 3 -66.555 19.15 57.644 1 63.43 ? O2 PGE 303 B 1 HETATM 5 C C3 PGE . . . J 3 -67.769 19.513 57.022 1 63.56 ? C3 PGE 303 B 1 HETATM 6 C C4 PGE . . . J 3 -67.567 20.752 56.168 1 63.54 ? C4 PGE 303 B 1 HETATM 7 O O4 PGE . . . J 3 -68.753 19.011 52.255 1 64.29 ? O4 PGE 303 B 1 HETATM 8 C C6 PGE . . . J 3 -68.369 20.354 52.548 1 64.19 ? C6 PGE 303 B 1 HETATM 9 C C5 PGE . . . J 3 -68.604 20.684 54.015 1 63.86 ? C5 PGE 303 B 1 HETATM 10 O O3 PGE . . . J 3 -67.472 20.369 54.805 1 63.75 ? O3 PGE 303 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #