data_7M0T # _model_server_result.job_id VKg1lQeGYT0dfGW66jULTA _model_server_result.datetime_utc '2024-11-25 13:27:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7M0T # _exptl.entry_id 7M0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7M0T _cell.length_a 116.964 _cell.length_b 116.964 _cell.length_c 129.733 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 199 B ASN 195 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 A OD2 ASP 212 B ASP 208 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc3 D O1B ANP . B ANP 402 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 D O2A ANP . B ANP 402 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc5 B OD1 ASN 141 A ASN 581 1_555 G MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B OD2 ASP 154 A ASP 594 1_555 G MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc7 F O1B ANP . A ANP 801 1_555 G MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc8 F O1A ANP . A ANP 801 1_555 G MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 57 n n PG O2G ANP sing 58 n n PG O3G ANP sing 59 n n PG N3B ANP sing 60 n n O2G HOG2 ANP sing 61 n n O3G HOG3 ANP sing 62 n n PB O1B ANP doub 63 n n PB O2B ANP sing 64 n n PB N3B ANP sing 65 n n PB O3A ANP sing 66 n n O2B HOB2 ANP sing 67 n n N3B HNB1 ANP sing 68 n n PA O1A ANP doub 69 n n PA O2A ANP sing 70 n n PA O3A ANP sing 71 n n PA O5' ANP sing 72 n n O2A HOA2 ANP sing 73 n n O5' C5' ANP sing 74 n n C5' C4' ANP sing 75 n n C5' "H5'1" ANP sing 76 n n C5' "H5'2" ANP sing 77 n n C4' O4' ANP sing 78 n n C4' C3' ANP sing 79 n n C4' H4' ANP sing 80 n n O4' C1' ANP sing 81 n n C3' O3' ANP sing 82 n n C3' C2' ANP sing 83 n n C3' H3' ANP sing 84 n n O3' HO3' ANP sing 85 n n C2' O2' ANP sing 86 n n C2' C1' ANP sing 87 n n C2' H2' ANP sing 88 n n O2' HO2' ANP sing 89 n n C1' N9 ANP sing 90 n n C1' H1' ANP sing 91 n n N9 C8 ANP sing 92 n y N9 C4 ANP sing 93 n y C8 N7 ANP doub 94 n y C8 H8 ANP sing 95 n n N7 C5 ANP sing 96 n y C5 C6 ANP sing 97 n y C5 C4 ANP doub 98 n y C6 N6 ANP sing 99 n n C6 N1 ANP doub 100 n y N6 HN61 ANP sing 101 n n N6 HN62 ANP sing 102 n n N1 C2 ANP sing 103 n y C2 N3 ANP doub 104 n y C2 H2 ANP sing 105 n n N3 C4 ANP sing 106 n y # _atom_sites.entry_id 7M0T _atom_sites.fract_transf_matrix[1][1] 0.00855 _atom_sites.fract_transf_matrix[1][2] 0.004936 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3EW B 1 401 502 3EW 3EW . D 4 ANP B 1 402 801 ANP ANP . E 5 MG B 1 403 802 MG MG . F 4 ANP A 1 801 801 ANP ANP . G 5 MG A 1 802 802 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 55.798 -24.063 9.667 0.86 127.44 ? PG ANP 402 B 1 HETATM 2 O O1G ANP . . . D 4 56.998 -23.222 9.305 0.86 120.38 ? O1G ANP 402 B 1 HETATM 3 O O2G ANP . . . D 4 54.477 -23.228 9.422 0.86 131.96 ? O2G ANP 402 B 1 HETATM 4 O O3G ANP . . . D 4 55.798 -25.382 8.778 0.86 130.18 ? O3G ANP 402 B 1 HETATM 5 P PB ANP . . . D 4 56.924 -25.523 11.851 0.86 117.69 ? PB ANP 402 B 1 HETATM 6 O O1B ANP . . . D 4 58.249 -24.83 11.775 0.86 113.12 ? O1B ANP 402 B 1 HETATM 7 O O2B ANP . . . D 4 56.515 -25.829 13.333 0.86 106.51 ? O2B ANP 402 B 1 HETATM 8 N N3B ANP . . . D 4 55.733 -24.475 11.308 0.86 115.93 ? N3B ANP 402 B 1 HETATM 9 P PA ANP . . . D 4 58.358 -27.569 10.516 0.86 111.3 ? PA ANP 402 B 1 HETATM 10 O O1A ANP . . . D 4 58.182 -28.077 9.125 0.86 113.49 -1 O1A ANP 402 B 1 HETATM 11 O O2A ANP . . . D 4 59.527 -26.594 10.713 0.86 107.21 ? O2A ANP 402 B 1 HETATM 12 O O3A ANP . . . D 4 57.006 -26.841 10.993 0.86 115.31 ? O3A ANP 402 B 1 HETATM 13 O O5' ANP . . . D 4 58.481 -28.82 11.521 0.86 107.56 ? O5' ANP 402 B 1 HETATM 14 C C5' ANP . . . D 4 57.526 -28.964 12.639 0.86 107.45 ? C5' ANP 402 B 1 HETATM 15 C C4' ANP . . . D 4 58.137 -29.378 13.969 0.86 103.14 ? C4' ANP 402 B 1 HETATM 16 O O4' ANP . . . D 4 59.266 -30.246 13.748 0.86 95.59 ? O4' ANP 402 B 1 HETATM 17 C C3' ANP . . . D 4 58.673 -28.251 14.854 0.86 100.13 ? C3' ANP 402 B 1 HETATM 18 O O3' ANP . . . D 4 57.688 -27.598 15.659 0.86 88 ? O3' ANP 402 B 1 HETATM 19 C C2' ANP . . . D 4 59.726 -28.965 15.714 0.86 95.12 ? C2' ANP 402 B 1 HETATM 20 O O2' ANP . . . D 4 59.167 -29.458 16.921 0.86 94.36 ? O2' ANP 402 B 1 HETATM 21 C C1' ANP . . . D 4 60.128 -30.183 14.871 0.86 94.29 ? C1' ANP 402 B 1 HETATM 22 N N9 ANP . . . D 4 61.529 -30.198 14.434 0.86 95.69 ? N9 ANP 402 B 1 HETATM 23 C C8 ANP . . . D 4 62.079 -29.71 13.271 0.86 100.92 ? C8 ANP 402 B 1 HETATM 24 N N7 ANP . . . D 4 63.377 -29.895 13.173 0.86 94.98 ? N7 ANP 402 B 1 HETATM 25 C C5 ANP . . . D 4 63.702 -30.555 14.352 0.86 92.94 ? C5 ANP 402 B 1 HETATM 26 C C6 ANP . . . D 4 64.927 -31.045 14.867 0.86 90.26 ? C6 ANP 402 B 1 HETATM 27 N N6 ANP . . . D 4 66.102 -30.939 14.234 0.86 80.85 ? N6 ANP 402 B 1 HETATM 28 N N1 ANP . . . D 4 64.895 -31.659 16.079 0.86 88.17 ? N1 ANP 402 B 1 HETATM 29 C C2 ANP . . . D 4 63.726 -31.763 16.721 0.86 86.04 ? C2 ANP 402 B 1 HETATM 30 N N3 ANP . . . D 4 62.517 -31.343 16.337 0.86 85.66 ? N3 ANP 402 B 1 HETATM 31 C C4 ANP . . . D 4 62.573 -30.746 15.141 0.86 90.06 ? C4 ANP 402 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #